position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title oxLDL_CD4+_T_cell_chromatin_accessibility -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 21201 Sum of sequence lengths 11161562 Min sequence length 0 Max sequence length 1000 Average sequence length 526 Possible positions 11161562 Oligonucleotide statistics: Total occurrences 10795619 Position interval parameters: Position interval 20 Number of windows 50 Total positions 11161562 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 1864 34216 2 -24 [-479,-460] -469.5 2259 41191 3 -23 [-459,-440] -449.5 2733 50306 4 -22 [-439,-420] -429.5 3356 61402 5 -21 [-419,-400] -409.5 3931 73143 6 -20 [-399,-380] -389.5 4593 85463 7 -19 [-379,-360] -369.5 5387 100444 8 -18 [-359,-340] -349.5 6257 117173 9 -17 [-339,-320] -329.5 7236 135532 10 -16 [-319,-300] -309.5 8206 155323 11 -15 [-299,-280] -289.5 9315 176350 12 -14 [-279,-260] -269.5 10340 197243 13 -13 [-259,-240] -249.5 11355 217780 14 -12 [-239,-220] -229.5 12266 237051 15 -11 [-219,-200] -209.5 13135 254542 16 -10 [-199,-180] -189.5 13990 271816 17 -9 [-179,-160] -169.5 15006 290408 18 -8 [-159,-140] -149.5 16584 316006 19 -7 [-139,-120] -129.5 17719 344169 20 -6 [-119,-100] -109.5 18695 364813 21 -5 [-99,-80] -89.5 19758 384968 22 -4 [-79,-60] -69.5 21154 409075 23 -3 [-59,-40] -49.5 21201 424020 24 -2 [-39,-20] -29.5 21201 424020 25 -1 [-19,0] -9.5 21201 424020 26 0 [1,20] 10.5 21201 424020 27 1 [21,40] 30.5 21201 424020 28 2 [41,60] 50.5 21201 424020 29 3 [61,80] 70.5 21065 407692 30 4 [81,100] 90.5 19701 383885 31 5 [101,120] 110.5 18645 363831 32 6 [121,140] 130.5 17657 343010 33 7 [141,160] 150.5 16515 314548 34 8 [161,180] 170.5 14950 289452 35 9 [181,200] 190.5 13939 270965 36 10 [201,220] 210.5 13087 253646 37 11 [221,240] 230.5 12226 236181 38 12 [241,260] 250.5 11316 216776 39 13 [261,280] 270.5 10286 196193 40 14 [281,300] 290.5 9265 175244 41 15 [301,320] 310.5 8153 154394 42 16 [321,340] 330.5 7183 134566 43 17 [341,360] 350.5 6208 116307 44 18 [361,380] 370.5 5352 99649 45 19 [381,400] 390.5 4546 84791 46 20 [401,420] 410.5 3904 72547 47 21 [421,440] 430.5 3320 60798 48 22 [441,460] 450.5 2707 49819 49 23 [461,480] 470.5 2237 40812 50 24 [481,500] 490.5 1847 33922 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 3288604 | 4326.4 | 49 | 0.0e+00 | 0 | 300 | 1 | 10062 | 11953 | 14417 | 17941 | 21356 | 24961 | 28943 | 33968 | 39450 | 44783 | 51035 | 56792 | 62220 | 67292 | 71590 | 76909 | 83089 | 89593 | 97658 | 103864 | 109837 | 117022 | 121375 | 122342 | 122473 | 122900 | 123415 | 123597 | 120808 | 114003 | 108923 | 103328 | 95477 | 88490 | 82658 | 78393 | 73254 | 67769 | 61451 | 55310 | 48686 | 42492 | 36647 | 31549 | 26596 | 22834 | 19449 | 15774 | 12956 | 10920 |
| a | a | 2118820 | 3541.8 | 49 | 0.0e+00 | 0 | 300 | 2 | 6857 | 8149 | 10027 | 12153 | 14434 | 16793 | 19858 | 22914 | 26505 | 29831 | 34245 | 38068 | 42127 | 45761 | 49620 | 52892 | 56501 | 61760 | 66935 | 70789 | 75288 | 79817 | 83304 | 82823 | 82765 | 82577 | 82292 | 82744 | 78185 | 72934 | 68436 | 63859 | 58155 | 52660 | 49258 | 45915 | 42451 | 38525 | 34259 | 30405 | 26644 | 22947 | 20195 | 17179 | 14653 | 12443 | 10508 | 8560 | 6980 | 5840 |
| c | c | 3279738 | 3251.2 | 49 | 0.0e+00 | 0 | 300 | 3 | 10821 | 13051 | 15858 | 19131 | 22911 | 26806 | 31539 | 36690 | 42065 | 48434 | 54444 | 60869 | 66818 | 72402 | 77847 | 82564 | 87794 | 95715 | 103693 | 109306 | 113911 | 120224 | 123854 | 123343 | 122840 | 122425 | 121778 | 121460 | 115909 | 109646 | 103408 | 97932 | 89489 | 82242 | 77282 | 72002 | 66944 | 61592 | 56560 | 50614 | 45095 | 39417 | 34250 | 29254 | 24706 | 21119 | 17484 | 14452 | 11818 | 9930 |
| t | t | 2108457 | 2612.4 | 49 | 0.0e+00 | 0 | 300 | 4 | 6018 | 7170 | 8794 | 10738 | 12763 | 14774 | 17506 | 20406 | 23510 | 27386 | 30513 | 34296 | 38486 | 42749 | 46172 | 49931 | 53194 | 58360 | 64695 | 68952 | 73133 | 78742 | 81816 | 81516 | 82063 | 82416 | 82711 | 82349 | 79512 | 74414 | 70529 | 65960 | 60275 | 55610 | 52199 | 48440 | 45144 | 41249 | 37011 | 33131 | 29363 | 25978 | 22126 | 19055 | 16639 | 14256 | 11828 | 9789 | 8129 | 6661 |
Host name rsat Job started 2026-01-05.150520 Job done 2026-01-05.150613 Seconds 53.02 user 53.02 system 0.02 cuser 0 ; csystem 0