/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title oxLDL_CD4+_T_cell_chromatin_accessibility -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	21201
	Sum of sequence lengths      	11161562
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	526
	Possible positions           	11140361
 Oligonucleotide statistics:
	Total occurrences    	10771218
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	11140361
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	1864	34216
	2	-24	[-479,-460]	-469.5	2259	41191
	3	-23	[-459,-440]	-449.5	2733	50306
	4	-22	[-439,-420]	-429.5	3356	61402
	5	-21	[-419,-400]	-409.5	3931	73143
	6	-20	[-399,-380]	-389.5	4593	85463
	7	-19	[-379,-360]	-369.5	5387	100444
	8	-18	[-359,-340]	-349.5	6257	117173
	9	-17	[-339,-320]	-329.5	7236	135532
	10	-16	[-319,-300]	-309.5	8206	155323
	11	-15	[-299,-280]	-289.5	9315	176350
	12	-14	[-279,-260]	-269.5	10340	197243
	13	-13	[-259,-240]	-249.5	11355	217780
	14	-12	[-239,-220]	-229.5	12266	237051
	15	-11	[-219,-200]	-209.5	13135	254542
	16	-10	[-199,-180]	-189.5	13990	271816
	17	-9	[-179,-160]	-169.5	15006	290408
	18	-8	[-159,-140]	-149.5	16584	316006
	19	-7	[-139,-120]	-129.5	17719	344169
	20	-6	[-119,-100]	-109.5	18695	364813
	21	-5	[-99,-80]	-89.5	19758	384968
	22	-4	[-79,-60]	-69.5	21154	409075
	23	-3	[-59,-40]	-49.5	21201	424020
	24	-2	[-39,-20]	-29.5	21201	424020
	25	-1	[-19,0]	-9.5	21201	424020
	26	0	[1,20]	10.5	21201	424020
	27	1	[21,40]	30.5	21201	424020
	28	2	[41,60]	50.5	21201	423884
	29	3	[61,80]	70.5	21027	406328
	30	4	[81,100]	90.5	19673	382829
	31	5	[101,120]	110.5	18632	362843
	32	6	[121,140]	130.5	17631	341868
	33	7	[141,160]	150.5	16482	312983
	34	8	[161,180]	170.5	14926	288441
	35	9	[181,200]	190.5	13922	270113
	36	10	[201,220]	210.5	13067	252785
	37	11	[221,240]	230.5	12207	235271
	38	12	[241,260]	250.5	11292	215746
	39	13	[261,280]	270.5	10253	195172
	40	14	[281,300]	290.5	9236	174132
	41	15	[301,320]	310.5	8136	153424
	42	16	[321,340]	330.5	7148	133591
	43	17	[341,360]	350.5	6187	115451
	44	18	[361,380]	370.5	5334	98843
	45	19	[381,400]	390.5	4534	84149
	46	20	[401,420]	410.5	3881	71963
	47	21	[421,440]	430.5	3305	60185
	48	22	[441,460]	450.5	2698	49349
	49	23	[461,480]	470.5	2222	40422
	50	24	[481,500]	490.5	1836	32075

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gg gg 1117056 5523.6 49 0.0e+00 0 300 1 3487 4092 4869 6174 7235 8616 9800 11762 13468 15339 17452 19404 21014 22798 23765 25461 27805 29684 32064 33753 36065 38599 40014 40566 40452 40193 40890 41044 40602 38571 36910 35392 33004 30891 29101 27920 26184 24498 22214 20149 17682 15194 12968 11315 9530 8054 7006 5612 4668 3726
cc cc 1112981 4395.6 49 0.0e+00 0 300 2 3893 4653 5691 6796 8279 9709 11420 13233 15064 17353 19489 22005 23971 25834 27608 28948 30738 33323 35905 37207 38399 40482 41288 40977 40478 40113 40158 39641 37585 35942 33811 32330 29483 27492 25798 24164 22526 20551 19149 17273 15343 13401 11664 10068 8421 7212 5927 4961 3975 3250
ca ca 651422 4109.1 49 0.0e+00 0 300 3 2133 2651 3233 3919 4600 5337 6358 7313 8315 9579 10999 12295 13368 14411 15790 16657 17901 19520 21548 22826 24186 25224 26342 26068 25902 25689 25466 25774 23797 22349 20453 18984 17119 15253 14162 13096 11982 11052 9914 8562 7707 6583 5776 4962 4120 3467 2911 2297 1941 1531
tg tg 651440 3620.8 49 0.0e+00 0 300 4 1715 2014 2470 3033 3640 4330 4939 5713 6717 7906 8915 9915 11153 12208 13304 14607 15745 17187 19389 20789 22260 24111 24922 25593 25590 26073 26102 26167 25429 23757 22494 21133 19281 17690 16432 15473 14501 13374 11847 10670 9481 8422 7148 6169 5344 4637 3878 3139 2539 2095
aa aa 536668 2498.9 49 0.0e+00 0 300 5 1834 2103 2707 3118 3790 4435 5161 6067 7013 7675 8869 9741 10902 11875 12915 13929 14673 16028 17086 18060 19108 20367 21359 21541 21488 21171 21286 21080 19904 18274 17195 15886 14314 12930 12240 11249 10444 9322 8078 7310 6233 5322 4769 3922 3600 2944 2447 2055 1618 1231
ac ac 488026 2192.0 49 0.0e+00 0 300 6 1714 2036 2480 2984 3537 4155 4915 5474 6439 7296 8248 9277 10074 10917 11872 12434 13295 14662 15941 16553 17769 18655 19380 19103 18999 19023 18615 18868 17472 16610 15132 14160 12756 11523 10791 9914 9223 8479 7811 6695 6164 5070 4642 3888 3206 2775 2290 1890 1545 1275
gt gt 488282 1911.1 49 0.0e+00 0 300 7 1328 1627 1965 2452 3032 3393 3895 4584 5315 6108 6936 7836 8660 9375 10046 11031 11825 12929 14405 15360 16597 17740 18417 18521 18656 19215 19279 19039 18814 17531 16807 15621 14309 13431 12234 11640 10899 10009 9087 8016 7191 6362 5457 4775 3980 3635 2953 2361 2032 1572
tt tt 530597 1877.0 49 0.0e+00 0 300 8 1431 1655 2121 2587 2985 3443 4190 4871 5683 6550 7133 8226 9205 10528 11323 12329 13171 14271 16256 17313 18428 20117 21015 20700 21128 20816 21377 21008 20227 19007 18016 16702 15356 14320 13420 12518 11520 10496 9379 8382 7343 6510 5482 4840 4330 3569 2987 2564 2155 1614
at at 333644 1363.1 49 0.0e+00 0 300 9 934 1137 1395 1713 1936 2296 2747 3248 3608 4351 4920 5469 6281 6968 7618 8127 8744 9606 10487 11394 12032 12889 13708 13604 13560 13699 13589 13755 12721 11817 11061 10326 9272 8495 7924 7427 6645 6112 5151 4645 4011 3542 3081 2511 2285 1926 1600 1303 1114 860
cg cg 757416 1174.8 49 0.0e+00 0 300 10 2484 2978 3642 4395 5253 6097 7132 8365 9833 11096 12483 13780 15153 16317 17220 18542 19701 21265 22734 24352 25152 26543 27531 27660 27691 27914 27663 27549 26586 25315 24369 23212 21398 19979 18795 17729 16405 15120 14072 12560 11138 9776 8595 7193 6078 5249 4330 3598 3037 2357
ta ta 290771 618.2 49 0.0e+00 0 300 11 878 1035 1203 1534 1794 2094 2568 2937 3382 3744 4295 4844 5544 6187 6740 7129 7610 8458 9373 9780 10432 11123 11625 11352 11506 11668 11439 11593 10941 10209 9792 9017 8038 7357 7078 6505 5909 5268 4676 4085 3594 3129 2805 2305 1963 1709 1511 1188 1029 796
tc tc 630190 282.9 49 1.2e-34 1.9e-33 32.71 12 1992 2464 2994 3577 4343 4898 5801 6877 7724 9175 10149 11294 12569 13802 14789 15848 16647 18419 19647 21035 21985 23346 24212 23843 23805 23823 23757 23522 22553 21147 19974 18823 17245 15991 15036 13737 12989 11882 10871 9748 8729 7722 6496 5572 4869 4217 3331 2794 2324 1803
ga ga 634513 243.1 49 1.5e-27 2.5e-26 25.61 13 1991 2361 2872 3572 4260 4890 5778 6578 7781 8760 10024 11132 12248 13297 14158 15076 16348 17613 18820 20294 21419 23009 23999 23827 23790 23963 24101 24186 23177 21872 20811 19630 18337 16846 15742 14798 13888 12620 11371 10260 8886 7757 6757 5792 4854 4229 3530 2931 2317 1961
ct ct 750940 162.0 49 5.3e-14 8.4e-13 12.07 14 2304 2769 3291 4019 4774 5656 6624 7772 8840 10387 11453 12773 14307 15822 17209 18391 19428 21590 23476 24891 26139 27948 28645 28603 28728 28675 28452 28406 27536 25714 24466 23056 20969 19217 18280 16765 15753 14558 13139 11881 10621 9340 7960 6787 5898 5013 4144 3466 2754 2251
ag ag 755417 135.5 49 4.8e-10 7.6e-09 8.12 15 2372 2873 3440 4336 5168 5904 7031 8111 9436 10493 12189 13564 14847 15983 17196 18379 19770 21435 23393 24761 26352 27873 28811 28541 28695 28650 28774 28979 27739 25971 24799 23219 21485 19477 18089 17103 15939 14402 13016 11512 10057 8825 7544 6689 5446 4684 4066 3223 2639 2137
gc gc 1041855 126.1 49 1.0e-08 1.6e-07 6.78 16 3251 3867 4705 5739 6823 8056 9466 11034 12872 14565 16608 18400 20270 21801 23598 25321 27081 29337 32335 34419 35722 37639 38907 39384 39542 39474 39106 39261 37850 35716 34115 32350 29388 27026 25348 23798 22023 20325 18457 16605 14612 12901 11203 9436 8028 6746 5742 4720 3814 3069 
 Host name	rsat
 Job started	2026-01-05.150614
 Job done	2026-01-05.150713
 Seconds	60.01
	user	60.01
	system	0.02
	cuser	0.01
;	csystem	0