/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title oxLDL_CD4+_T_cell_chromatin_accessibility -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	15572
	Sum of sequence lengths      	4867484
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	312
	Possible positions           	4851912
 Oligonucleotide statistics:
	Total occurrences    	4641711
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	4851912
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	40	671
	2	-24	[-479,-460]	-469.5	59	999
	3	-23	[-459,-440]	-449.5	85	1400
	4	-22	[-439,-420]	-429.5	108	1930
	5	-21	[-419,-400]	-409.5	148	2556
	6	-20	[-399,-380]	-389.5	203	3528
	7	-19	[-379,-360]	-369.5	269	4798
	8	-18	[-359,-340]	-349.5	403	6819
	9	-17	[-339,-320]	-329.5	568	9660
	10	-16	[-319,-300]	-309.5	827	13868
	11	-15	[-299,-280]	-289.5	1255	21124
	12	-14	[-279,-260]	-269.5	1748	30312
	13	-13	[-259,-240]	-249.5	2376	41425
	14	-12	[-239,-220]	-229.5	3008	54169
	15	-11	[-219,-200]	-209.5	3819	68648
	16	-10	[-199,-180]	-189.5	4664	85243
	17	-9	[-179,-160]	-169.5	5762	104550
	18	-8	[-159,-140]	-149.5	7867	134901
	19	-7	[-139,-120]	-129.5	9653	177318
	20	-6	[-119,-100]	-109.5	11303	210948
	21	-5	[-99,-80]	-89.5	13144	244986
	22	-4	[-79,-60]	-69.5	15511	287219
	23	-3	[-59,-40]	-49.5	15572	311440
	24	-2	[-39,-20]	-29.5	15572	311440
	25	-1	[-19,0]	-9.5	15572	311440
	26	0	[1,20]	10.5	15572	311440
	27	1	[21,40]	30.5	15572	311440
	28	2	[41,60]	50.5	15572	311249
	29	3	[61,80]	70.5	15314	282590
	30	4	[81,100]	90.5	12977	241312
	31	5	[101,120]	110.5	11181	207623
	32	6	[121,140]	130.5	9524	173743
	33	7	[141,160]	150.5	7707	130825
	34	8	[161,180]	170.5	5670	102339
	35	9	[181,200]	190.5	4575	83584
	36	10	[201,220]	210.5	3755	67025
	37	11	[221,240]	230.5	2959	52930
	38	12	[241,260]	250.5	2321	40187
	39	13	[261,280]	270.5	1705	29341
	40	14	[281,300]	290.5	1227	20276
	41	15	[301,320]	310.5	801	13340
	42	16	[321,340]	330.5	550	9335
	43	17	[341,360]	350.5	396	6554
	44	18	[361,380]	370.5	265	4668
	45	19	[381,400]	390.5	197	3422
	46	20	[401,420]	410.5	144	2476
	47	21	[421,440]	430.5	105	1886
	48	22	[441,460]	450.5	84	1350
	49	23	[461,480]	470.5	57	966
	50	24	[481,500]	490.5	39	619

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
cg cg 59999 758.8 49 0.0e+00 0 300 1 5 11 11 10 25 33 48 81 93 140 208 262 356 497 660 848 1072 1553 2041 2640 3009 3776 4187 4148 4150 4254 4145 4323 3793 3034 2620 2038 1453 1115 801 677 559 384 305 191 137 97 68 45 38 26 13 8 3 8
ta ta 264867 541.7 49 0.0e+00 0 300 2 49 52 93 112 157 209 264 408 556 786 1247 1810 2495 3150 4012 5029 6123 7793 9785 11716 13211 15290 16462 16484 16498 16279 16363 16575 14728 12987 11219 9549 7319 5924 4920 4049 3241 2315 1742 1256 810 522 365 274 194 152 109 94 54 36
tt tt 407806 538.2 49 0.0e+00 0 300 3 55 77 92 150 206 268 402 566 948 1250 1849 2645 3615 4926 6223 7473 9011 11360 14830 17167 19910 23515 25395 25701 25829 25723 26089 25952 23316 19936 17335 14796 11182 9238 7674 6155 4926 3688 2523 1812 1130 824 601 399 334 224 178 131 110 67
aa aa 406999 446.1 49 0.0e+00 0 300 4 63 74 123 204 192 319 406 583 826 1231 1919 2731 3723 4825 6095 7646 9456 11801 15207 17921 20460 23552 25844 25922 25926 25578 25629 25487 22777 19669 17025 14251 10953 8828 7356 5796 4597 3659 2625 1783 1197 772 590 385 283 252 167 137 97 57
at at 308370 368.5 49 1.5e-50 2.4e-49 48.62 5 49 71 90 144 182 221 305 481 634 954 1447 2058 2882 3638 4708 5781 6936 8901 11399 13319 15454 18014 19367 19401 19413 19387 19312 19243 17392 15011 13000 11044 8434 6806 5610 4565 3626 2673 1930 1474 906 622 440 317 212 182 125 107 60 43
gc gc 217091 302.3 49 3.5e-38 5.5e-37 36.26 6 27 37 54 68 108 149 185 280 425 565 868 1224 1697 2297 2759 3611 4497 5856 7873 9566 11149 13202 14182 14274 14186 14226 14227 14303 13090 10853 9434 7762 5738 4347 3418 2740 2264 1625 1219 867 518 429 277 200 141 94 73 47 41 19
gg gg 248900 204.2 49 7.7e-21 1.2e-19 18.91 7 28 36 54 94 120 207 244 313 393 636 1029 1456 2078 2485 3310 4217 5117 6812 9061 10968 12545 15112 16141 16120 16097 16226 16345 16296 14840 12472 10535 8946 6475 5088 4157 3383 2536 2086 1483 1032 707 513 323 232 172 131 91 76 57 25
cc cc 248662 182.3 49 3.1e-17 5e-16 15.30 8 27 59 57 78 135 180 232 343 474 651 1069 1598 2105 2781 3502 4219 5239 6778 9158 10751 12687 15262 16707 15918 15914 16062 15935 15979 14867 12389 10632 8687 6569 5046 4001 3321 2660 1953 1463 927 693 411 316 253 172 139 123 57 41 42
tg tg 353303 157.9 49 2.2e-13 3.6e-12 11.45 9 38 62 79 123 169 241 337 458 649 999 1469 2192 2896 3769 4855 6067 7299 9584 12782 15232 17731 21015 22644 22840 23021 23067 23006 22817 21151 17853 15356 12767 9605 7343 5835 4755 3634 2784 2082 1498 925 698 453 344 270 157 146 97 67 42
gt gt 253589 143.2 49 3.7e-11 5.9e-10 9.23 10 27 42 74 83 116 188 248 345 452 712 1053 1567 2064 2645 3455 4267 5243 6886 9054 11029 12618 15020 16329 16434 16520 16670 16437 16442 15178 12916 11155 9150 6777 5213 4249 3447 2651 1985 1530 992 689 475 346 237 202 123 99 76 52 27
ca ca 353978 120.7 49 5.6e-08 9e-07 6.05 11 45 73 93 135 189 255 339 504 678 1023 1526 2167 2947 3879 4792 5942 7487 9643 12874 15242 18075 21144 23016 22928 22972 22977 22880 22935 20924 17765 15406 12801 9397 7148 5845 4691 3728 2805 2097 1430 922 675 488 329 235 192 133 91 68 48
ac ac 253614 117.7 49 1.4e-07 2.2e-06 5.65 12 29 49 59 87 139 181 265 350 470 691 1121 1553 2075 2722 3399 4217 5365 7018 9257 10830 12904 15047 16445 16326 16402 16364 16398 16559 15033 12981 11031 9125 6900 5172 4200 3302 2683 2019 1525 1039 703 458 339 216 180 139 96 61 48 42
tc tc 287787 98.6 49 3.5e-05 0.00055 3.26 13 42 57 80 100 149 213 293 417 590 847 1245 1821 2381 3158 4012 4895 6025 7750 10295 12177 14476 17124 18703 18815 18598 18745 18773 18529 16990 14445 12427 10325 7822 5983 4902 3875 3086 2264 1604 1135 786 538 366 279 199 151 115 83 53 49
ag ag 344736 87.7 49 5.7e-04 0.0091 2.04 14 52 59 120 136 180 267 318 430 658 957 1487 2069 2871 3758 4684 5898 7339 9567 12522 15090 17511 20548 22324 22399 22223 22302 22124 22447 20174 17236 14729 12426 9217 7026 5877 4553 3687 2887 2094 1355 918 688 469 339 222 170 130 96 72 31
ga ga 287783 83.5 49 1.6e-03 0.025 1.61 15 40 56 78 126 152 197 287 345 530 821 1238 1728 2377 3138 4006 4995 6025 8002 10533 12450 14531 17184 18769 18584 18701 18710 18544 18827 16824 14430 12167 10211 7723 5897 4862 3780 2988 2407 1734 1170 798 573 382 267 184 136 113 75 59 29
ct ct 344227 82.2 49 2.1e-03 0.033 1.48 16 51 57 91 113 177 255 347 460 735 955 1475 2165 2915 3762 4752 5901 7332 9462 12470 14787 17346 20484 22246 22306 22091 22071 22318 22263 20273 17358 14834 12416 9451 7288 5758 4602 3673 2678 2001 1415 947 643 414 325 247 160 148 94 64 51 
 Host name	rsat
 Job started	2026-01-05.150006
 Job done	2026-01-05.150033
 Seconds	26.62
	user	26.62
	system	0.03
	cuser	0.01
;	csystem	0