/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5.tf
		file1	1	11	9163
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_test_vs_ctrl_m5 MA0786.2 oligos_6nt_test_vs_ctrl_m5 POU3F1 0.748 0.680 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 MA0787.1 oligos_6nt_test_vs_ctrl_m5 POU3F2 0.735 0.674 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_6nt_test_vs_ctrl_m5 MA0788.1 oligos_6nt_test_vs_ctrl_m5 POU3F3 0.735 0.622 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_6nt_test_vs_ctrl_m5 MA0792.1 oligos_6nt_test_vs_ctrl_m5 POU5F1B 0.722 0.591 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_6nt_test_vs_ctrl_m5 MA0785.2 oligos_6nt_test_vs_ctrl_m5 POU2F1 0.716 0.586 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_6nt_test_vs_ctrl_m5 MA1525.3 oligos_6nt_test_vs_ctrl_m5 NFATC4 0.715 0.585 11 9 9 11 0.8182 0.8182 1.0000 D 2
oligos_6nt_test_vs_ctrl_m5 MA0789.1 oligos_6nt_test_vs_ctrl_m5 POU3F4 0.713 0.584 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_6nt_test_vs_ctrl_m5 MA0152.3 oligos_6nt_test_vs_ctrl_m5 Nfatc2 0.771 0.561 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_test_vs_ctrl_m5 MA0606.3 oligos_6nt_test_vs_ctrl_m5 Nfat5 0.752 0.547 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_6nt_test_vs_ctrl_m5 MA0461.3 oligos_6nt_test_vs_ctrl_m5 Atoh1 0.725 0.423 11 8 7 12 0.5833 0.6364 0.8750 R -1
oligos_6nt_test_vs_ctrl_m5 MA1116.2 oligos_6nt_test_vs_ctrl_m5 RBPJ 0.771 0.420 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_6nt_test_vs_ctrl_m5 MA1524.3 oligos_6nt_test_vs_ctrl_m5 Msgn1 0.838 0.419 11 10 7 14 0.5000 0.6364 0.7000 D -3
oligos_6nt_test_vs_ctrl_m5 MA0047.4 oligos_6nt_test_vs_ctrl_m5 FOXA2 0.717 0.419 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_6nt_test_vs_ctrl_m5 MA0624.3 oligos_6nt_test_vs_ctrl_m5 Nfatc1 0.767 0.418 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_6nt_test_vs_ctrl_m5 MA1568.2 oligos_6nt_test_vs_ctrl_m5 TCF21 0.832 0.416 11 10 7 14 0.5000 0.6364 0.7000 R -3
oligos_6nt_test_vs_ctrl_m5 MA0678.1 oligos_6nt_test_vs_ctrl_m5 OLIG2 0.826 0.413 11 10 7 14 0.5000 0.6364 0.7000 R -3
oligos_6nt_test_vs_ctrl_m5 MA0031.2 oligos_6nt_test_vs_ctrl_m5 FOXD1 0.824 0.412 11 7 6 12 0.5000 0.5455 0.8571 D 5
oligos_6nt_test_vs_ctrl_m5 MA0095.4 oligos_6nt_test_vs_ctrl_m5 Yy1 0.891 0.411 11 8 6 13 0.4615 0.5455 0.7500 D -2
oligos_6nt_test_vs_ctrl_m5 MA0042.2 oligos_6nt_test_vs_ctrl_m5 FOXI1 0.821 0.410 11 7 6 12 0.5000 0.5455 0.8571 D 5
oligos_6nt_test_vs_ctrl_m5 MA1608.2 oligos_6nt_test_vs_ctrl_m5 Isl1 0.820 0.410 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_test_vs_ctrl_m5 MA1683.2 oligos_6nt_test_vs_ctrl_m5 FOXA3 0.820 0.410 11 7 6 12 0.5000 0.5455 0.8571 D 5
oligos_6nt_test_vs_ctrl_m5 MA0607.2 oligos_6nt_test_vs_ctrl_m5 BHLHA15 0.819 0.410 11 10 7 14 0.5000 0.6364 0.7000 R -3
oligos_6nt_test_vs_ctrl_m5 MA0827.1 oligos_6nt_test_vs_ctrl_m5 OLIG3 0.819 0.410 11 10 7 14 0.5000 0.6364 0.7000 R -3
oligos_6nt_test_vs_ctrl_m5 MA0481.4 oligos_6nt_test_vs_ctrl_m5 FOXP1 0.817 0.409 11 7 6 12 0.5000 0.5455 0.8571 D 5
oligos_6nt_test_vs_ctrl_m5 MA0818.2 oligos_6nt_test_vs_ctrl_m5 BHLHE22 0.816 0.408 11 10 7 14 0.5000 0.6364 0.7000 R -3
oligos_6nt_test_vs_ctrl_m5 MA1467.3 oligos_6nt_test_vs_ctrl_m5 Atoh1 0.804 0.402 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_6nt_test_vs_ctrl_m5 MA1103.3 oligos_6nt_test_vs_ctrl_m5 FOXK2 0.803 0.402 11 7 6 12 0.5000 0.5455 0.8571 D 5
oligos_6nt_test_vs_ctrl_m5 MA2117.1 oligos_6nt_test_vs_ctrl_m5 FOXP4 0.802 0.401 11 7 6 12 0.5000 0.5455 0.8571 D 5 
 Host name	rsat
 Job started	2026-01-05.150906
 Job done	2026-01-05.150925
 Seconds	3.7
	user	3.71
	system	1.23
	cuser	12.56
;	csystem	1.5