/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf
		file1	1	15	4894
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_test_vs_ctrl_m3 MA1101.3 oligos_7nt_test_vs_ctrl_m3 BACH2 0.850 0.623 15 11 11 15 0.7333 0.7333 1.0000 R 2
oligos_7nt_test_vs_ctrl_m3 MA0841.2 oligos_7nt_test_vs_ctrl_m3 NFE2 0.931 0.620 15 10 10 15 0.6667 0.6667 1.0000 R 2
oligos_7nt_test_vs_ctrl_m3 MA0490.3 oligos_7nt_test_vs_ctrl_m3 JUNB 0.999 0.599 15 9 9 15 0.6000 0.6000 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA0491.3 oligos_7nt_test_vs_ctrl_m3 JUND 0.995 0.597 15 9 9 15 0.6000 0.6000 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA0477.3 oligos_7nt_test_vs_ctrl_m3 FOSL1 0.994 0.596 15 9 9 15 0.6000 0.6000 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA1633.2 oligos_7nt_test_vs_ctrl_m3 BACH1 0.992 0.595 15 9 9 15 0.6000 0.6000 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA0655.1 oligos_7nt_test_vs_ctrl_m3 JDP2 0.991 0.595 15 9 9 15 0.6000 0.6000 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA0478.2 oligos_7nt_test_vs_ctrl_m3 FOSL2 0.891 0.594 15 10 10 15 0.6667 0.6667 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA1141.2 oligos_7nt_test_vs_ctrl_m3 FOS::JUND 0.984 0.591 15 9 9 15 0.6000 0.6000 1.0000 D 3
oligos_7nt_test_vs_ctrl_m3 MA1128.2 oligos_7nt_test_vs_ctrl_m3 FOSL1::JUN 0.982 0.589 15 9 9 15 0.6000 0.6000 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA1134.2 oligos_7nt_test_vs_ctrl_m3 FOS::JUNB 0.979 0.588 15 9 9 15 0.6000 0.6000 1.0000 D 3
oligos_7nt_test_vs_ctrl_m3 MA0099.4 oligos_7nt_test_vs_ctrl_m3 FOS::JUN 0.978 0.587 15 9 9 15 0.6000 0.6000 1.0000 D 3
oligos_7nt_test_vs_ctrl_m3 MA1130.2 oligos_7nt_test_vs_ctrl_m3 FOSL2::JUN 0.978 0.587 15 9 9 15 0.6000 0.6000 1.0000 D 3
oligos_7nt_test_vs_ctrl_m3 MA1144.2 oligos_7nt_test_vs_ctrl_m3 FOSL2::JUND 0.978 0.587 15 9 9 15 0.6000 0.6000 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA1137.2 oligos_7nt_test_vs_ctrl_m3 FOSL1::JUNB 0.975 0.585 15 9 9 15 0.6000 0.6000 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA1138.2 oligos_7nt_test_vs_ctrl_m3 FOSL2::JUNB 0.975 0.585 15 9 9 15 0.6000 0.6000 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA1135.2 oligos_7nt_test_vs_ctrl_m3 FOSB::JUNB 0.973 0.584 15 9 9 15 0.6000 0.6000 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA0089.3 oligos_7nt_test_vs_ctrl_m3 MAFG::NFE2L1 0.767 0.562 15 11 11 15 0.7333 0.7333 1.0000 R 1
oligos_7nt_test_vs_ctrl_m3 MA0501.2 oligos_7nt_test_vs_ctrl_m3 MAF::NFE2 0.741 0.543 15 11 11 15 0.7333 0.7333 1.0000 R 1
oligos_7nt_test_vs_ctrl_m3 MA0489.3 oligos_7nt_test_vs_ctrl_m3 Jun 0.998 0.532 15 8 8 15 0.5333 0.5333 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA0150.3 oligos_7nt_test_vs_ctrl_m3 Nfe2l2 0.718 0.527 15 11 11 15 0.7333 0.7333 1.0000 R 1
oligos_7nt_test_vs_ctrl_m3 MA0476.2 oligos_7nt_test_vs_ctrl_m3 FOS 0.977 0.521 15 8 8 15 0.5333 0.5333 1.0000 R 3
oligos_7nt_test_vs_ctrl_m3 MA1142.2 oligos_7nt_test_vs_ctrl_m3 FOSL1::JUND 0.968 0.516 15 8 8 15 0.5333 0.5333 1.0000 R 4
oligos_7nt_test_vs_ctrl_m3 MA1132.2 oligos_7nt_test_vs_ctrl_m3 JUN::JUNB 0.961 0.512 15 8 8 15 0.5333 0.5333 1.0000 R 4
oligos_7nt_test_vs_ctrl_m3 MA0496.4 oligos_7nt_test_vs_ctrl_m3 MAFK 0.764 0.509 15 10 10 15 0.6667 0.6667 1.0000 R 2
oligos_7nt_test_vs_ctrl_m3 MA1928.2 oligos_7nt_test_vs_ctrl_m3 BNC2 0.999 0.466 15 7 7 15 0.4667 0.4667 1.0000 D 4
oligos_7nt_test_vs_ctrl_m3 MA1634.2 oligos_7nt_test_vs_ctrl_m3 BATF 0.999 0.466 15 7 7 15 0.4667 0.4667 1.0000 R 4
oligos_7nt_test_vs_ctrl_m3 MA1988.2 oligos_7nt_test_vs_ctrl_m3 Atf3 0.999 0.466 15 7 7 15 0.4667 0.4667 1.0000 R 4
oligos_7nt_test_vs_ctrl_m3 MA0462.3 oligos_7nt_test_vs_ctrl_m3 BATF::JUN 0.999 0.466 15 7 7 15 0.4667 0.4667 1.0000 R 4
oligos_7nt_test_vs_ctrl_m3 MA0835.3 oligos_7nt_test_vs_ctrl_m3 BATF3 0.998 0.466 15 7 7 15 0.4667 0.4667 1.0000 R 4 
 Host name	rsat
 Job started	2026-01-05.150930
 Job done	2026-01-05.150952
 Seconds	3.75
	user	3.75
	system	1.15
	cuser	16.31
;	csystem	1.31