One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift4 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4) |
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; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=4; ncol=15; ----wtAGTCATAww
; Alignment reference
a 0 0 0 0 3555 3085 11561 987 696 896 12358 295 10949 3696 3956
c 0 0 0 0 1710 2379 127 828 340 11108 231 358 594 2487 2859
g 0 0 0 0 2296 3185 385 10135 355 456 75 245 393 2321 2134
t 0 0 0 0 5480 4392 968 1091 11650 581 377 12143 1105 4537 4092
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| oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4) |
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; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=4; score= 1; ----wtAGTCATAww
; cor=; Ncor=
a 0 0 0 0 3555 3085 11561 987 696 896 12358 295 10949 3696 3956
c 0 0 0 0 1710 2379 127 828 340 11108 231 358 594 2487 2859
g 0 0 0 0 2296 3185 385 10135 355 456 75 245 393 2321 2134
t 0 0 0 0 5480 4392 968 1091 11650 581 377 12143 1105 4537 4092
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| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
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; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=2/2; ncol2=15; w=-4; offset=-4; strand=D; shift=0; score=0.646633; wwTATGAGTCATAww
; cor=; Ncor=
a 1467 1461 665 3476 158 133 4534 306 158 332 4647 330 3385 1457 1433
c 904 1061 410 539 63 150 36 500 81 4306 63 472 416 970 1005
g 1121 988 475 483 98 4331 72 3782 84 123 41 509 390 1023 1000
t 1402 1384 3344 396 4575 280 252 306 4571 133 143 3583 703 1444 1456
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |
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; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=20; shift=0; ncol=20; wwAAAAAgAAAtGAAATgww
; Alignment reference
a 580 560 1051 1053 1120 1101 1083 245 1136 1134 1142 297 251 1135 1110 1139 251 241 573 524
c 165 173 57 74 48 55 32 73 37 60 62 42 48 44 66 46 62 90 208 221
g 240 216 91 94 52 70 69 848 69 50 58 124 907 43 62 66 82 823 189 229
t 337 373 123 101 102 96 138 156 80 78 60 859 116 100 84 71 927 168 352 348
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| oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |
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; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/2; ncol2=20; w=0; offset=0; strand=D; shift=0; score= 1; wwAAAAAgAAAtGAAATgww
; cor=; Ncor=
a 580 560 1051 1053 1120 1101 1083 245 1136 1134 1142 297 251 1135 1110 1139 251 241 573 524
c 165 173 57 74 48 55 32 73 37 60 62 42 48 44 66 46 62 90 208 221
g 240 216 91 94 52 70 69 848 69 50 58 124 907 43 62 66 82 823 189 229
t 337 373 123 101 102 96 138 156 80 78 60 859 116 100 84 71 927 168 352 348
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| oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |
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; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=2/2; ncol2=15; w=0; offset=0; strand=D; shift=0; score=0.581255; aaAAAAAmAAAAAaa-----
; cor=; Ncor=
a 8028 8188 13312 13832 14137 13872 14043 6486 14133 13586 14092 13827 13220 8209 8190 0 0 0 0 0
c 1918 2290 713 580 506 432 476 6797 474 624 475 609 856 2147 2174 0 0 0 0 0
g 1989 1821 475 568 347 420 366 857 195 708 388 401 497 2110 2070 0 0 0 0 0
t 3422 3058 857 377 367 633 472 1217 555 439 402 520 784 2891 2923 0 0 0 0 0
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
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; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=22; shift=0; ncol=22; wwTATATTTTAAAAAATTATww
; Alignment reference
a 207 254 62 505 72 509 54 73 86 100 518 525 586 532 521 504 111 108 506 87 245 208
c 100 95 46 31 55 34 35 27 26 29 25 45 24 38 43 36 36 52 43 54 95 121
g 86 96 31 48 23 40 21 36 27 26 33 30 25 19 30 37 47 52 45 34 117 100
t 294 242 548 103 537 104 577 551 548 532 111 87 52 98 93 110 493 475 93 512 230 258
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| oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
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; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/2; ncol2=22; w=0; offset=0; strand=D; shift=0; score= 1; wwTATATTTTAAAAAATTATww
; cor=; Ncor=
a 207 254 62 505 72 509 54 73 86 100 518 525 586 532 521 504 111 108 506 87 245 208
c 100 95 46 31 55 34 35 27 26 29 25 45 24 38 43 36 36 52 43 54 95 121
g 86 96 31 48 23 40 21 36 27 26 33 30 25 19 30 37 47 52 45 34 117 100
t 294 242 548 103 537 104 577 551 548 532 111 87 52 98 93 110 493 475 93 512 230 258
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| oligos_7nt_test_vs_ctrl_m1_rc_shift0 (oligos_7nt_test_vs_ctrl_m1_rc) |
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; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1_rc; m=2/2; ncol2=21; w=0; offset=0; strand=R; shift=0; score=0.787125; wwTATATTTTAAAAATgTTww-
; cor=; Ncor=
a 281 308 103 688 105 673 49 80 67 101 715 743 804 722 745 100 147 113 124 262 323 0
c 156 160 78 62 85 60 57 35 48 57 45 37 36 60 51 32 56 68 43 146 181 0
g 155 147 60 68 41 64 35 39 31 44 59 49 40 45 55 66 571 53 79 149 138 0
t 350 327 701 124 711 145 801 788 796 740 123 113 62 115 91 744 168 708 696 385 300 0
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift1 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1) |
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; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=21; shift=1; ncol=22; -wwAAcATTTTTAAAATATAww
; Alignment reference
a 0 300 385 696 708 168 744 91 115 62 113 123 740 796 788 801 145 711 124 701 327 350
c 0 138 149 79 53 571 66 55 45 40 49 59 44 31 39 35 64 41 68 60 147 155
g 0 181 146 43 68 56 32 51 60 36 37 45 57 48 35 57 60 85 62 78 160 156
t 0 323 262 124 113 147 100 745 722 804 743 715 101 67 80 49 673 105 688 103 308 281
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| oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1) |
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; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/2; ncol2=21; w=0; offset=0; strand=D; shift=1; score= 1; -wwAAcATTTTTAAAATATAww
; cor=; Ncor=
a 0 300 385 696 708 168 744 91 115 62 113 123 740 796 788 801 145 711 124 701 327 350
c 0 138 149 79 53 571 66 55 45 40 49 59 44 31 39 35 64 41 68 60 147 155
g 0 181 146 43 68 56 32 51 60 36 37 45 57 48 35 57 60 85 62 78 160 156
t 0 323 262 124 113 147 100 745 722 804 743 715 101 67 80 49 673 105 688 103 308 281
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| oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc) |
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; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4_rc; m=2/2; ncol2=22; w=-1; offset=-1; strand=R; shift=0; score=0.787125; wwATAATTTTTTAAAATATAww
; cor=; Ncor=
a 258 230 512 93 475 493 110 93 98 52 87 111 532 548 551 577 104 537 103 548 242 294
c 100 117 34 45 52 47 37 30 19 25 30 33 26 27 36 21 40 23 48 31 96 86
g 121 95 54 43 52 36 36 43 38 24 45 25 29 26 27 35 34 55 31 46 95 100
t 208 245 87 506 108 111 504 521 532 586 525 518 100 86 73 54 509 72 505 62 254 207
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |
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; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; wwATGGTAAww
; Alignment reference
a 3198 2713 7883 437 718 735 514 8171 7702 2874 2826
c 1346 1764 315 94 82 295 181 141 376 1820 1672
g 1798 1491 497 295 7861 7544 177 265 442 1540 1530
t 2821 3195 468 8337 502 589 8291 586 643 2929 3135
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| oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |
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; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwATGGTAAww
; cor=; Ncor=
a 3198 2713 7883 437 718 735 514 8171 7702 2874 2826
c 1346 1764 315 94 82 295 181 141 376 1820 1672
g 1798 1491 497 295 7861 7544 177 265 442 1540 1530
t 2821 3195 468 8337 502 589 8291 586 643 2929 3135
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |
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; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; aaAAAAAmAAAAAaa
; Alignment reference
a 8028 8188 13312 13832 14137 13872 14043 6486 14133 13586 14092 13827 13220 8209 8190
c 1918 2290 713 580 506 432 476 6797 474 624 475 609 856 2147 2174
g 1989 1821 475 568 347 420 366 857 195 708 388 401 497 2110 2070
t 3422 3058 857 377 367 633 472 1217 555 439 402 520 784 2891 2923
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| oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |
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; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/2; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; aaAAAAAmAAAAAaa
; cor=; Ncor=
a 8028 8188 13312 13832 14137 13872 14043 6486 14133 13586 14092 13827 13220 8209 8190
c 1918 2290 713 580 506 432 476 6797 474 624 475 609 856 2147 2174
g 1989 1821 475 568 347 420 366 857 195 708 388 401 497 2110 2070
t 3422 3058 857 377 367 633 472 1217 555 439 402 520 784 2891 2923
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| oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |
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; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=2/2; ncol2=20; w=0; offset=0; strand=D; shift=0; score=0.581255; wwAAAAAgAAAtGAA
; cor=; Ncor=
a 580 560 1051 1053 1120 1101 1083 245 1136 1134 1142 297 251 1135 1110
c 165 173 57 74 48 55 32 73 37 60 62 42 48 44 66
g 240 216 91 94 52 70 69 848 69 50 58 124 907 43 62
t 337 373 123 101 102 96 138 156 80 78 60 859 116 100 84
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2) |
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; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=13; shift=0; ncol=13; wwATAAATGTGww
; Alignment reference
a 1289 1007 3008 196 3096 2600 3104 126 363 205 349 986 1126
c 501 644 88 130 63 177 91 196 87 103 105 514 639
g 670 588 167 233 152 90 105 90 2819 82 2747 585 764
t 949 1170 146 2850 98 542 109 2997 140 3019 208 1324 880
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| oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2) |
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; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/1; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; wwATAAATGTGww
; cor=; Ncor=
a 1289 1007 3008 196 3096 2600 3104 126 363 205 349 986 1126
c 501 644 88 130 63 177 91 196 87 103 105 514 639
g 670 588 167 233 152 90 105 90 2819 82 2747 585 764
t 949 1170 146 2850 98 542 109 2997 140 3019 208 1324 880
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |
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; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; wwTATTCAAww
; Alignment reference
a 3011 3222 156 8486 325 665 859 7531 6655 3080 2708
c 1346 1211 62 36 294 201 6497 329 495 1408 1628
g 1526 1427 76 57 224 322 197 60 385 1305 1259
t 2774 2797 8363 78 7814 7469 1104 737 1122 2864 3062
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| oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |
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; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwTATTCAAww
; cor=; Ncor=
a 3011 3222 156 8486 325 665 859 7531 6655 3080 2708
c 1346 1211 62 36 294 201 6497 329 495 1408 1628
g 1526 1427 76 57 224 322 197 60 385 1305 1259
t 2774 2797 8363 78 7814 7469 1104 737 1122 2864 3062
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3) |
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; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=10; shift=0; ncol=10; wtACTTATww
; Alignment reference
a 1261 827 3641 86 313 69 3791 37 1190 959
c 707 928 27 3590 36 21 8 134 674 756
g 639 754 89 20 487 9 5 11 822 653
t 1202 1300 52 113 2973 3710 5 3627 1123 1441
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| oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3) |
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; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; wtACTTATww
; cor=; Ncor=
a 1261 827 3641 86 313 69 3791 37 1190 959
c 707 928 27 3590 36 21 8 134 674 756
g 639 754 89 20 487 9 5 11 822 653
t 1202 1300 52 113 2973 3710 5 3627 1123 1441
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
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; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=0; ncol=15; wwTATGAGTCATAww
; Alignment reference
a 1467 1461 665 3476 158 133 4534 306 158 332 4647 330 3385 1457 1433
c 904 1061 410 539 63 150 36 500 81 4306 63 472 416 970 1005
g 1121 988 475 483 98 4331 72 3782 84 123 41 509 390 1023 1000
t 1402 1384 3344 396 4575 280 252 306 4571 133 143 3583 703 1444 1456
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| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
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; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/2; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; wwTATGAGTCATAww
; cor=; Ncor=
a 1467 1461 665 3476 158 133 4534 306 158 332 4647 330 3385 1457 1433
c 904 1061 410 539 63 150 36 500 81 4306 63 472 416 970 1005
g 1121 988 475 483 98 4331 72 3782 84 123 41 509 390 1023 1000
t 1402 1384 3344 396 4575 280 252 306 4571 133 143 3583 703 1444 1456
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| oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4) |
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; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=2/2; ncol2=11; w=0; offset=4; strand=D; shift=4; score=0.646633; ----wtAGTCATAww
; cor=; Ncor=
a 0 0 0 0 3555 3085 11561 987 696 896 12358 295 10949 3696 3956
c 0 0 0 0 1710 2379 127 828 340 11108 231 358 594 2487 2859
g 0 0 0 0 2296 3185 385 10135 355 456 75 245 393 2321 2134
t 0 0 0 0 5480 4392 968 1091 11650 581 377 12143 1105 4537 4092
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