One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.145905_2026-01-05.145905_RyN7XF/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift3 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift3 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=11; shift=3; ncol=14; ---wwATGGTAAww ; Alignment reference a 0 0 0 3198 2713 7883 437 718 735 514 8171 7702 2874 2826 c 0 0 0 1346 1764 315 94 82 295 181 141 376 1820 1672 g 0 0 0 1798 1491 497 295 7861 7544 177 265 442 1540 1530 t 0 0 0 2821 3195 468 8337 502 589 8291 586 643 2929 3135

MA0786.2_shift3 (POU3F1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0786.2 (POU3F1); m=1/28; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.679943; ---wTATGywAAT- ; cor=; Ncor= a 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 0 c 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 0 g 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 0 t 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 0

MA0787.1_shift3 (POU3F2)
; oligos_6nt_test_vs_ctrl_m5 versus MA0787.1 (POU3F2); m=2/28; ncol2=12; w=0; offset=0; strand=D; shift=3; score=0.674102; ---wTATGCwAATk ; cor=; Ncor= a 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 c 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 g 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 t 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0

MA0788.1_shift2 (POU3F3)
; oligos_6nt_test_vs_ctrl_m5 versus MA0788.1 (POU3F3); m=3/28; ncol2=13; w=-1; offset=-1; strand=D; shift=2; score=0.621615; --wwTATGCwAATt ; cor=; Ncor= a 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 c 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 g 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 t 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0

MA0792.1_shift4 (POU5F1B)
; oligos_6nt_test_vs_ctrl_m5 versus MA0792.1 (POU5F1B); m=4/28; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.591051; ----TATGywAAT- ; cor=; Ncor= a 0 0 0 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 0 c 0 0 0 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 0 g 0 0 0 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 0 t 0 0 0 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0 0

MA0785.2_shift4 (POU2F1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0785.2 (POU2F1); m=5/28; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.585891; ----TATGcwAAT- ; cor=; Ncor= a 0 0 0 0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 0 c 0 0 0 0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 0 g 0 0 0 0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 0 t 0 0 0 0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 0

MA1525.3_shift5 (NFATC4)
; oligos_6nt_test_vs_ctrl_m5 versus MA1525.3 (NFATC4); m=6/28; ncol2=9; w=0; offset=2; strand=D; shift=5; score=0.584887; -----ayGGAAAmw ; cor=; Ncor= a 0 0 0 0 0 7139.0 16.0 0.0 0.0 7139.0 7139.0 7139.0 7139.0 2709.0 c 0 0 0 0 0 715.0 2586.0 0.0 0.0 0.0 0.0 460.0 6522.0 1280.0 g 0 0 0 0 0 2590.0 43.0 7139.0 7139.0 0.0 0.0 42.0 1149.0 138.0 t 0 0 0 0 0 1505.0 4553.0 0.0 0.0 0.0 0.0 107.0 1164.0 3012.0

MA0789.1_shift4 (POU3F4)
; oligos_6nt_test_vs_ctrl_m5 versus MA0789.1 (POU3F4); m=7/28; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.583534; ----TATGCwAAT- ; cor=; Ncor= a 0 0 0 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 c 0 0 0 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 g 0 0 0 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 t 0 0 0 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0

MA0152.3_shift4 (Nfatc2)
; oligos_6nt_test_vs_ctrl_m5 versus MA0152.3 (Nfatc2); m=8/28; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.560801; ----aATGGAAA-- ; cor=; Ncor= a 0 0 0 0 2166.0 2583.0 170.0 78.0 33.0 3095.0 3140.0 2944.0 0 0 c 0 0 0 0 460.0 206.0 124.0 17.0 27.0 38.0 19.0 104.0 0 0 g 0 0 0 0 292.0 329.0 101.0 3118.0 3133.0 65.0 45.0 79.0 0 0 t 0 0 0 0 321.0 121.0 2844.0 26.0 46.0 41.0 35.0 112.0 0 0

MA0606.3_shift5 (Nfat5)
; oligos_6nt_test_vs_ctrl_m5 versus MA0606.3 (Nfat5); m=9/28; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.54675; -----ATGGAAAA- ; cor=; Ncor= a 0 0 0 0 0 279.0 35.0 13.0 16.0 328.0 336.0 334.0 315.0 0 c 0 0 0 0 0 17.0 10.0 0.0 8.0 8.0 1.0 4.0 8.0 0 g 0 0 0 0 0 47.0 9.0 332.0 325.0 15.0 10.0 8.0 19.0 0 t 0 0 0 0 0 13.0 302.0 11.0 7.0 5.0 9.0 10.0 14.0 0

MA0461.3_rc_shift2 (Atoh1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0461.3_rc (Atoh1_rc); m=10/28; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.422637; --CATATGky---- ; cor=; Ncor= a 0 0 31.0 1027.0 0.0 1027.0 0.0 0.0 21.0 59.0 0 0 0 0 c 0 0 1027.0 5.0 0.0 136.0 34.0 8.0 149.0 372.0 0 0 0 0 g 0 0 1.0 4.0 74.0 10.0 20.0 1027.0 334.0 108.0 0 0 0 0 t 0 0 2.0 22.0 1027.0 17.0 1027.0 42.0 523.0 655.0 0 0 0 0

MA1116.2_shift6 (RBPJ)
; oligos_6nt_test_vs_ctrl_m5 versus MA1116.2 (RBPJ); m=11/28; ncol2=6; w=0; offset=3; strand=D; shift=6; score=0.420455; ------TGGGAA-- ; cor=; Ncor= a 0 0 0 0 0 0 2.0 35.0 9.0 7.0 2369.0 2382.0 0 0 c 0 0 0 0 0 0 12.0 25.0 20.0 8.0 0.0 15.0 0 0 g 0 0 0 0 0 0 2.0 2341.0 2313.0 2309.0 4.0 1.0 0 0 t 0 0 0 0 0 0 2386.0 1.0 60.0 78.0 29.0 4.0 0 0

MA1524.3_shift0 (Msgn1)
; oligos_6nt_test_vs_ctrl_m5 versus MA1524.3 (Msgn1); m=12/28; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score= 0.4188; raCAAATGGy---- ; cor=; Ncor= a 193.0 363.0 0.0 537.0 460.0 537.0 18.0 1.0 5.0 37.0 0 0 0 0 c 21.0 128.0 539.0 3.0 8.0 4.0 6.0 2.0 8.0 140.0 0 0 0 0 g 324.0 46.0 2.0 0.0 52.0 0.0 3.0 531.0 512.0 50.0 0 0 0 0 t 4.0 5.0 1.0 2.0 22.0 1.0 515.0 8.0 17.0 315.0 0 0 0 0

MA0047.4_shift7 (FOXA2)
; oligos_6nt_test_vs_ctrl_m5 versus MA0047.4 (FOXA2); m=13/28; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.418516; -------wGTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 c 0 0 0 0 0 0 0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 g 0 0 0 0 0 0 0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 t 0 0 0 0 0 0 0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0

MA0624.3_shift6 (Nfatc1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0624.3 (Nfatc1); m=14/28; ncol2=6; w=0; offset=3; strand=D; shift=6; score=0.418344; ------TGGAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 128.0 55.0 62.0 6080.0 6107.0 5947.0 0 0 c 0 0 0 0 0 0 227.0 13.0 16.0 30.0 13.0 77.0 0 0 g 0 0 0 0 0 0 65.0 6106.0 6058.0 27.0 32.0 43.0 0 0 t 0 0 0 0 0 0 5771.0 17.0 55.0 54.0 39.0 124.0 0 0

MA1568.2_rc_shift0 (TCF21_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1568.2_rc (TCF21_rc); m=15/28; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.415987; rmCATATGGt---- ; cor=; Ncor= a 431.0 339.0 18.0 872.0 0.0 872.0 14.0 2.0 28.0 194.0 0 0 0 0 c 6.0 533.0 872.0 0.0 71.0 67.0 164.0 12.0 205.0 352.0 0 0 0 0 g 441.0 86.0 0.0 107.0 43.0 54.0 0.0 872.0 872.0 20.0 0 0 0 0 t 87.0 19.0 4.0 21.0 872.0 0.0 872.0 4.0 89.0 872.0 0 0 0 0

MA0678.1_rc_shift0 (OLIG2_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0678.1_rc (OLIG2_rc); m=16/28; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.413127; rmCATATGkT---- ; cor=; Ncor= a 1609.0 744.0 117.0 1609.0 4.0 1609.0 22.0 0.0 16.0 108.0 0 0 0 0 c 57.0 866.0 1609.0 0.0 18.0 0.0 53.0 4.0 142.0 283.0 0 0 0 0 g 689.0 396.0 3.0 159.0 22.0 0.0 2.0 1609.0 929.0 90.0 0 0 0 0 t 146.0 4.0 10.0 21.0 1609.0 0.0 1609.0 74.0 680.0 1609.0 0 0 0 0

MA0031.2_shift8 (FOXD1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0031.2 (FOXD1); m=17/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.411865; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 c 0 0 0 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 g 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 t 0 0 0 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0

MA0095.4_shift1 (Yy1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0095.4 (Yy1); m=18/28; ncol2=8; w=-2; offset=-2; strand=D; shift=1; score=0.411112; -CAAAATGG----- ; cor=; Ncor= a 0 3123.0 41529.0 39666.0 30769.0 41506.0 689.0 561.0 1597.0 0 0 0 0 0 c 0 33122.0 926.0 1447.0 2536.0 746.0 241.0 165.0 971.0 0 0 0 0 0 g 0 3684.0 287.0 1320.0 8658.0 712.0 708.0 42263.0 39612.0 0 0 0 0 0 t 0 3419.0 606.0 915.0 1385.0 384.0 41710.0 359.0 1168.0 0 0 0 0 0

MA0042.2_shift8 (FOXI1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0042.2 (FOXI1); m=19/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.410268; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 c 0 0 0 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 g 0 0 0 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 t 0 0 0 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0

MA1608.2_rc_shift2 (Isl1_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA1608.2_rc (Isl1_rc); m=20/28; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score=0.410076; --cTAATGG----- ; cor=; Ncor= a 0 0 436.0 110.0 5430.0 5482.0 32.0 266.0 379.0 0 0 0 0 0 c 0 0 3702.0 20.0 39.0 34.0 99.0 54.0 192.0 0 0 0 0 0 g 0 0 410.0 45.0 104.0 54.0 30.0 4885.0 4710.0 0 0 0 0 0 t 0 0 1089.0 5462.0 64.0 67.0 5476.0 432.0 356.0 0 0 0 0 0

MA1683.2_shift8 (FOXA3)
; oligos_6nt_test_vs_ctrl_m5 versus MA1683.2 (FOXA3); m=21/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.410028; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 c 0 0 0 0 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 g 0 0 0 0 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 t 0 0 0 0 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0

MA0607.2_rc_shift0 (BHLHA15_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0607.2_rc (BHLHA15_rc); m=22/28; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.409526; aCCATATGGt---- ; cor=; Ncor= a 8119.0 2784.0 38.0 11369.0 0.0 11369.0 44.0 0.0 33.0 1748.0 0 0 0 0 c 772.0 8585.0 11369.0 6.0 56.0 392.0 215.0 0.0 774.0 3272.0 0 0 0 0 g 3251.0 778.0 0.0 223.0 373.0 59.0 14.0 11369.0 8626.0 757.0 0 0 0 0 t 1749.0 37.0 0.0 50.0 11369.0 0.0 11369.0 41.0 2744.0 8097.0 0 0 0 0

MA0827.1_rc_shift0 (OLIG3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0827.1_rc (OLIG3_rc); m=23/28; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.409512; rvCATATGkT---- ; cor=; Ncor= a 1915.0 1010.0 275.0 1915.0 0.0 1915.0 22.0 3.0 6.0 132.0 0 0 0 0 c 176.0 904.0 1915.0 2.0 11.0 72.0 99.0 0.0 208.0 427.0 0 0 0 0 g 964.0 662.0 4.0 224.0 103.0 26.0 10.0 1915.0 1115.0 204.0 0 0 0 0 t 265.0 28.0 4.0 56.0 1915.0 0.0 1915.0 222.0 800.0 1915.0 0 0 0 0

MA0481.4_shift8 (FOXP1)
; oligos_6nt_test_vs_ctrl_m5 versus MA0481.4 (FOXP1); m=24/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.408629; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 c 0 0 0 0 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 g 0 0 0 0 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 t 0 0 0 0 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0

MA0818.2_rc_shift0 (BHLHE22_rc)
; oligos_6nt_test_vs_ctrl_m5 versus MA0818.2_rc (BHLHE22_rc); m=25/28; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.408003; rmCATATGkT---- ; cor=; Ncor= a 5142.0 3086.0 0.0 8662.0 0.0 8662.0 80.0 0.0 56.0 765.0 0 0 0 0 c 280.0 4007.0 8662.0 0.0 44.0 75.0 850.0 0.0 1530.0 557.0 0 0 0 0 g 3520.0 1481.0 0.0 808.0 44.0 59.0 0.0 8662.0 3954.0 491.0 0 0 0 0 t 448.0 89.0 0.0 90.0 8662.0 0.0 8662.0 0.0 3121.0 8662.0 0 0 0 0

MA1467.3_shift2 (Atoh1)
; oligos_6nt_test_vs_ctrl_m5 versus MA1467.3 (Atoh1); m=26/28; ncol2=7; w=-1; offset=-1; strand=D; shift=2; score=0.40209; --CAGATGG----- ; cor=; Ncor= a 0 0 273.0 20977.0 165.0 21079.0 117.0 280.0 1158.0 0 0 0 0 0 c 0 0 20657.0 170.0 425.0 115.0 552.0 159.0 2163.0 0 0 0 0 0 g 0 0 208.0 257.0 18911.0 189.0 99.0 20837.0 15743.0 0 0 0 0 0 t 0 0 339.0 73.0 1976.0 94.0 20709.0 201.0 2413.0 0 0 0 0 0

MA1103.3_shift8 (FOXK2)
; oligos_6nt_test_vs_ctrl_m5 versus MA1103.3 (FOXK2); m=27/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.401659; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 c 0 0 0 0 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 g 0 0 0 0 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 t 0 0 0 0 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0

MA2117.1_shift8 (FOXP4)
; oligos_6nt_test_vs_ctrl_m5 versus MA2117.1 (FOXP4); m=28/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.400927; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 c 0 0 0 0 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 g 0 0 0 0 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 t 0 0 0 0 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 31 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=0; ncol=15; wwTATGAGTCATAww ; Alignment reference a 1467 1461 665 3476 158 133 4534 306 158 332 4647 330 3385 1457 1433 c 904 1061 410 539 63 150 36 500 81 4306 63 472 416 970 1005 g 1121 988 475 483 98 4331 72 3782 84 123 41 509 390 1023 1000 t 1402 1384 3344 396 4575 280 252 306 4571 133 143 3583 703 1444 1456

MA1101.3_rc_shift2 (BACH2_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1101.3_rc (BACH2_rc); m=1/30; ncol2=11; w=0; offset=2; strand=R; shift=2; score=0.623434; --sATGAsTCATG-- ; cor=; Ncor= a 0 0 5274.0 63746.0 0.0 3.0 67975.0 18.0 6.0 54.0 68266.0 0.0 8116.0 0 0 c 0 0 30498.0 2028.0 11.0 0.0 856.0 30785.0 13.0 68240.0 1.0 15304.0 6727.0 0 0 g 0 0 35220.0 11634.0 2.0 68215.0 20.0 37438.0 1088.0 0.0 7.0 260.0 61580.0 0 0 t 0 0 4522.0 47.0 68264.0 115.0 3.0 50.0 67846.0 6.0 1.0 62993.0 9369.0 0 0

MA0841.2_rc_shift2 (NFE2_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0841.2_rc (NFE2_rc); m=2/30; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.620348; --sATGAGTCAT--- ; cor=; Ncor= a 0 0 3417.0 18831.0 5.0 3.0 18831.0 17.0 4.0 2.0 18831.0 5.0 0 0 0 c 0 0 5067.0 10.0 8.0 0.0 3.0 4472.0 0.0 18831.0 0.0 1306.0 0 0 0 g 0 0 9860.0 2689.0 13.0 18831.0 20.0 14360.0 11.0 0.0 8.0 9.0 0 0 0 t 0 0 487.0 0.0 18831.0 1.0 0.0 37.0 18831.0 0.0 2.0 18831.0 0 0 0

MA0490.3_rc_shift3 (JUNB_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0490.3_rc (JUNB_rc); m=3/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.599189; ---ATGAGTCAT--- ; cor=; Ncor= a 0 0 0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 0 0 0 c 0 0 0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 0 0 0 g 0 0 0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 0 0 0 t 0 0 0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0 0 0 0

MA0491.3_rc_shift3 (JUND_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0491.3_rc (JUND_rc); m=4/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.597216; ---ATGAGTCAt--- ; cor=; Ncor= a 0 0 0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 0 0 0 c 0 0 0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 0 0 0 g 0 0 0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 0 0 0 t 0 0 0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 0 0 0

MA0477.3_rc_shift3 (FOSL1_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0477.3_rc (FOSL1_rc); m=5/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.596112; ---aTGAGTCAt--- ; cor=; Ncor= a 0 0 0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 0 0 0 c 0 0 0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 0 0 0 g 0 0 0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 0 0 0 t 0 0 0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 0 0 0

MA1633.2_rc_shift3 (BACH1_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1633.2_rc (BACH1_rc); m=6/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.595221; ---aTGAGTCAT--- ; cor=; Ncor= a 0 0 0 32322.0 17.0 18.0 32322.0 517.0 14.0 811.0 32322.0 1048.0 0 0 0 c 0 0 0 2962.0 50.0 52.0 3303.0 0.0 24.0 32322.0 25.0 6187.0 0 0 0 g 0 0 0 8737.0 39.0 32322.0 31.0 32322.0 38.0 13.0 25.0 1482.0 0 0 0 t 0 0 0 4970.0 32322.0 2834.0 534.0 551.0 32322.0 0.0 7.0 32322.0 0 0 0

MA0655.1_rc_shift3 (JDP2_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0655.1_rc (JDP2_rc); m=7/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.594674; ---ATGASTCAT--- ; cor=; Ncor= a 0 0 0 1634.0 7.0 9.0 1634.0 13.0 25.0 22.0 1634.0 8.0 0 0 0 c 0 0 0 5.0 0.0 3.0 6.0 434.0 2.0 1634.0 1.0 140.0 0 0 0 g 0 0 0 404.0 0.0 1634.0 0.0 1200.0 1.0 3.0 6.0 19.0 0 0 0 t 0 0 0 22.0 1634.0 22.0 6.0 14.0 1634.0 0.0 5.0 1634.0 0 0 0

MA0478.2_rc_shift3 (FOSL2_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0478.2_rc (FOSL2_rc); m=8/30; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.594057; ---vTGAsTCAyy-- ; cor=; Ncor= a 0 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 494.0 0 0 c 0 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 2707.0 0 0 g 0 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 592.0 0 0 t 0 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0 1525.0 0 0

MA1141.2_shift3 (FOS::JUND)
; oligos_7nt_test_vs_ctrl_m3 versus MA1141.2 (FOS::JUND); m=9/30; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.590608; ---rTGAGTCAy--- ; cor=; Ncor= a 0 0 0 593.0 0.0 0.0 894.0 75.0 0.0 29.0 999.0 21.0 0 0 0 c 0 0 0 104.0 1.0 0.0 91.0 40.0 0.0 970.0 0.0 290.0 0 0 0 g 0 0 0 266.0 0.0 871.0 0.0 867.0 0.0 0.0 0.0 77.0 0 0 0 t 0 0 0 38.0 999.0 129.0 15.0 19.0 999.0 0.0 0.0 612.0 0 0 0

MA1128.2_rc_shift3 (FOSL1::JUN_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1128.2_rc (FOSL1::JUN_rc); m=10/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.589322; ---aTGAGTCAy--- ; cor=; Ncor= a 0 0 0 579.0 4.0 4.0 826.0 97.0 3.0 38.0 996.0 26.0 0 0 0 c 0 0 0 119.0 9.0 2.0 140.0 51.0 2.0 957.0 1.0 283.0 0 0 0 g 0 0 0 245.0 4.0 835.0 2.0 826.0 2.0 2.0 2.0 89.0 0 0 0 t 0 0 0 57.0 984.0 159.0 33.0 26.0 994.0 3.0 1.0 602.0 0 0 0

MA1134.2_shift3 (FOS::JUNB)
; oligos_7nt_test_vs_ctrl_m3 versus MA1134.2 (FOS::JUNB); m=11/30; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.587623; ---rTGAsTCAy--- ; cor=; Ncor= a 0 0 0 593.0 1.0 1.0 965.0 48.0 1.0 27.0 998.0 7.0 0 0 0 c 0 0 0 105.0 1.0 1.0 30.0 309.0 1.0 971.0 1.0 284.0 0 0 0 g 0 0 0 267.0 1.0 868.0 1.0 618.0 3.0 1.0 1.0 51.0 0 0 0 t 0 0 0 36.0 998.0 131.0 4.0 25.0 996.0 1.0 1.0 658.0 0 0 0

MA0099.4_shift3 (FOS::JUN)
; oligos_7nt_test_vs_ctrl_m3 versus MA0099.4 (FOS::JUN); m=12/30; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.586998; ---rTGAGTCAy--- ; cor=; Ncor= a 0 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 0 0 0 c 0 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 0 0 0 g 0 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 0 0 0 t 0 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 0 0 0

MA1130.2_shift3 (FOSL2::JUN)
; oligos_7nt_test_vs_ctrl_m3 versus MA1130.2 (FOSL2::JUN); m=13/30; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.586951; ---rTGAGTCAy--- ; cor=; Ncor= a 0 0 0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 0 0 0 c 0 0 0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 0 0 0 g 0 0 0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 0 0 0 t 0 0 0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 0 0 0

MA1144.2_rc_shift3 (FOSL2::JUND_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1144.2_rc (FOSL2::JUND_rc); m=14/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.586576; ---rTGAsTCAy--- ; cor=; Ncor= a 0 0 0 583.0 0.0 0.0 934.0 58.0 0.0 10.0 999.0 14.0 0 0 0 c 0 0 0 113.0 0.0 0.0 60.0 292.0 0.0 990.0 0.0 291.0 0 0 0 g 0 0 0 266.0 0.0 860.0 0.0 604.0 1.0 0.0 0.0 60.0 0 0 0 t 0 0 0 38.0 999.0 140.0 6.0 46.0 998.0 0.0 0.0 634.0 0 0 0

MA1137.2_rc_shift3 (FOSL1::JUNB_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1137.2_rc (FOSL1::JUNB_rc); m=15/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.585244; ---aTKAgTCAy--- ; cor=; Ncor= a 0 0 0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 0 0 0 c 0 0 0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 0 0 0 g 0 0 0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 0 0 0 t 0 0 0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 0 0 0

MA1138.2_rc_shift3 (FOSL2::JUNB_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1138.2_rc (FOSL2::JUNB_rc); m=16/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.585003; ---rTGAsTCAy--- ; cor=; Ncor= a 0 0 0 602.0 0.0 0.0 973.0 85.0 0.0 14.0 999.0 13.0 0 0 0 c 0 0 0 112.0 0.0 0.0 26.0 292.0 0.0 985.0 0.0 314.0 0 0 0 g 0 0 0 251.0 0.0 831.0 0.0 568.0 0.0 0.0 0.0 53.0 0 0 0 t 0 0 0 35.0 999.0 168.0 1.0 54.0 999.0 0.0 0.0 621.0 0 0 0

MA1135.2_rc_shift3 (FOSB::JUNB_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1135.2_rc (FOSB::JUNB_rc); m=17/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.583645; ---rTGAsTCAy--- ; cor=; Ncor= a 0 0 0 578.0 1.0 1.0 958.0 61.0 1.0 19.0 998.0 20.0 0 0 0 c 0 0 0 126.0 1.0 1.0 39.0 309.0 1.0 980.0 1.0 321.0 0 0 0 g 0 0 0 259.0 0.0 808.0 1.0 596.0 1.0 0.0 0.0 61.0 0 0 0 t 0 0 0 37.0 998.0 191.0 2.0 34.0 997.0 1.0 1.0 598.0 0 0 0

MA0089.3_rc_shift1 (MAFG::NFE2L1_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0089.3_rc (MAFG::NFE2L1_rc); m=18/30; ncol2=11; w=0; offset=1; strand=R; shift=1; score=0.562436; -TGCTGAGTCAT--- ; cor=; Ncor= a 0 293.0 26.0 263.0 98.0 97.0 3091.0 83.0 6.0 24.0 3337.0 11.0 0 0 0 c 0 142.0 33.0 3018.0 78.0 25.0 35.0 358.0 10.0 3308.0 2.0 706.0 0 0 0 g 0 64.0 3281.0 18.0 9.0 3049.0 12.0 2864.0 4.0 7.0 5.0 57.0 0 0 0 t 0 2857.0 16.0 57.0 3171.0 185.0 218.0 51.0 3336.0 17.0 12.0 2582.0 0 0 0

MA0501.2_rc_shift1 (MAF::NFE2_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0501.2_rc (MAF::NFE2_rc); m=19/30; ncol2=11; w=0; offset=1; strand=R; shift=1; score=0.543275; -TGCTGAGTCAy--- ; cor=; Ncor= a 0 69.0 5.0 37.0 61.0 51.0 967.0 37.0 0.0 8.0 1090.0 4.0 0 0 0 c 0 73.0 22.0 1041.0 51.0 22.0 12.0 166.0 0.0 1082.0 0.0 334.0 0 0 0 g 0 17.0 1063.0 4.0 0.0 937.0 1.0 871.0 0.0 0.0 0.0 26.0 0 0 0 t 0 931.0 0.0 8.0 978.0 80.0 110.0 16.0 1090.0 0.0 0.0 726.0 0 0 0

MA0489.3_rc_shift3 (Jun_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0489.3_rc (Jun_rc); m=20/30; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.532068; ---aTGAGTCA---- ; cor=; Ncor= a 0 0 0 61451.0 1633.0 969.0 89140.0 4185.0 1648.0 2739.0 91503.0 0 0 0 0 c 0 0 0 13040.0 1147.0 1228.0 1009.0 14953.0 1717.0 88928.0 718.0 0 0 0 0 g 0 0 0 14637.0 1827.0 88215.0 920.0 71105.0 1493.0 1468.0 716.0 0 0 0 0 t 0 0 0 4975.0 89496.0 3691.0 3034.0 3860.0 89245.0 968.0 1166.0 0 0 0 0

MA0150.3_rc_shift1 (Nfe2l2_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0150.3_rc (Nfe2l2_rc); m=21/30; ncol2=11; w=0; offset=1; strand=R; shift=1; score=0.526553; -TGCTGAGTCAy--- ; cor=; Ncor= a 0 46.0 4.0 7.0 56.0 66.0 606.0 55.0 0.0 15.0 726.0 5.0 0 0 0 c 0 31.0 19.0 698.0 90.0 46.0 16.0 118.0 0.0 711.0 0.0 205.0 0 0 0 g 0 26.0 699.0 11.0 3.0 549.0 20.0 533.0 0.0 0.0 0.0 28.0 0 0 0 t 0 623.0 4.0 10.0 577.0 65.0 84.0 20.0 726.0 0.0 0.0 488.0 0 0 0

MA0476.2_rc_shift3 (FOS_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0476.2_rc (FOS_rc); m=22/30; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.520871; ---ATGAsTCA---- ; cor=; Ncor= a 0 0 0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 0 0 0 0 c 0 0 0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 0 0 0 0 g 0 0 0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 0 0 0 0

MA1142.2_rc_shift4 (FOSL1::JUND_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1142.2_rc (FOSL1::JUND_rc); m=23/30; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.516278; ----TkagTCAy--- ; cor=; Ncor= a 0 0 0 0 31.0 64.0 669.0 180.0 41.0 140.0 913.0 40.0 0 0 0 c 0 0 0 0 17.0 25.0 187.0 191.0 82.0 777.0 34.0 282.0 0 0 0 g 0 0 0 0 40.0 641.0 45.0 581.0 12.0 61.0 23.0 127.0 0 0 0 t 0 0 0 0 912.0 270.0 98.0 49.0 864.0 22.0 30.0 551.0 0 0 0

MA1132.2_rc_shift4 (JUN::JUNB_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1132.2_rc (JUN::JUNB_rc); m=24/30; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.512489; ----TGmGTCAt--- ; cor=; Ncor= a 0 0 0 0 27.0 122.0 565.0 33.0 18.0 47.0 946.0 50.0 0 0 0 c 0 0 0 0 18.0 10.0 353.0 115.0 28.0 921.0 34.0 189.0 0 0 0 g 0 0 0 0 24.0 707.0 24.0 826.0 10.0 21.0 10.0 134.0 0 0 0 t 0 0 0 0 931.0 161.0 58.0 27.0 944.0 10.0 11.0 627.0 0 0 0

MA0496.4_rc_shift2 (MAFK_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0496.4_rc (MAFK_rc); m=25/30; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.509207; --GCTGAGTCAk--- ; cor=; Ncor= a 0 0 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 0 0 0 c 0 0 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 0 0 0 g 0 0 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 0 0 0 t 0 0 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0 0 0 0

MA1928.2_shift4 (BNC2)
; oligos_7nt_test_vs_ctrl_m3 versus MA1928.2 (BNC2); m=26/30; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.466323; ----TGAGTCA---- ; cor=; Ncor= a 0 0 0 0 147.0 134.0 5303.0 227.0 86.0 216.0 5483.0 0 0 0 0 c 0 0 0 0 66.0 72.0 117.0 838.0 106.0 5238.0 54.0 0 0 0 0 g 0 0 0 0 96.0 5184.0 61.0 4332.0 80.0 112.0 56.0 0 0 0 0 t 0 0 0 0 5363.0 282.0 191.0 275.0 5400.0 106.0 79.0 0 0 0 0

MA1634.2_rc_shift4 (BATF_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1634.2_rc (BATF_rc); m=27/30; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.466096; ----TGAGTCA---- ; cor=; Ncor= a 0 0 0 0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 0 0 0 0 c 0 0 0 0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 0 0 0 0 g 0 0 0 0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 0 0 0 0 t 0 0 0 0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 0 0 0 0

MA1988.2_rc_shift4 (Atf3_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA1988.2_rc (Atf3_rc); m=28/30; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.466051; ----TGAGTCA---- ; cor=; Ncor= a 0 0 0 0 887.0 2087.0 50485.0 2262.0 547.0 3914.0 53085.0 0 0 0 0 c 0 0 0 0 1086.0 574.0 1365.0 4498.0 471.0 48774.0 357.0 0 0 0 0 g 0 0 0 0 673.0 46610.0 504.0 45670.0 356.0 443.0 669.0 0 0 0 0 t 0 0 0 0 52046.0 5421.0 2338.0 2262.0 53318.0 1561.0 581.0 0 0 0 0

MA0462.3_rc_shift4 (BATF::JUN_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0462.3_rc (BATF::JUN_rc); m=29/30; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.466035; ----TGAGTCA---- ; cor=; Ncor= a 0 0 0 0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 0 0 0 0 c 0 0 0 0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 0 0 0 0 g 0 0 0 0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 0 0 0 0 t 0 0 0 0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 0 0 0 0

MA0835.3_rc_shift4 (BATF3_rc)
; oligos_7nt_test_vs_ctrl_m3 versus MA0835.3_rc (BATF3_rc); m=30/30; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.465521; ----TGAGTCA---- ; cor=; Ncor= a 0 0 0 0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 0 0 0 0 c 0 0 0 0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 0 0 0 0 g 0 0 0 0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 0 0 0 0 t 0 0 0 0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift3 ; 38 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift3 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---wtAGTCATAww ; Alignment reference a 0 0 0 3555 3085 11561 987 696 896 12358 295 10949 3696 3956 c 0 0 0 1710 2379 127 828 340 11108 231 358 594 2487 2859 g 0 0 0 2296 3185 385 10135 355 456 75 245 393 2321 2134 t 0 0 0 5480 4392 968 1091 11650 581 377 12143 1105 4537 4092

MA1132.2_rc_shift3 (JUN::JUNB_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1132.2_rc (JUN::JUNB_rc); m=1/37; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.620859; ---TGmGTCAt--- ; cor=; Ncor= a 0 0 0 27.0 122.0 565.0 33.0 18.0 47.0 946.0 50.0 0 0 0 c 0 0 0 18.0 10.0 353.0 115.0 28.0 921.0 34.0 189.0 0 0 0 g 0 0 0 24.0 707.0 24.0 826.0 10.0 21.0 10.0 134.0 0 0 0 t 0 0 0 931.0 161.0 58.0 27.0 944.0 10.0 11.0 627.0 0 0 0

MA1142.2_rc_shift3 (FOSL1::JUND_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1142.2_rc (FOSL1::JUND_rc); m=2/37; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.617937; ---TkagTCAy--- ; cor=; Ncor= a 0 0 0 31.0 64.0 669.0 180.0 41.0 140.0 913.0 40.0 0 0 0 c 0 0 0 17.0 25.0 187.0 191.0 82.0 777.0 34.0 282.0 0 0 0 g 0 0 0 40.0 641.0 45.0 581.0 12.0 61.0 23.0 127.0 0 0 0 t 0 0 0 912.0 270.0 98.0 49.0 864.0 22.0 30.0 551.0 0 0 0

MA0476.2_shift3 (FOS)
; oligos_6nt_test_vs_ctrl_m4 versus MA0476.2 (FOS); m=3/37; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.600214; ---TGAsTCAT--- ; cor=; Ncor= a 0 0 0 0.0 0.0 29396.0 998.0 0.0 0.0 29396.0 258.0 0 0 0 c 0 0 0 0.0 0.0 0.0 14079.0 0.0 29396.0 0.0 5823.0 0 0 0 g 0 0 0 0.0 27108.0 0.0 11206.0 0.0 0.0 0.0 1538.0 0 0 0 t 0 0 0 29396.0 2288.0 0.0 3113.0 29396.0 0.0 0.0 21777.0 0 0 0

MA1633.2_rc_shift2 (BACH1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1633.2_rc (BACH1_rc); m=4/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.587285; --aTGAGTCAT--- ; cor=; Ncor= a 0 0 32322.0 17.0 18.0 32322.0 517.0 14.0 811.0 32322.0 1048.0 0 0 0 c 0 0 2962.0 50.0 52.0 3303.0 0.0 24.0 32322.0 25.0 6187.0 0 0 0 g 0 0 8737.0 39.0 32322.0 31.0 32322.0 38.0 13.0 25.0 1482.0 0 0 0 t 0 0 4970.0 32322.0 2834.0 534.0 551.0 32322.0 0.0 7.0 32322.0 0 0 0

MA0655.1_rc_shift2 (JDP2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0655.1_rc (JDP2_rc); m=5/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.582007; --ATGASTCAT--- ; cor=; Ncor= a 0 0 1634.0 7.0 9.0 1634.0 13.0 25.0 22.0 1634.0 8.0 0 0 0 c 0 0 5.0 0.0 3.0 6.0 434.0 2.0 1634.0 1.0 140.0 0 0 0 g 0 0 404.0 0.0 1634.0 0.0 1200.0 1.0 3.0 6.0 19.0 0 0 0 t 0 0 22.0 1634.0 22.0 6.0 14.0 1634.0 0.0 5.0 1634.0 0 0 0

MA1137.2_rc_shift2 (FOSL1::JUNB_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1137.2_rc (FOSL1::JUNB_rc); m=6/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.580972; --aTKAgTCAy--- ; cor=; Ncor= a 0 0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 0 0 0 c 0 0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 0 0 0 g 0 0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 0 0 0 t 0 0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 0 0 0

MA0490.3_rc_shift2 (JUNB_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0490.3_rc (JUNB_rc); m=7/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.579857; --ATGAGTCAT--- ; cor=; Ncor= a 0 0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 0 0 0 c 0 0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 0 0 0 g 0 0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 0 0 0 t 0 0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0 0 0 0

MA1141.2_shift2 (FOS::JUND)
; oligos_6nt_test_vs_ctrl_m4 versus MA1141.2 (FOS::JUND); m=8/37; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.575134; --rTGAGTCAy--- ; cor=; Ncor= a 0 0 593.0 0.0 0.0 894.0 75.0 0.0 29.0 999.0 21.0 0 0 0 c 0 0 104.0 1.0 0.0 91.0 40.0 0.0 970.0 0.0 290.0 0 0 0 g 0 0 266.0 0.0 871.0 0.0 867.0 0.0 0.0 0.0 77.0 0 0 0 t 0 0 38.0 999.0 129.0 15.0 19.0 999.0 0.0 0.0 612.0 0 0 0

MA1128.2_rc_shift2 (FOSL1::JUN_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1128.2_rc (FOSL1::JUN_rc); m=9/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.574508; --aTGAGTCAy--- ; cor=; Ncor= a 0 0 579.0 4.0 4.0 826.0 97.0 3.0 38.0 996.0 26.0 0 0 0 c 0 0 119.0 9.0 2.0 140.0 51.0 2.0 957.0 1.0 283.0 0 0 0 g 0 0 245.0 4.0 835.0 2.0 826.0 2.0 2.0 2.0 89.0 0 0 0 t 0 0 57.0 984.0 159.0 33.0 26.0 994.0 3.0 1.0 602.0 0 0 0

MA0491.3_rc_shift2 (JUND_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0491.3_rc (JUND_rc); m=10/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.571723; --ATGAGTCAt--- ; cor=; Ncor= a 0 0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 0 0 0 c 0 0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 0 0 0 g 0 0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 0 0 0 t 0 0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 0 0 0

MA1134.2_shift2 (FOS::JUNB)
; oligos_6nt_test_vs_ctrl_m4 versus MA1134.2 (FOS::JUNB); m=11/37; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.569122; --rTGAsTCAy--- ; cor=; Ncor= a 0 0 593.0 1.0 1.0 965.0 48.0 1.0 27.0 998.0 7.0 0 0 0 c 0 0 105.0 1.0 1.0 30.0 309.0 1.0 971.0 1.0 284.0 0 0 0 g 0 0 267.0 1.0 868.0 1.0 618.0 3.0 1.0 1.0 51.0 0 0 0 t 0 0 36.0 998.0 131.0 4.0 25.0 996.0 1.0 1.0 658.0 0 0 0

MA0477.3_rc_shift2 (FOSL1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0477.3_rc (FOSL1_rc); m=12/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.569049; --aTGAGTCAt--- ; cor=; Ncor= a 0 0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 0 0 0 c 0 0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 0 0 0 g 0 0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 0 0 0 t 0 0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 0 0 0

MA1130.2_shift2 (FOSL2::JUN)
; oligos_6nt_test_vs_ctrl_m4 versus MA1130.2 (FOSL2::JUN); m=13/37; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.568229; --rTGAGTCAy--- ; cor=; Ncor= a 0 0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 0 0 0 c 0 0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 0 0 0 g 0 0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 0 0 0 t 0 0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 0 0 0

MA1135.2_rc_shift2 (FOSB::JUNB_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1135.2_rc (FOSB::JUNB_rc); m=14/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.56775; --rTGAsTCAy--- ; cor=; Ncor= a 0 0 578.0 1.0 1.0 958.0 61.0 1.0 19.0 998.0 20.0 0 0 0 c 0 0 126.0 1.0 1.0 39.0 309.0 1.0 980.0 1.0 321.0 0 0 0 g 0 0 259.0 0.0 808.0 1.0 596.0 1.0 0.0 0.0 61.0 0 0 0 t 0 0 37.0 998.0 191.0 2.0 34.0 997.0 1.0 1.0 598.0 0 0 0

MA1138.2_rc_shift2 (FOSL2::JUNB_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1138.2_rc (FOSL2::JUNB_rc); m=15/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.567126; --rTGAsTCAy--- ; cor=; Ncor= a 0 0 602.0 0.0 0.0 973.0 85.0 0.0 14.0 999.0 13.0 0 0 0 c 0 0 112.0 0.0 0.0 26.0 292.0 0.0 985.0 0.0 314.0 0 0 0 g 0 0 251.0 0.0 831.0 0.0 568.0 0.0 0.0 0.0 53.0 0 0 0 t 0 0 35.0 999.0 168.0 1.0 54.0 999.0 0.0 0.0 621.0 0 0 0

MA1144.2_rc_shift2 (FOSL2::JUND_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1144.2_rc (FOSL2::JUND_rc); m=16/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.566763; --rTGAsTCAy--- ; cor=; Ncor= a 0 0 583.0 0.0 0.0 934.0 58.0 0.0 10.0 999.0 14.0 0 0 0 c 0 0 113.0 0.0 0.0 60.0 292.0 0.0 990.0 0.0 291.0 0 0 0 g 0 0 266.0 0.0 860.0 0.0 604.0 1.0 0.0 0.0 60.0 0 0 0 t 0 0 38.0 999.0 140.0 6.0 46.0 998.0 0.0 0.0 634.0 0 0 0

MA0835.3_rc_shift3 (BATF3_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0835.3_rc (BATF3_rc); m=17/37; ncol2=7; w=0; offset=0; strand=R; shift=3; score=0.565784; ---TGAGTCA---- ; cor=; Ncor= a 0 0 0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 0 0 0 0 c 0 0 0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 0 0 0 0 g 0 0 0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 0 0 0 0 t 0 0 0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 0 0 0 0

MA1988.2_rc_shift3 (Atf3_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1988.2_rc (Atf3_rc); m=18/37; ncol2=7; w=0; offset=0; strand=R; shift=3; score=0.565524; ---TGAGTCA---- ; cor=; Ncor= a 0 0 0 887.0 2087.0 50485.0 2262.0 547.0 3914.0 53085.0 0 0 0 0 c 0 0 0 1086.0 574.0 1365.0 4498.0 471.0 48774.0 357.0 0 0 0 0 g 0 0 0 673.0 46610.0 504.0 45670.0 356.0 443.0 669.0 0 0 0 0 t 0 0 0 52046.0 5421.0 2338.0 2262.0 53318.0 1561.0 581.0 0 0 0 0

MA0099.4_shift2 (FOS::JUN)
; oligos_6nt_test_vs_ctrl_m4 versus MA0099.4 (FOS::JUN); m=19/37; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.565437; --rTGAGTCAy--- ; cor=; Ncor= a 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 0 0 0 c 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 0 0 0 g 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 0 0 0 t 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 0 0 0

MA0462.3_rc_shift3 (BATF::JUN_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0462.3_rc (BATF::JUN_rc); m=20/37; ncol2=7; w=0; offset=0; strand=R; shift=3; score=0.563671; ---TGAGTCA---- ; cor=; Ncor= a 0 0 0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 0 0 0 0 c 0 0 0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 0 0 0 0 g 0 0 0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 0 0 0 0 t 0 0 0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 0 0 0 0

MA1634.2_rc_shift3 (BATF_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1634.2_rc (BATF_rc); m=21/37; ncol2=7; w=0; offset=0; strand=R; shift=3; score=0.562702; ---TGAGTCA---- ; cor=; Ncor= a 0 0 0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 0 0 0 0 c 0 0 0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 0 0 0 0 g 0 0 0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 0 0 0 0 t 0 0 0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 0 0 0 0

MA1928.2_shift3 (BNC2)
; oligos_6nt_test_vs_ctrl_m4 versus MA1928.2 (BNC2); m=22/37; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.556035; ---TGAGTCA---- ; cor=; Ncor= a 0 0 0 147.0 134.0 5303.0 227.0 86.0 216.0 5483.0 0 0 0 0 c 0 0 0 66.0 72.0 117.0 838.0 106.0 5238.0 54.0 0 0 0 0 g 0 0 0 96.0 5184.0 61.0 4332.0 80.0 112.0 56.0 0 0 0 0 t 0 0 0 5363.0 282.0 191.0 275.0 5400.0 106.0 79.0 0 0 0 0

MA0478.2_rc_shift2 (FOSL2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0478.2_rc (FOSL2_rc); m=23/37; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.54184; --vTGAsTCAyy-- ; cor=; Ncor= a 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 494.0 0 0 c 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 2707.0 0 0 g 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 592.0 0 0 t 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0 1525.0 0 0

MA0489.3_shift3 (Jun)
; oligos_6nt_test_vs_ctrl_m4 versus MA0489.3 (Jun); m=24/37; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.539846; ---TGACTCAt--- ; cor=; Ncor= a 0 0 0 1166.0 968.0 89245.0 3860.0 3034.0 3691.0 89496.0 4975.0 0 0 0 c 0 0 0 716.0 1468.0 1493.0 71105.0 920.0 88215.0 1827.0 14637.0 0 0 0 g 0 0 0 718.0 88928.0 1717.0 14953.0 1009.0 1228.0 1147.0 13040.0 0 0 0 t 0 0 0 91503.0 2739.0 1648.0 4185.0 89140.0 969.0 1633.0 61451.0 0 0 0

MA0841.2_rc_shift1 (NFE2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0841.2_rc (NFE2_rc); m=25/37; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.538858; -sATGAGTCAT--- ; cor=; Ncor= a 0 3417.0 18831.0 5.0 3.0 18831.0 17.0 4.0 2.0 18831.0 5.0 0 0 0 c 0 5067.0 10.0 8.0 0.0 3.0 4472.0 0.0 18831.0 0.0 1306.0 0 0 0 g 0 9860.0 2689.0 13.0 18831.0 20.0 14360.0 11.0 0.0 8.0 9.0 0 0 0 t 0 487.0 0.0 18831.0 1.0 0.0 37.0 18831.0 0.0 2.0 18831.0 0 0 0

MA0150.3_rc_shift0 (Nfe2l2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0150.3_rc (Nfe2l2_rc); m=26/37; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.514591; TGCTGAGTCAy--- ; cor=; Ncor= a 46.0 4.0 7.0 56.0 66.0 606.0 55.0 0.0 15.0 726.0 5.0 0 0 0 c 31.0 19.0 698.0 90.0 46.0 16.0 118.0 0.0 711.0 0.0 205.0 0 0 0 g 26.0 699.0 11.0 3.0 549.0 20.0 533.0 0.0 0.0 0.0 28.0 0 0 0 t 623.0 4.0 10.0 577.0 65.0 84.0 20.0 726.0 0.0 0.0 488.0 0 0 0

MA1101.3_rc_shift1 (BACH2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1101.3_rc (BACH2_rc); m=27/37; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.505731; -sATGAsTCATG-- ; cor=; Ncor= a 0 5274.0 63746.0 0.0 3.0 67975.0 18.0 6.0 54.0 68266.0 0.0 8116.0 0 0 c 0 30498.0 2028.0 11.0 0.0 856.0 30785.0 13.0 68240.0 1.0 15304.0 6727.0 0 0 g 0 35220.0 11634.0 2.0 68215.0 20.0 37438.0 1088.0 0.0 7.0 260.0 61580.0 0 0 t 0 4522.0 47.0 68264.0 115.0 3.0 50.0 67846.0 6.0 1.0 62993.0 9369.0 0 0

MA0089.3_rc_shift0 (MAFG::NFE2L1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0089.3_rc (MAFG::NFE2L1_rc); m=28/37; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.505409; TGCTGAGTCAT--- ; cor=; Ncor= a 293.0 26.0 263.0 98.0 97.0 3091.0 83.0 6.0 24.0 3337.0 11.0 0 0 0 c 142.0 33.0 3018.0 78.0 25.0 35.0 358.0 10.0 3308.0 2.0 706.0 0 0 0 g 64.0 3281.0 18.0 9.0 3049.0 12.0 2864.0 4.0 7.0 5.0 57.0 0 0 0 t 2857.0 16.0 57.0 3171.0 185.0 218.0 51.0 3336.0 17.0 12.0 2582.0 0 0 0

MA1143.2_rc_shift2 (FOSL1::JUND_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA1143.2_rc (FOSL1::JUND_rc); m=29/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.504913; --tkrcGTCAy--- ; cor=; Ncor= a 0 0 188.0 41.0 582.0 176.0 68.0 44.0 82.0 870.0 40.0 0 0 0 c 0 0 100.0 83.0 39.0 649.0 64.0 41.0 777.0 44.0 324.0 0 0 0 g 0 0 66.0 330.0 262.0 59.0 835.0 45.0 101.0 50.0 75.0 0 0 0 t 0 0 645.0 546.0 117.0 116.0 32.0 870.0 39.0 36.0 561.0 0 0 0

MA0676.1_shift2 (Nr2e1)
; oligos_6nt_test_vs_ctrl_m4 versus MA0676.1 (Nr2e1); m=30/37; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score= 0.5036; --aaAAGTCAA--- ; cor=; Ncor= a 0 0 1118.0 1118.0 1118.0 1118.0 40.0 0.0 11.0 1118.0 1118.0 0 0 0 c 0 0 244.0 89.0 1.0 0.0 0.0 58.0 1118.0 0.0 131.0 0 0 0 g 0 0 191.0 448.0 101.0 74.0 1118.0 0.0 12.0 0.0 117.0 0 0 0 t 0 0 401.0 369.0 19.0 5.0 8.0 1118.0 112.0 0.0 247.0 0 0 0

MA0501.2_rc_shift0 (MAF::NFE2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0501.2_rc (MAF::NFE2_rc); m=31/37; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.502443; TGCTGAGTCAy--- ; cor=; Ncor= a 69.0 5.0 37.0 61.0 51.0 967.0 37.0 0.0 8.0 1090.0 4.0 0 0 0 c 73.0 22.0 1041.0 51.0 22.0 12.0 166.0 0.0 1082.0 0.0 334.0 0 0 0 g 17.0 1063.0 4.0 0.0 937.0 1.0 871.0 0.0 0.0 0.0 26.0 0 0 0 t 931.0 0.0 8.0 978.0 80.0 110.0 16.0 1090.0 0.0 0.0 726.0 0 0 0

MA0905.2_shift6 (HOXC10)
; oligos_6nt_test_vs_ctrl_m4 versus MA0905.2 (HOXC10); m=32/37; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.491137; ------rTCrTwAA ; cor=; Ncor= a 0 0 0 0 0 0 1495.0 26.0 315.0 2638.0 27.0 2165.0 3211.0 3211.0 c 0 0 0 0 0 0 1044.0 245.0 3211.0 6.0 0.0 5.0 3.0 76.0 g 0 0 0 0 0 0 3211.0 0.0 12.0 3211.0 0.0 4.0 5.0 86.0 t 0 0 0 0 0 0 15.0 3211.0 152.0 24.0 3211.0 1047.0 102.0 187.0

MA0591.2_rc_shift0 (Bach1::Mafk_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0591.2_rc (Bach1::Mafk_rc); m=33/37; ncol2=12; w=-3; offset=-3; strand=R; shift=0; score=0.47738; TGCTGAGTCAys-- ; cor=; Ncor= a 6.0 0.0 0.0 2.0 0.0 109.0 0.0 1.0 7.0 111.0 0.0 4.0 0 0 c 6.0 0.0 113.0 3.0 2.0 4.0 20.0 0.0 107.0 0.0 32.0 54.0 0 0 g 4.0 114.0 1.0 1.0 107.0 0.0 94.0 0.0 0.0 1.0 16.0 41.0 0 0 t 98.0 0.0 0.0 108.0 5.0 1.0 0.0 113.0 0.0 2.0 66.0 15.0 0 0

MA0496.4_rc_shift1 (MAFK_rc)
; oligos_6nt_test_vs_ctrl_m4 versus MA0496.4_rc (MAFK_rc); m=34/37; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score= 0.4751; -GCTGAGTCAk--- ; cor=; Ncor= a 0 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 0 0 0 c 0 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 0 0 0 g 0 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 0 0 0 t 0 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0 0 0 0

MA1473.2_shift6 (CDX4)
; oligos_6nt_test_vs_ctrl_m4 versus MA1473.2 (CDX4); m=35/37; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.473922; ------GymATAAA ; cor=; Ncor= a 0 0 0 0 0 0 2533.0 0.0 12392.0 23367.0 0.0 23367.0 23367.0 23367.0 c 0 0 0 0 0 0 1064.0 14682.0 10976.0 0.0 0.0 0.0 0.0 57.0 g 0 0 0 0 0 0 23367.0 0.0 25.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 98.0 8686.0 0.0 0.0 23367.0 0.0 0.0 0.0

MA1503.2_shift6 (HOXB9)
; oligos_6nt_test_vs_ctrl_m4 versus MA1503.2 (HOXB9); m=36/37; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.469879; ------gTCRTAAA ; cor=; Ncor= a 0 0 0 0 0 0 622.0 0.0 0.0 644.0 0.0 1842.0 1842.0 1842.0 c 0 0 0 0 0 0 280.0 43.0 1842.0 6.0 0.0 12.0 0.0 42.0 g 0 0 0 0 0 0 1842.0 0.0 0.0 1842.0 1.0 3.0 0.0 0.0 t 0 0 0 0 0 0 2.0 1842.0 0.0 0.0 1842.0 462.0 0.0 17.0

MA0485.3_shift6 (HOXC9)
; oligos_6nt_test_vs_ctrl_m4 versus MA0485.3 (HOXC9); m=37/37; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.467195; ------GTCGTAAA ; cor=; Ncor= a 0 0 0 0 0 0 4347.0 0.0 0.0 4250.0 5.0 15541.0 15541.0 15541.0 c 0 0 0 0 0 0 1760.0 147.0 15541.0 0.0 5.0 0.0 0.0 12.0 g 0 0 0 0 0 0 15541.0 0.0 0.0 15541.0 11.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0.0 15541.0 0.0 0.0 15541.0 2094.0 0.0 0.0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift2 ; 18 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift2 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=10; shift=2; ncol=12; --wtACTTATww ; Alignment reference a 0 0 1261 827 3641 86 313 69 3791 37 1190 959 c 0 0 707 928 27 3590 36 21 8 134 674 756 g 0 0 639 754 89 20 487 9 5 11 822 653 t 0 0 1202 1300 52 113 2973 3710 5 3627 1123 1441

MA0124.3_shift2 (Nkx3-1)
; oligos_6nt_test_vs_ctrl_m3 versus MA0124.3 (Nkx3-1); m=1/17; ncol2=7; w=0; offset=0; strand=D; shift=2; score=0.601632; --cCACTTA--- ; cor=; Ncor= a 0 0 981.0 0.0 5335.0 59.0 0.0 0.0 5335.0 0 0 0 c 0 0 5335.0 5335.0 28.0 5335.0 1.0 254.0 273.0 0 0 0 g 0 0 1776.0 10.0 10.0 9.0 0.0 0.0 173.0 0 0 0 t 0 0 275.0 336.0 88.0 9.0 5335.0 5335.0 523.0 0 0 0

MA0036.4_shift5 (GATA2)
; oligos_6nt_test_vs_ctrl_m3 versus MA0036.4 (GATA2); m=2/17; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.595669; -----CTTATCT ; cor=; Ncor= a 0 0 0 0 0 940.0 444.0 417.0 14098.0 145.0 96.0 2373.0 c 0 0 0 0 0 10607.0 259.0 34.0 14.0 77.0 13786.0 492.0 g 0 0 0 0 0 1223.0 150.0 21.0 43.0 48.0 126.0 367.0 t 0 0 0 0 0 1443.0 13360.0 13741.0 58.0 13943.0 205.0 10981.0

MA0482.3_shift4 (GATA4)
; oligos_6nt_test_vs_ctrl_m3 versus MA0482.3 (GATA4); m=3/17; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.56832; ----cCTTATCT ; cor=; Ncor= a 0 0 0 0 3977.0 3150.0 1586.0 1650.0 54420.0 770.0 480.0 7659.0 c 0 0 0 0 38289.0 50062.0 1429.0 1377.0 1703.0 582.0 56544.0 1792.0 g 0 0 0 0 5099.0 1103.0 749.0 808.0 1245.0 539.0 568.0 1376.0 t 0 0 0 0 11649.0 4699.0 55250.0 55179.0 1646.0 57123.0 1422.0 48187.0

MA1104.3_shift4 (GATA6)
; oligos_6nt_test_vs_ctrl_m3 versus MA1104.3 (GATA6); m=4/17; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.567726; ----TCTTATCT ; cor=; Ncor= a 0 0 0 0 5912.0 4535.0 2560.0 5044.0 76686.0 1507.0 1096.0 13149.0 c 0 0 0 0 11831.0 62936.0 1439.0 1393.0 815.0 852.0 75930.0 3228.0 g 0 0 0 0 7066.0 6459.0 580.0 615.0 819.0 456.0 712.0 1810.0 t 0 0 0 0 54635.0 5514.0 74865.0 72392.0 1124.0 76629.0 1706.0 61257.0

MA1970.2_shift4 (TRPS1)
; oligos_6nt_test_vs_ctrl_m3 versus MA1970.2 (TRPS1); m=5/17; ncol2=8; w=0; offset=2; strand=D; shift=4; score= 0.5672; ----TCTTATCT ; cor=; Ncor= a 0 0 0 0 1359.0 941.0 645.0 874.0 17440.0 312.0 252.0 2790.0 c 0 0 0 0 2547.0 14262.0 560.0 462.0 215.0 265.0 17146.0 792.0 g 0 0 0 0 1749.0 1426.0 320.0 449.0 329.0 179.0 263.0 716.0 t 0 0 0 0 12628.0 1654.0 16758.0 16498.0 299.0 17527.0 622.0 13985.0

MA0037.5_shift4 (Gata3)
; oligos_6nt_test_vs_ctrl_m3 versus MA0037.5 (Gata3); m=6/17; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.562307; ----tCTTATCT ; cor=; Ncor= a 0 0 0 0 2016.0 946.0 794.0 984.0 22974.0 427.0 294.0 3100.0 c 0 0 0 0 3859.0 19702.0 928.0 758.0 566.0 282.0 23839.0 903.0 g 0 0 0 0 2551.0 2165.0 280.0 960.0 528.0 291.0 255.0 608.0 t 0 0 0 0 16442.0 2055.0 22866.0 22166.0 800.0 23868.0 480.0 20257.0

MA0122.4_shift0 (Nkx3-2)
; oligos_6nt_test_vs_ctrl_m3 versus MA0122.4 (Nkx3-2); m=7/17; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.522916; aamCACTTAa-- ; cor=; Ncor= a 5714.0 5598.0 2604.0 79.0 9907.0 151.0 50.0 95.0 9680.0 5620.0 0 0 c 952.0 1109.0 5079.0 9900.0 82.0 9965.0 32.0 138.0 147.0 991.0 0 0 g 1466.0 1154.0 1504.0 23.0 19.0 10.0 29.0 68.0 68.0 1368.0 0 0 t 2088.0 2359.0 1033.0 218.0 212.0 94.0 10109.0 9919.0 325.0 2241.0 0 0

MA0914.2_shift3 (ISL2)
; oligos_6nt_test_vs_ctrl_m3 versus MA0914.2 (ISL2); m=8/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.520318; ---CAmTTA--- ; cor=; Ncor= a 0 0 0 160.0 5631.0 3161.0 218.0 278.0 5631.0 0 0 0 c 0 0 0 5631.0 162.0 5631.0 130.0 718.0 206.0 0 0 0 g 0 0 0 126.0 134.0 171.0 169.0 13.0 59.0 0 0 0 t 0 0 0 1019.0 248.0 398.0 5631.0 5631.0 1354.0 0 0 0

MA0035.5_shift5 (GATA1)
; oligos_6nt_test_vs_ctrl_m3 versus MA0035.5 (GATA1); m=9/17; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.50095; -----CTWATCT ; cor=; Ncor= a 0 0 0 0 0 3953.0 1314.0 49692.0 67550.0 2206.0 2567.0 7397.0 c 0 0 0 0 0 62419.0 595.0 710.0 1292.0 1238.0 65937.0 3025.0 g 0 0 0 0 0 2712.0 652.0 856.0 988.0 618.0 1471.0 765.0 t 0 0 0 0 0 2744.0 69267.0 20570.0 1998.0 67766.0 1853.0 60641.0

MA1963.2_rc_shift6 (SATB1_rc)
; oligos_6nt_test_vs_ctrl_m3 versus MA1963.2_rc (SATB1_rc); m=10/17; ncol2=7; w=0; offset=4; strand=R; shift=6; score=0.439601; ------TTATTA ; cor=; Ncor= a 0 0 0 0 0 0 1612.0 841.0 33685.0 1281.0 169.0 33500.0 c 0 0 0 0 0 0 1071.0 889.0 123.0 120.0 221.0 37.0 g 0 0 0 0 0 0 881.0 485.0 128.0 115.0 164.0 195.0 t 0 0 0 0 0 0 30660.0 32009.0 288.0 32708.0 33670.0 492.0

MA1577.2_shift3 (TLX2)
; oligos_6nt_test_vs_ctrl_m3 versus MA1577.2 (TLX2); m=11/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.430997; ---yAATTA--- ; cor=; Ncor= a 0 0 0 1435.0 7799.0 7799.0 0.0 0.0 7799.0 0 0 0 c 0 0 0 7799.0 0.0 0.0 0.0 0.0 0.0 0 0 0 g 0 0 0 1112.0 80.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 8156.0 0.0 0.0 7799.0 7799.0 0.0 0 0 0

MA0125.2_rc_shift3 (Nobox_rc)
; oligos_6nt_test_vs_ctrl_m3 versus MA0125.2_rc (Nobox_rc); m=12/17; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.430333; ---yAATTA--- ; cor=; Ncor= a 0 0 0 1.0 32.0 34.0 0.0 2.0 37.0 0 0 0 c 0 0 0 22.0 4.0 2.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0.0 0.0 1.0 0.0 0.0 1.0 0 0 0 t 0 0 0 15.0 2.0 1.0 38.0 36.0 0.0 0 0 0

MA0699.2_shift3 (LBX2)
; oligos_6nt_test_vs_ctrl_m3 versus MA0699.2 (LBX2); m=13/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.429145; ---yAATTA--- ; cor=; Ncor= a 0 0 0 157.0 2996.0 2996.0 0.0 150.0 2996.0 0 0 0 c 0 0 0 1634.0 338.0 290.0 29.0 258.0 34.0 0 0 0 g 0 0 0 109.0 325.0 130.0 118.0 293.0 106.0 0 0 0 t 0 0 0 1362.0 57.0 89.0 2996.0 2996.0 148.0 0 0 0

MA0654.2_shift3 (ISX)
; oligos_6nt_test_vs_ctrl_m3 versus MA0654.2 (ISX); m=14/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.425665; ---yAATTA--- ; cor=; Ncor= a 0 0 0 10.0 2065.0 2065.0 0.0 0.0 2065.0 0 0 0 c 0 0 0 1003.0 48.0 16.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0.0 5.0 0.0 0.0 24.0 0.0 0 0 0 t 0 0 0 1061.0 24.0 10.0 2065.0 2065.0 49.0 0 0 0

MA0718.2_shift3 (RAX)
; oligos_6nt_test_vs_ctrl_m3 versus MA0718.2 (RAX); m=15/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.425221; ---yAATTA--- ; cor=; Ncor= a 0 0 0 214.0 2412.0 2412.0 123.0 71.0 2412.0 0 0 0 c 0 0 0 1281.0 17.0 38.0 0.0 71.0 0.0 0 0 0 g 0 0 0 25.0 3.0 12.0 0.0 49.0 20.0 0 0 0 t 0 0 0 1131.0 40.0 24.0 2412.0 2412.0 126.0 0 0 0

MA0894.2_rc_shift3 (HESX1_rc)
; oligos_6nt_test_vs_ctrl_m3 versus MA0894.2_rc (HESX1_rc); m=16/17; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.423552; ---yAATTA--- ; cor=; Ncor= a 0 0 0 97.0 4072.0 4072.0 0.0 31.0 4072.0 0 0 0 c 0 0 0 2180.0 0.0 15.0 9.0 53.0 34.0 0 0 0 g 0 0 0 38.0 15.0 0.0 7.0 0.0 0.0 0 0 0 t 0 0 0 1892.0 0.0 0.0 4072.0 4072.0 187.0 0 0 0

MA0890.2_shift3 (GBX2)
; oligos_6nt_test_vs_ctrl_m3 versus MA0890.2 (GBX2); m=17/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.420628; ---yAATTA--- ; cor=; Ncor= a 0 0 0 699.0 27366.0 27366.0 0.0 318.0 27366.0 0 0 0 c 0 0 0 15511.0 570.0 250.0 61.0 570.0 73.0 0 0 0 g 0 0 0 106.0 1113.0 114.0 65.0 673.0 30.0 0 0 0 t 0 0 0 11855.0 227.0 25.0 27366.0 27366.0 650.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift4 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=11; shift=4; ncol=15; ----wwTATTCAAww ; Alignment reference a 0 0 0 0 3011 3222 156 8486 325 665 859 7531 6655 3080 2708 c 0 0 0 0 1346 1211 62 36 294 201 6497 329 495 1408 1628 g 0 0 0 0 1526 1427 76 57 224 322 197 60 385 1305 1259 t 0 0 0 0 2774 2797 8363 78 7814 7469 1104 737 1122 2864 3062

MA0627.3_shift6 (POU2F3)
; oligos_6nt_test_vs_ctrl_m1 versus MA0627.3 (POU2F3); m=1/14; ncol2=9; w=0; offset=2; strand=D; shift=6; score=0.600187; ------tATGCAAAT ; cor=; Ncor= a 0 0 0 0 0 0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 c 0 0 0 0 0 0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 g 0 0 0 0 0 0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 t 0 0 0 0 0 0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0

MA0043.4_shift5 (HLF)
; oligos_6nt_test_vs_ctrl_m1 versus MA0043.4 (HLF); m=2/14; ncol2=9; w=0; offset=1; strand=D; shift=5; score=0.599602; -----TTATGYAAy- ; cor=; Ncor= a 0 0 0 0 0 295.0 162.0 22746.0 197.0 2418.0 369.0 24156.0 24055.0 1399.0 0 c 0 0 0 0 0 242.0 96.0 125.0 1548.0 112.0 17203.0 122.0 67.0 13237.0 0 g 0 0 0 0 0 148.0 895.0 1344.0 253.0 21705.0 199.0 48.0 189.0 3300.0 0 t 0 0 0 0 0 23739.0 23271.0 209.0 22426.0 189.0 6653.0 98.0 113.0 6488.0 0

MA0792.1_shift6 (POU5F1B)
; oligos_6nt_test_vs_ctrl_m1 versus MA0792.1 (POU5F1B); m=3/14; ncol2=9; w=0; offset=2; strand=D; shift=6; score=0.598129; ------TATGywAAT ; cor=; Ncor= a 0 0 0 0 0 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 c 0 0 0 0 0 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 g 0 0 0 0 0 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 t 0 0 0 0 0 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0

MA0025.3_shift5 (NFIL3)
; oligos_6nt_test_vs_ctrl_m1 versus MA0025.3 (NFIL3); m=4/14; ncol2=9; w=0; offset=1; strand=D; shift=5; score=0.597425; -----TTATGyAAt- ; cor=; Ncor= a 0 0 0 0 0 870.0 468.0 21353.0 659.0 1460.0 1358.0 21848.0 21911.0 2193.0 0 c 0 0 0 0 0 681.0 208.0 220.0 1511.0 467.0 12004.0 543.0 251.0 4959.0 0 g 0 0 0 0 0 518.0 1714.0 990.0 492.0 20459.0 454.0 171.0 360.0 2701.0 0 t 0 0 0 0 0 20927.0 20606.0 433.0 20334.0 610.0 9180.0 434.0 474.0 13143.0 0

MA0785.2_shift6 (POU2F1)
; oligos_6nt_test_vs_ctrl_m1 versus MA0785.2 (POU2F1); m=5/14; ncol2=9; w=0; offset=2; strand=D; shift=6; score=0.593732; ------TATGcwAAT ; cor=; Ncor= a 0 0 0 0 0 0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 c 0 0 0 0 0 0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 g 0 0 0 0 0 0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 t 0 0 0 0 0 0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0

MA0784.3_rc_shift4 (POU1F1_rc)
; oligos_6nt_test_vs_ctrl_m1 versus MA0784.3_rc (POU1F1_rc); m=6/14; ncol2=14; w=0; offset=0; strand=R; shift=4; score=0.55575; ----awTATGCwAAT ; cor=; Ncor= a 0 0 0 0 3278.0 1804.0 59.0 4127.0 17.0 3.0 16.0 2563.0 4127.0 4127.0 31.0 c 0 0 0 0 384.0 57.0 5.0 0.0 5.0 1.0 3708.0 0.0 2.0 1.0 28.0 g 0 0 0 0 702.0 165.0 5.0 3.0 9.0 4127.0 67.0 0.0 13.0 0.0 7.0 t 0 0 0 0 849.0 2323.0 4127.0 3.0 4127.0 54.0 419.0 1564.0 91.0 0.0 4127.0

MA0619.2_rc_shift7 (LIN54_rc)
; oligos_6nt_test_vs_ctrl_m1 versus MA0619.2_rc (LIN54_rc); m=7/14; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.547541; -------ATTyAAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 685.0 0.0 0.0 0.0 788.0 999.0 999.0 0 c 0 0 0 0 0 0 0 0.0 0.0 0.0 562.0 0.0 0.0 0.0 0 g 0 0 0 0 0 0 0 211.0 0.0 0.0 0.0 212.0 0.0 0.0 0 t 0 0 0 0 0 0 0 104.0 999.0 999.0 438.0 0.0 0.0 0.0 0

MA0507.3_shift5 (POU2F2)
; oligos_6nt_test_vs_ctrl_m1 versus MA0507.3 (POU2F2); m=8/14; ncol2=13; w=0; offset=1; strand=D; shift=5; score=0.520855; -----wTATGCAAAT ; cor=; Ncor= a 0 0 0 0 0 5892.0 34.0 9207.0 0.0 0.0 2.0 7279.0 9207.0 9207.0 56.0 c 0 0 0 0 0 435.0 100.0 0.0 13.0 0.0 8014.0 0.0 7.0 5.0 8.0 g 0 0 0 0 0 2020.0 4.0 0.0 2.0 9207.0 127.0 0.0 23.0 0.0 35.0 t 0 0 0 0 0 3315.0 9207.0 0.0 9207.0 111.0 1193.0 1929.0 57.0 8.0 9207.0

MA1115.2_shift7 (POU5F1)
; oligos_6nt_test_vs_ctrl_m1 versus MA1115.2 (POU5F1); m=9/14; ncol2=7; w=0; offset=3; strand=D; shift=7; score=0.469156; -------ATGCAAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 0 c 0 0 0 0 0 0 0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 0 g 0 0 0 0 0 0 0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 0 t 0 0 0 0 0 0 0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 0

MA0909.4_rc_shift4 (Hoxd13_rc)
; oligos_6nt_test_vs_ctrl_m1 versus MA0909.4_rc (Hoxd13_rc); m=10/14; ncol2=7; w=0; offset=0; strand=R; shift=4; score=0.447851; ----TTTATTG---- ; cor=; Ncor= a 0 0 0 0 667.0 15.0 11.0 5972.0 30.0 49.0 61.0 0 0 0 0 c 0 0 0 0 379.0 2.0 7.0 3.0 11.0 148.0 34.0 0 0 0 0 g 0 0 0 0 704.0 37.0 4.0 2.0 13.0 5.0 5866.0 0 0 0 0 t 0 0 0 0 4227.0 5923.0 5955.0 0.0 5923.0 5775.0 16.0 0 0 0 0

MA0790.2_rc_shift0 (POU4F1_rc)
; oligos_6nt_test_vs_ctrl_m1 versus MA0790.2_rc (POU4F1_rc); m=11/14; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.445366; ATtAATwATkcA--- ; cor=; Ncor= a 3102.0 15.0 1116.0 3218.0 3201.0 638.0 1316.0 3511.0 139.0 76.0 750.0 3553.0 0 0 0 c 220.0 54.0 696.0 262.0 129.0 144.0 145.0 15.0 25.0 29.0 3857.0 125.0 0 0 0 g 359.0 36.0 668.0 72.0 106.0 124.0 102.0 15.0 47.0 1661.0 376.0 236.0 0 0 0 t 276.0 3181.0 2825.0 390.0 465.0 2915.0 2811.0 91.0 2950.0 1720.0 1032.0 153.0 0 0 0

MA0602.2_rc_shift3 (Arid5a_rc)
; oligos_6nt_test_vs_ctrl_m1 versus MA0602.2_rc (Arid5a_rc); m=12/14; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.44401; ---cAATATTr---- ; cor=; Ncor= a 0 0 0 22.0 83.0 96.0 6.0 93.0 2.0 5.0 48.0 0 0 0 0 c 0 0 0 52.0 4.0 1.0 1.0 1.0 1.0 7.0 3.0 0 0 0 0 g 0 0 0 3.0 9.0 1.0 1.0 0.0 0.0 3.0 32.0 0 0 0 0 t 0 0 0 23.0 4.0 2.0 93.0 6.0 96.0 85.0 16.0 0 0 0 0

MA0791.2_rc_shift0 (POU4F3_rc)
; oligos_6nt_test_vs_ctrl_m1 versus MA0791.2_rc (POU4F3_rc); m=13/14; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.435694; ATtAATwATkcA--- ; cor=; Ncor= a 3774.0 22.0 868.0 3728.0 3805.0 658.0 1579.0 4004.0 132.0 69.0 1067.0 4134.0 0 0 0 c 180.0 25.0 789.0 194.0 166.0 126.0 133.0 25.0 36.0 24.0 4723.0 303.0 0 0 0 g 355.0 19.0 651.0 66.0 101.0 121.0 126.0 21.0 42.0 2014.0 374.0 321.0 0 0 0 t 212.0 3447.0 3100.0 479.0 433.0 3106.0 3041.0 96.0 3264.0 1868.0 1067.0 292.0 0 0 0

MA0151.1_shift7 (Arid3a)
; oligos_6nt_test_vs_ctrl_m1 versus MA0151.1 (Arid3a); m=14/14; ncol2=6; w=0; offset=3; strand=D; shift=7; score=0.415438; -------ATyAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 c 0 0 0 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 t 0 0 0 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift2 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift2 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=2; ncol=17; --aaAAAAAmAAAAAaa ; Alignment reference a 0 0 8028 8188 13312 13832 14137 13872 14043 6486 14133 13586 14092 13827 13220 8209 8190 c 0 0 1918 2290 713 580 506 432 476 6797 474 624 475 609 856 2147 2174 g 0 0 1989 1821 475 568 347 420 366 857 195 708 388 401 497 2110 2070 t 0 0 3422 3058 857 377 367 633 472 1217 555 439 402 520 784 2891 2923

MA1623.2_shift5 (Stat2)
; oligos_7nt_test_vs_ctrl_m2 versus MA1623.2 (Stat2); m=1/5; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.507141; -----gAAACAGAAA-- ; cor=; Ncor= a 0 0 0 0 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 0 c 0 0 0 0 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 0 g 0 0 0 0 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 0 t 0 0 0 0 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0 0

MA1125.2_shift9 (ZNF384)
; oligos_7nt_test_vs_ctrl_m2 versus MA1125.2 (ZNF384); m=2/5; ncol2=8; w=0; offset=7; strand=D; shift=9; score=0.502369; ---------AAAAAAaa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 c 0 0 0 0 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 g 0 0 0 0 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 t 0 0 0 0 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0

MA1487.3_shift0 (FOXE1)
; oligos_7nt_test_vs_ctrl_m2 versus MA1487.3 (FOXE1); m=3/5; ncol2=12; w=-2; offset=-2; strand=D; shift=0; score=0.473728; yTAARyAAACAa----- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0 0 0

MA0847.4_shift0 (FOXD2)
; oligos_7nt_test_vs_ctrl_m2 versus MA0847.4 (FOXD2); m=4/5; ncol2=11; w=-2; offset=-2; strand=D; shift=0; score=0.402256; yTAAryAAACA------ ; cor=; Ncor= a 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 0 0 0 0 0 0 c 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 0 0 0 0 0 0 g 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 0 0 0 0 0 0 t 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0 0 0 0 0 0 0

MA2124.1_rc_shift2 (Hmga1_rc)
; oligos_7nt_test_vs_ctrl_m2 versus MA2124.1_rc (Hmga1_rc); m=5/5; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.401711; --wTAAAAAT------- ; cor=; Ncor= a 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 0 0 0 0 0 c 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 0 0 0 0 0 g 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 0 0 0 0 0 t 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift3 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift3 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=13; shift=3; ncol=16; ---wwATAAATGTGww ; Alignment reference a 0 0 0 1289 1007 3008 196 3096 2600 3104 126 363 205 349 986 1126 c 0 0 0 501 644 88 130 63 177 91 196 87 103 105 514 639 g 0 0 0 670 588 167 233 152 90 105 90 2819 82 2747 585 764 t 0 0 0 949 1170 146 2850 98 542 109 2997 140 3019 208 1324 880

MA1978.2_shift0 (ZNF354A)
; oligos_6nt_test_vs_ctrl_m2 versus MA1978.2 (ZNF354A); m=1/11; ncol2=20; w=-3; offset=-3; strand=D; shift=0; score=0.486706; wAAwtrTAAAtGrayw ; cor=; Ncor= a 277.0 736.0 682.0 385.0 223.0 574.0 115.0 845.0 845.0 791.0 196.0 115.0 304.0 466.0 142.0 277.0 c 115.0 88.0 142.0 142.0 196.0 88.0 115.0 7.0 34.0 88.0 34.0 34.0 115.0 196.0 520.0 142.0 g 61.0 7.0 34.0 196.0 142.0 277.0 34.0 115.0 61.0 61.0 196.0 845.0 466.0 196.0 34.0 142.0 t 547.0 169.0 142.0 277.0 439.0 61.0 736.0 34.0 61.0 61.0 574.0 7.0 115.0 142.0 304.0 439.0

MA2124.1_rc_shift3 (Hmga1_rc)
; oligos_6nt_test_vs_ctrl_m2 versus MA2124.1_rc (Hmga1_rc); m=2/11; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.462217; ---wTAAAAAT----- ; cor=; Ncor= a 0 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 0 0 0 c 0 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 0 0 0 g 0 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 0 0 0 t 0 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0 0 0 0

MA0108.3_shift4 (TBP)
; oligos_6nt_test_vs_ctrl_m2 versus MA0108.3 (TBP); m=3/11; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.457341; ----TATAWAw----- ; cor=; Ncor= a 0 0 0 0 16.0 352.0 3.0 354.0 268.0 360.0 222.0 0 0 0 0 0 c 0 0 0 0 46.0 0.0 10.0 0.0 0.0 3.0 2.0 0 0 0 0 0 g 0 0 0 0 18.0 2.0 2.0 5.0 0.0 20.0 44.0 0 0 0 0 0 t 0 0 0 0 309.0 35.0 374.0 30.0 121.0 6.0 121.0 0 0 0 0 0

MA1473.2_shift2 (CDX4)
; oligos_6nt_test_vs_ctrl_m2 versus MA1473.2 (CDX4); m=4/11; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.443485; --GymATAAAa----- ; cor=; Ncor= a 0 0 2533.0 0.0 12392.0 23367.0 0.0 23367.0 23367.0 23367.0 23367.0 0 0 0 0 0 c 0 0 1064.0 14682.0 10976.0 0.0 0.0 0.0 0.0 57.0 6493.0 0 0 0 0 0 g 0 0 23367.0 0.0 25.0 0.0 0.0 0.0 0.0 0.0 2168.0 0 0 0 0 0 t 0 0 98.0 8686.0 0.0 0.0 23367.0 0.0 0.0 0.0 4827.0 0 0 0 0 0

MA0899.2_shift2 (HOXA10)
; oligos_6nt_test_vs_ctrl_m2 versus MA0899.2 (HOXA10); m=5/11; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.431873; --gymATWAAa----- ; cor=; Ncor= a 0 0 2425.0 153.0 8381.0 8381.0 367.0 5960.0 8381.0 8381.0 8381.0 0 0 0 0 0 c 0 0 1757.0 3867.0 4516.0 455.0 11.0 84.0 36.0 568.0 2082.0 0 0 0 0 0 g 0 0 8381.0 59.0 1022.0 718.0 0.0 121.0 76.0 125.0 1560.0 0 0 0 0 0 t 0 0 1341.0 4515.0 957.0 267.0 8381.0 2422.0 384.0 331.0 2058.0 0 0 0 0 0

MA0650.4_shift2 (Hoxa13)
; oligos_6nt_test_vs_ctrl_m2 versus MA0650.4 (Hoxa13); m=6/11; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.429692; --CCAATAAA------ ; cor=; Ncor= a 0 0 1442.0 1273.0 14069.0 15410.0 105.0 15804.0 16813.0 16550.0 0 0 0 0 0 0 c 0 0 12600.0 14100.0 1594.0 243.0 249.0 205.0 125.0 306.0 0 0 0 0 0 0 g 0 0 1889.0 77.0 146.0 666.0 232.0 407.0 98.0 145.0 0 0 0 0 0 0 t 0 0 1317.0 1798.0 1439.0 929.0 16662.0 832.0 212.0 247.0 0 0 0 0 0 0

MA0465.3_shift2 (CDX2)
; oligos_6nt_test_vs_ctrl_m2 versus MA0465.3 (CDX2); m=7/11; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.426546; --GCAATAAA------ ; cor=; Ncor= a 0 0 3157.0 1226.0 26720.0 29957.0 274.0 29221.0 30645.0 30125.0 0 0 0 0 0 0 c 0 0 2096.0 26587.0 3312.0 414.0 391.0 761.0 349.0 595.0 0 0 0 0 0 0 g 0 0 24214.0 607.0 184.0 1196.0 386.0 999.0 366.0 502.0 0 0 0 0 0 0 t 0 0 2559.0 3606.0 1810.0 459.0 30975.0 1045.0 666.0 804.0 0 0 0 0 0 0

MA0909.4_shift3 (Hoxd13)
; oligos_6nt_test_vs_ctrl_m2 versus MA0909.4 (Hoxd13); m=8/11; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.424401; ---CAATAAA------ ; cor=; Ncor= a 0 0 0 16.0 5775.0 5923.0 0.0 5955.0 5923.0 4227.0 0 0 0 0 0 0 c 0 0 0 5866.0 5.0 13.0 2.0 4.0 37.0 704.0 0 0 0 0 0 0 g 0 0 0 34.0 148.0 11.0 3.0 7.0 2.0 379.0 0 0 0 0 0 0 t 0 0 0 61.0 49.0 30.0 5972.0 11.0 15.0 667.0 0 0 0 0 0 0

MA0913.3_shift2 (HOXD9)
; oligos_6nt_test_vs_ctrl_m2 versus MA0913.3 (HOXD9); m=9/11; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.420214; --GymATAAAA----- ; cor=; Ncor= a 0 0 1300.0 0.0 16363.0 16363.0 215.0 16363.0 16363.0 16363.0 16363.0 0 0 0 0 0 c 0 0 872.0 9773.0 8643.0 226.0 0.0 8.0 0.0 0.0 2202.0 0 0 0 0 0 g 0 0 16363.0 42.0 675.0 439.0 0.0 0.0 0.0 0.0 1216.0 0 0 0 0 0 t 0 0 655.0 6590.0 927.0 4.0 16363.0 5445.0 123.0 0.0 2194.0 0 0 0 0 0

MA0878.3_shift1 (CDX1)
; oligos_6nt_test_vs_ctrl_m2 versus MA0878.3 (CDX1); m=10/11; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.406964; -GGymATAAAA----- ; cor=; Ncor= a 0 1088.0 527.0 11.0 4822.0 8617.0 0.0 8617.0 8617.0 8617.0 7199.0 0 0 0 0 0 c 0 884.0 355.0 4868.0 3795.0 0.0 0.0 56.0 72.0 0.0 1418.0 0 0 0 0 0 g 0 7528.0 8090.0 0.0 0.0 344.0 0.0 0.0 97.0 0.0 754.0 0 0 0 0 0 t 0 1076.0 131.0 3749.0 355.0 0.0 8617.0 230.0 29.0 0.0 854.0 0 0 0 0 0

MA0635.2_shift6 (BARHL2)
; oligos_6nt_test_vs_ctrl_m2 versus MA0635.2 (BARHL2); m=11/11; ncol2=6; w=0; offset=3; strand=D; shift=6; score=0.401413; ------TAAAyG---- ; cor=; Ncor= a 0 0 0 0 0 0 643.0 12855.0 12855.0 12855.0 443.0 1570.0 0 0 0 0 c 0 0 0 0 0 0 0.0 0.0 0.0 116.0 12855.0 0.0 0 0 0 0 g 0 0 0 0 0 0 0.0 0.0 0.0 1086.0 127.0 12855.0 0 0 0 0 t 0 0 0 0 0 0 12855.0 1969.0 0.0 4032.0 7756.0 1335.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=20; shift=0; ncol=20; wwAAAAAgAAAtGAAATgww ; Alignment reference a 580 560 1051 1053 1120 1101 1083 245 1136 1134 1142 297 251 1135 1110 1139 251 241 573 524 c 165 173 57 74 48 55 32 73 37 60 62 42 48 44 66 46 62 90 208 221 g 240 216 91 94 52 70 69 848 69 50 58 124 907 43 62 66 82 823 189 229 t 337 373 123 101 102 96 138 156 80 78 60 859 116 100 84 71 927 168 352 348

MA1623.2_shift1 (Stat2)
; oligos_7nt_test_vs_ctrl_m5 versus MA1623.2 (Stat2); m=1/1; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.42106; -gAAACAGAAA--------- ; cor=; Ncor= a 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 0 0 0 0 0 0 0 0 c 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 0 0 0 0 0 0 0 0 g 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 0 0 0 0 0 0 0 0 t 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift3 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=11; shift=3; ncol=14; ---wwATGGTAAww ; Alignment reference a 0 0 0 3198 2713 7883 437 718 735 514 8171 7702 2874 2826 c 0 0 0 1346 1764 315 94 82 295 181 141 376 1820 1672 g 0 0 0 1798 1491 497 295 7861 7544 177 265 442 1540 1530 t 0 0 0 2821 3195 468 8337 502 589 8291 586 643 2929 3135
MA0786.2_shift3 (POU3F1)				; oligos_6nt_test_vs_ctrl_m5 versus MA0786.2 (POU3F1); m=1/28; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.679943; ---wTATGywAAT- ; cor=; Ncor= a 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 0 c 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 0 g 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 0 t 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 0
MA0787.1_shift3 (POU3F2)				; oligos_6nt_test_vs_ctrl_m5 versus MA0787.1 (POU3F2); m=2/28; ncol2=12; w=0; offset=0; strand=D; shift=3; score=0.674102; ---wTATGCwAATk ; cor=; Ncor= a 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 c 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 g 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 t 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0
MA0788.1_shift2 (POU3F3)				; oligos_6nt_test_vs_ctrl_m5 versus MA0788.1 (POU3F3); m=3/28; ncol2=13; w=-1; offset=-1; strand=D; shift=2; score=0.621615; --wwTATGCwAATt ; cor=; Ncor= a 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 c 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 g 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 t 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0
MA0792.1_shift4 (POU5F1B)				; oligos_6nt_test_vs_ctrl_m5 versus MA0792.1 (POU5F1B); m=4/28; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.591051; ----TATGywAAT- ; cor=; Ncor= a 0 0 0 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 0 c 0 0 0 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 0 g 0 0 0 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 0 t 0 0 0 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0 0
MA0785.2_shift4 (POU2F1)				; oligos_6nt_test_vs_ctrl_m5 versus MA0785.2 (POU2F1); m=5/28; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.585891; ----TATGcwAAT- ; cor=; Ncor= a 0 0 0 0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 0 c 0 0 0 0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 0 g 0 0 0 0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 0 t 0 0 0 0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 0
MA1525.3_shift5 (NFATC4)				; oligos_6nt_test_vs_ctrl_m5 versus MA1525.3 (NFATC4); m=6/28; ncol2=9; w=0; offset=2; strand=D; shift=5; score=0.584887; -----ayGGAAAmw ; cor=; Ncor= a 0 0 0 0 0 7139.0 16.0 0.0 0.0 7139.0 7139.0 7139.0 7139.0 2709.0 c 0 0 0 0 0 715.0 2586.0 0.0 0.0 0.0 0.0 460.0 6522.0 1280.0 g 0 0 0 0 0 2590.0 43.0 7139.0 7139.0 0.0 0.0 42.0 1149.0 138.0 t 0 0 0 0 0 1505.0 4553.0 0.0 0.0 0.0 0.0 107.0 1164.0 3012.0
MA0789.1_shift4 (POU3F4)				; oligos_6nt_test_vs_ctrl_m5 versus MA0789.1 (POU3F4); m=7/28; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.583534; ----TATGCwAAT- ; cor=; Ncor= a 0 0 0 0 941.0 11117.0 59.0 53.0 136.0 6447.0 11117.0 11117.0 705.0 0 c 0 0 0 0 349.0 23.0 59.0 19.0 11117.0 10.0 332.0 47.0 247.0 0 g 0 0 0 0 136.0 68.0 24.0 11117.0 602.0 56.0 315.0 88.0 292.0 0 t 0 0 0 0 11117.0 26.0 11117.0 245.0 2565.0 4670.0 885.0 168.0 11117.0 0
MA0152.3_shift4 (Nfatc2)				; oligos_6nt_test_vs_ctrl_m5 versus MA0152.3 (Nfatc2); m=8/28; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.560801; ----aATGGAAA-- ; cor=; Ncor= a 0 0 0 0 2166.0 2583.0 170.0 78.0 33.0 3095.0 3140.0 2944.0 0 0 c 0 0 0 0 460.0 206.0 124.0 17.0 27.0 38.0 19.0 104.0 0 0 g 0 0 0 0 292.0 329.0 101.0 3118.0 3133.0 65.0 45.0 79.0 0 0 t 0 0 0 0 321.0 121.0 2844.0 26.0 46.0 41.0 35.0 112.0 0 0
MA0606.3_shift5 (Nfat5)				; oligos_6nt_test_vs_ctrl_m5 versus MA0606.3 (Nfat5); m=9/28; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.54675; -----ATGGAAAA- ; cor=; Ncor= a 0 0 0 0 0 279.0 35.0 13.0 16.0 328.0 336.0 334.0 315.0 0 c 0 0 0 0 0 17.0 10.0 0.0 8.0 8.0 1.0 4.0 8.0 0 g 0 0 0 0 0 47.0 9.0 332.0 325.0 15.0 10.0 8.0 19.0 0 t 0 0 0 0 0 13.0 302.0 11.0 7.0 5.0 9.0 10.0 14.0 0
MA0461.3_rc_shift2 (Atoh1_rc)				; oligos_6nt_test_vs_ctrl_m5 versus MA0461.3_rc (Atoh1_rc); m=10/28; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.422637; --CATATGky---- ; cor=; Ncor= a 0 0 31.0 1027.0 0.0 1027.0 0.0 0.0 21.0 59.0 0 0 0 0 c 0 0 1027.0 5.0 0.0 136.0 34.0 8.0 149.0 372.0 0 0 0 0 g 0 0 1.0 4.0 74.0 10.0 20.0 1027.0 334.0 108.0 0 0 0 0 t 0 0 2.0 22.0 1027.0 17.0 1027.0 42.0 523.0 655.0 0 0 0 0
MA1116.2_shift6 (RBPJ)				; oligos_6nt_test_vs_ctrl_m5 versus MA1116.2 (RBPJ); m=11/28; ncol2=6; w=0; offset=3; strand=D; shift=6; score=0.420455; ------TGGGAA-- ; cor=; Ncor= a 0 0 0 0 0 0 2.0 35.0 9.0 7.0 2369.0 2382.0 0 0 c 0 0 0 0 0 0 12.0 25.0 20.0 8.0 0.0 15.0 0 0 g 0 0 0 0 0 0 2.0 2341.0 2313.0 2309.0 4.0 1.0 0 0 t 0 0 0 0 0 0 2386.0 1.0 60.0 78.0 29.0 4.0 0 0
MA1524.3_shift0 (Msgn1)				; oligos_6nt_test_vs_ctrl_m5 versus MA1524.3 (Msgn1); m=12/28; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score= 0.4188; raCAAATGGy---- ; cor=; Ncor= a 193.0 363.0 0.0 537.0 460.0 537.0 18.0 1.0 5.0 37.0 0 0 0 0 c 21.0 128.0 539.0 3.0 8.0 4.0 6.0 2.0 8.0 140.0 0 0 0 0 g 324.0 46.0 2.0 0.0 52.0 0.0 3.0 531.0 512.0 50.0 0 0 0 0 t 4.0 5.0 1.0 2.0 22.0 1.0 515.0 8.0 17.0 315.0 0 0 0 0
MA0047.4_shift7 (FOXA2)				; oligos_6nt_test_vs_ctrl_m5 versus MA0047.4 (FOXA2); m=13/28; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.418516; -------wGTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 c 0 0 0 0 0 0 0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 g 0 0 0 0 0 0 0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 t 0 0 0 0 0 0 0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0
MA0624.3_shift6 (Nfatc1)				; oligos_6nt_test_vs_ctrl_m5 versus MA0624.3 (Nfatc1); m=14/28; ncol2=6; w=0; offset=3; strand=D; shift=6; score=0.418344; ------TGGAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 128.0 55.0 62.0 6080.0 6107.0 5947.0 0 0 c 0 0 0 0 0 0 227.0 13.0 16.0 30.0 13.0 77.0 0 0 g 0 0 0 0 0 0 65.0 6106.0 6058.0 27.0 32.0 43.0 0 0 t 0 0 0 0 0 0 5771.0 17.0 55.0 54.0 39.0 124.0 0 0
MA1568.2_rc_shift0 (TCF21_rc)				; oligos_6nt_test_vs_ctrl_m5 versus MA1568.2_rc (TCF21_rc); m=15/28; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.415987; rmCATATGGt---- ; cor=; Ncor= a 431.0 339.0 18.0 872.0 0.0 872.0 14.0 2.0 28.0 194.0 0 0 0 0 c 6.0 533.0 872.0 0.0 71.0 67.0 164.0 12.0 205.0 352.0 0 0 0 0 g 441.0 86.0 0.0 107.0 43.0 54.0 0.0 872.0 872.0 20.0 0 0 0 0 t 87.0 19.0 4.0 21.0 872.0 0.0 872.0 4.0 89.0 872.0 0 0 0 0
MA0678.1_rc_shift0 (OLIG2_rc)				; oligos_6nt_test_vs_ctrl_m5 versus MA0678.1_rc (OLIG2_rc); m=16/28; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.413127; rmCATATGkT---- ; cor=; Ncor= a 1609.0 744.0 117.0 1609.0 4.0 1609.0 22.0 0.0 16.0 108.0 0 0 0 0 c 57.0 866.0 1609.0 0.0 18.0 0.0 53.0 4.0 142.0 283.0 0 0 0 0 g 689.0 396.0 3.0 159.0 22.0 0.0 2.0 1609.0 929.0 90.0 0 0 0 0 t 146.0 4.0 10.0 21.0 1609.0 0.0 1609.0 74.0 680.0 1609.0 0 0 0 0
MA0031.2_shift8 (FOXD1)				; oligos_6nt_test_vs_ctrl_m5 versus MA0031.2 (FOXD1); m=17/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.411865; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 c 0 0 0 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 g 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 t 0 0 0 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0
MA0095.4_shift1 (Yy1)				; oligos_6nt_test_vs_ctrl_m5 versus MA0095.4 (Yy1); m=18/28; ncol2=8; w=-2; offset=-2; strand=D; shift=1; score=0.411112; -CAAAATGG----- ; cor=; Ncor= a 0 3123.0 41529.0 39666.0 30769.0 41506.0 689.0 561.0 1597.0 0 0 0 0 0 c 0 33122.0 926.0 1447.0 2536.0 746.0 241.0 165.0 971.0 0 0 0 0 0 g 0 3684.0 287.0 1320.0 8658.0 712.0 708.0 42263.0 39612.0 0 0 0 0 0 t 0 3419.0 606.0 915.0 1385.0 384.0 41710.0 359.0 1168.0 0 0 0 0 0
MA0042.2_shift8 (FOXI1)				; oligos_6nt_test_vs_ctrl_m5 versus MA0042.2 (FOXI1); m=19/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.410268; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 c 0 0 0 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 g 0 0 0 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 t 0 0 0 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0
MA1608.2_rc_shift2 (Isl1_rc)				; oligos_6nt_test_vs_ctrl_m5 versus MA1608.2_rc (Isl1_rc); m=20/28; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score=0.410076; --cTAATGG----- ; cor=; Ncor= a 0 0 436.0 110.0 5430.0 5482.0 32.0 266.0 379.0 0 0 0 0 0 c 0 0 3702.0 20.0 39.0 34.0 99.0 54.0 192.0 0 0 0 0 0 g 0 0 410.0 45.0 104.0 54.0 30.0 4885.0 4710.0 0 0 0 0 0 t 0 0 1089.0 5462.0 64.0 67.0 5476.0 432.0 356.0 0 0 0 0 0
MA1683.2_shift8 (FOXA3)				; oligos_6nt_test_vs_ctrl_m5 versus MA1683.2 (FOXA3); m=21/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.410028; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 c 0 0 0 0 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 g 0 0 0 0 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 t 0 0 0 0 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0
MA0607.2_rc_shift0 (BHLHA15_rc)				; oligos_6nt_test_vs_ctrl_m5 versus MA0607.2_rc (BHLHA15_rc); m=22/28; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.409526; aCCATATGGt---- ; cor=; Ncor= a 8119.0 2784.0 38.0 11369.0 0.0 11369.0 44.0 0.0 33.0 1748.0 0 0 0 0 c 772.0 8585.0 11369.0 6.0 56.0 392.0 215.0 0.0 774.0 3272.0 0 0 0 0 g 3251.0 778.0 0.0 223.0 373.0 59.0 14.0 11369.0 8626.0 757.0 0 0 0 0 t 1749.0 37.0 0.0 50.0 11369.0 0.0 11369.0 41.0 2744.0 8097.0 0 0 0 0
MA0827.1_rc_shift0 (OLIG3_rc)				; oligos_6nt_test_vs_ctrl_m5 versus MA0827.1_rc (OLIG3_rc); m=23/28; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.409512; rvCATATGkT---- ; cor=; Ncor= a 1915.0 1010.0 275.0 1915.0 0.0 1915.0 22.0 3.0 6.0 132.0 0 0 0 0 c 176.0 904.0 1915.0 2.0 11.0 72.0 99.0 0.0 208.0 427.0 0 0 0 0 g 964.0 662.0 4.0 224.0 103.0 26.0 10.0 1915.0 1115.0 204.0 0 0 0 0 t 265.0 28.0 4.0 56.0 1915.0 0.0 1915.0 222.0 800.0 1915.0 0 0 0 0
MA0481.4_shift8 (FOXP1)				; oligos_6nt_test_vs_ctrl_m5 versus MA0481.4 (FOXP1); m=24/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.408629; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 c 0 0 0 0 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 g 0 0 0 0 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 t 0 0 0 0 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0
MA0818.2_rc_shift0 (BHLHE22_rc)				; oligos_6nt_test_vs_ctrl_m5 versus MA0818.2_rc (BHLHE22_rc); m=25/28; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.408003; rmCATATGkT---- ; cor=; Ncor= a 5142.0 3086.0 0.0 8662.0 0.0 8662.0 80.0 0.0 56.0 765.0 0 0 0 0 c 280.0 4007.0 8662.0 0.0 44.0 75.0 850.0 0.0 1530.0 557.0 0 0 0 0 g 3520.0 1481.0 0.0 808.0 44.0 59.0 0.0 8662.0 3954.0 491.0 0 0 0 0 t 448.0 89.0 0.0 90.0 8662.0 0.0 8662.0 0.0 3121.0 8662.0 0 0 0 0
MA1467.3_shift2 (Atoh1)				; oligos_6nt_test_vs_ctrl_m5 versus MA1467.3 (Atoh1); m=26/28; ncol2=7; w=-1; offset=-1; strand=D; shift=2; score=0.40209; --CAGATGG----- ; cor=; Ncor= a 0 0 273.0 20977.0 165.0 21079.0 117.0 280.0 1158.0 0 0 0 0 0 c 0 0 20657.0 170.0 425.0 115.0 552.0 159.0 2163.0 0 0 0 0 0 g 0 0 208.0 257.0 18911.0 189.0 99.0 20837.0 15743.0 0 0 0 0 0 t 0 0 339.0 73.0 1976.0 94.0 20709.0 201.0 2413.0 0 0 0 0 0
MA1103.3_shift8 (FOXK2)				; oligos_6nt_test_vs_ctrl_m5 versus MA1103.3 (FOXK2); m=27/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.401659; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 c 0 0 0 0 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 g 0 0 0 0 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 t 0 0 0 0 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0
MA2117.1_shift8 (FOXP4)				; oligos_6nt_test_vs_ctrl_m5 versus MA2117.1 (FOXP4); m=28/28; ncol2=7; w=0; offset=5; strand=D; shift=8; score=0.400927; --------GTAAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 c 0 0 0 0 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 g 0 0 0 0 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 t 0 0 0 0 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=15; shift=0; ncol=15; wwTATGAGTCATAww ; Alignment reference a 1467 1461 665 3476 158 133 4534 306 158 332 4647 330 3385 1457 1433 c 904 1061 410 539 63 150 36 500 81 4306 63 472 416 970 1005 g 1121 988 475 483 98 4331 72 3782 84 123 41 509 390 1023 1000 t 1402 1384 3344 396 4575 280 252 306 4571 133 143 3583 703 1444 1456
MA1101.3_rc_shift2 (BACH2_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1101.3_rc (BACH2_rc); m=1/30; ncol2=11; w=0; offset=2; strand=R; shift=2; score=0.623434; --sATGAsTCATG-- ; cor=; Ncor= a 0 0 5274.0 63746.0 0.0 3.0 67975.0 18.0 6.0 54.0 68266.0 0.0 8116.0 0 0 c 0 0 30498.0 2028.0 11.0 0.0 856.0 30785.0 13.0 68240.0 1.0 15304.0 6727.0 0 0 g 0 0 35220.0 11634.0 2.0 68215.0 20.0 37438.0 1088.0 0.0 7.0 260.0 61580.0 0 0 t 0 0 4522.0 47.0 68264.0 115.0 3.0 50.0 67846.0 6.0 1.0 62993.0 9369.0 0 0
MA0841.2_rc_shift2 (NFE2_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0841.2_rc (NFE2_rc); m=2/30; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.620348; --sATGAGTCAT--- ; cor=; Ncor= a 0 0 3417.0 18831.0 5.0 3.0 18831.0 17.0 4.0 2.0 18831.0 5.0 0 0 0 c 0 0 5067.0 10.0 8.0 0.0 3.0 4472.0 0.0 18831.0 0.0 1306.0 0 0 0 g 0 0 9860.0 2689.0 13.0 18831.0 20.0 14360.0 11.0 0.0 8.0 9.0 0 0 0 t 0 0 487.0 0.0 18831.0 1.0 0.0 37.0 18831.0 0.0 2.0 18831.0 0 0 0
MA0490.3_rc_shift3 (JUNB_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0490.3_rc (JUNB_rc); m=3/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.599189; ---ATGAGTCAT--- ; cor=; Ncor= a 0 0 0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 0 0 0 c 0 0 0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 0 0 0 g 0 0 0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 0 0 0 t 0 0 0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0 0 0 0
MA0491.3_rc_shift3 (JUND_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0491.3_rc (JUND_rc); m=4/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.597216; ---ATGAGTCAt--- ; cor=; Ncor= a 0 0 0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 0 0 0 c 0 0 0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 0 0 0 g 0 0 0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 0 0 0 t 0 0 0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 0 0 0
MA0477.3_rc_shift3 (FOSL1_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0477.3_rc (FOSL1_rc); m=5/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.596112; ---aTGAGTCAt--- ; cor=; Ncor= a 0 0 0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 0 0 0 c 0 0 0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 0 0 0 g 0 0 0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 0 0 0 t 0 0 0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 0 0 0
MA1633.2_rc_shift3 (BACH1_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1633.2_rc (BACH1_rc); m=6/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.595221; ---aTGAGTCAT--- ; cor=; Ncor= a 0 0 0 32322.0 17.0 18.0 32322.0 517.0 14.0 811.0 32322.0 1048.0 0 0 0 c 0 0 0 2962.0 50.0 52.0 3303.0 0.0 24.0 32322.0 25.0 6187.0 0 0 0 g 0 0 0 8737.0 39.0 32322.0 31.0 32322.0 38.0 13.0 25.0 1482.0 0 0 0 t 0 0 0 4970.0 32322.0 2834.0 534.0 551.0 32322.0 0.0 7.0 32322.0 0 0 0
MA0655.1_rc_shift3 (JDP2_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0655.1_rc (JDP2_rc); m=7/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.594674; ---ATGASTCAT--- ; cor=; Ncor= a 0 0 0 1634.0 7.0 9.0 1634.0 13.0 25.0 22.0 1634.0 8.0 0 0 0 c 0 0 0 5.0 0.0 3.0 6.0 434.0 2.0 1634.0 1.0 140.0 0 0 0 g 0 0 0 404.0 0.0 1634.0 0.0 1200.0 1.0 3.0 6.0 19.0 0 0 0 t 0 0 0 22.0 1634.0 22.0 6.0 14.0 1634.0 0.0 5.0 1634.0 0 0 0
MA0478.2_rc_shift3 (FOSL2_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0478.2_rc (FOSL2_rc); m=8/30; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.594057; ---vTGAsTCAyy-- ; cor=; Ncor= a 0 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 494.0 0 0 c 0 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 2707.0 0 0 g 0 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 592.0 0 0 t 0 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0 1525.0 0 0
MA1141.2_shift3 (FOS::JUND)				; oligos_7nt_test_vs_ctrl_m3 versus MA1141.2 (FOS::JUND); m=9/30; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.590608; ---rTGAGTCAy--- ; cor=; Ncor= a 0 0 0 593.0 0.0 0.0 894.0 75.0 0.0 29.0 999.0 21.0 0 0 0 c 0 0 0 104.0 1.0 0.0 91.0 40.0 0.0 970.0 0.0 290.0 0 0 0 g 0 0 0 266.0 0.0 871.0 0.0 867.0 0.0 0.0 0.0 77.0 0 0 0 t 0 0 0 38.0 999.0 129.0 15.0 19.0 999.0 0.0 0.0 612.0 0 0 0
MA1128.2_rc_shift3 (FOSL1::JUN_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1128.2_rc (FOSL1::JUN_rc); m=10/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.589322; ---aTGAGTCAy--- ; cor=; Ncor= a 0 0 0 579.0 4.0 4.0 826.0 97.0 3.0 38.0 996.0 26.0 0 0 0 c 0 0 0 119.0 9.0 2.0 140.0 51.0 2.0 957.0 1.0 283.0 0 0 0 g 0 0 0 245.0 4.0 835.0 2.0 826.0 2.0 2.0 2.0 89.0 0 0 0 t 0 0 0 57.0 984.0 159.0 33.0 26.0 994.0 3.0 1.0 602.0 0 0 0
MA1134.2_shift3 (FOS::JUNB)				; oligos_7nt_test_vs_ctrl_m3 versus MA1134.2 (FOS::JUNB); m=11/30; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.587623; ---rTGAsTCAy--- ; cor=; Ncor= a 0 0 0 593.0 1.0 1.0 965.0 48.0 1.0 27.0 998.0 7.0 0 0 0 c 0 0 0 105.0 1.0 1.0 30.0 309.0 1.0 971.0 1.0 284.0 0 0 0 g 0 0 0 267.0 1.0 868.0 1.0 618.0 3.0 1.0 1.0 51.0 0 0 0 t 0 0 0 36.0 998.0 131.0 4.0 25.0 996.0 1.0 1.0 658.0 0 0 0
MA0099.4_shift3 (FOS::JUN)				; oligos_7nt_test_vs_ctrl_m3 versus MA0099.4 (FOS::JUN); m=12/30; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.586998; ---rTGAGTCAy--- ; cor=; Ncor= a 0 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 0 0 0 c 0 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 0 0 0 g 0 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 0 0 0 t 0 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 0 0 0
MA1130.2_shift3 (FOSL2::JUN)				; oligos_7nt_test_vs_ctrl_m3 versus MA1130.2 (FOSL2::JUN); m=13/30; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.586951; ---rTGAGTCAy--- ; cor=; Ncor= a 0 0 0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 0 0 0 c 0 0 0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 0 0 0 g 0 0 0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 0 0 0 t 0 0 0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 0 0 0
MA1144.2_rc_shift3 (FOSL2::JUND_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1144.2_rc (FOSL2::JUND_rc); m=14/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.586576; ---rTGAsTCAy--- ; cor=; Ncor= a 0 0 0 583.0 0.0 0.0 934.0 58.0 0.0 10.0 999.0 14.0 0 0 0 c 0 0 0 113.0 0.0 0.0 60.0 292.0 0.0 990.0 0.0 291.0 0 0 0 g 0 0 0 266.0 0.0 860.0 0.0 604.0 1.0 0.0 0.0 60.0 0 0 0 t 0 0 0 38.0 999.0 140.0 6.0 46.0 998.0 0.0 0.0 634.0 0 0 0
MA1137.2_rc_shift3 (FOSL1::JUNB_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1137.2_rc (FOSL1::JUNB_rc); m=15/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.585244; ---aTKAgTCAy--- ; cor=; Ncor= a 0 0 0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 0 0 0 c 0 0 0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 0 0 0 g 0 0 0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 0 0 0 t 0 0 0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 0 0 0
MA1138.2_rc_shift3 (FOSL2::JUNB_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1138.2_rc (FOSL2::JUNB_rc); m=16/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.585003; ---rTGAsTCAy--- ; cor=; Ncor= a 0 0 0 602.0 0.0 0.0 973.0 85.0 0.0 14.0 999.0 13.0 0 0 0 c 0 0 0 112.0 0.0 0.0 26.0 292.0 0.0 985.0 0.0 314.0 0 0 0 g 0 0 0 251.0 0.0 831.0 0.0 568.0 0.0 0.0 0.0 53.0 0 0 0 t 0 0 0 35.0 999.0 168.0 1.0 54.0 999.0 0.0 0.0 621.0 0 0 0
MA1135.2_rc_shift3 (FOSB::JUNB_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1135.2_rc (FOSB::JUNB_rc); m=17/30; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.583645; ---rTGAsTCAy--- ; cor=; Ncor= a 0 0 0 578.0 1.0 1.0 958.0 61.0 1.0 19.0 998.0 20.0 0 0 0 c 0 0 0 126.0 1.0 1.0 39.0 309.0 1.0 980.0 1.0 321.0 0 0 0 g 0 0 0 259.0 0.0 808.0 1.0 596.0 1.0 0.0 0.0 61.0 0 0 0 t 0 0 0 37.0 998.0 191.0 2.0 34.0 997.0 1.0 1.0 598.0 0 0 0
MA0089.3_rc_shift1 (MAFG::NFE2L1_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0089.3_rc (MAFG::NFE2L1_rc); m=18/30; ncol2=11; w=0; offset=1; strand=R; shift=1; score=0.562436; -TGCTGAGTCAT--- ; cor=; Ncor= a 0 293.0 26.0 263.0 98.0 97.0 3091.0 83.0 6.0 24.0 3337.0 11.0 0 0 0 c 0 142.0 33.0 3018.0 78.0 25.0 35.0 358.0 10.0 3308.0 2.0 706.0 0 0 0 g 0 64.0 3281.0 18.0 9.0 3049.0 12.0 2864.0 4.0 7.0 5.0 57.0 0 0 0 t 0 2857.0 16.0 57.0 3171.0 185.0 218.0 51.0 3336.0 17.0 12.0 2582.0 0 0 0
MA0501.2_rc_shift1 (MAF::NFE2_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0501.2_rc (MAF::NFE2_rc); m=19/30; ncol2=11; w=0; offset=1; strand=R; shift=1; score=0.543275; -TGCTGAGTCAy--- ; cor=; Ncor= a 0 69.0 5.0 37.0 61.0 51.0 967.0 37.0 0.0 8.0 1090.0 4.0 0 0 0 c 0 73.0 22.0 1041.0 51.0 22.0 12.0 166.0 0.0 1082.0 0.0 334.0 0 0 0 g 0 17.0 1063.0 4.0 0.0 937.0 1.0 871.0 0.0 0.0 0.0 26.0 0 0 0 t 0 931.0 0.0 8.0 978.0 80.0 110.0 16.0 1090.0 0.0 0.0 726.0 0 0 0
MA0489.3_rc_shift3 (Jun_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0489.3_rc (Jun_rc); m=20/30; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.532068; ---aTGAGTCA---- ; cor=; Ncor= a 0 0 0 61451.0 1633.0 969.0 89140.0 4185.0 1648.0 2739.0 91503.0 0 0 0 0 c 0 0 0 13040.0 1147.0 1228.0 1009.0 14953.0 1717.0 88928.0 718.0 0 0 0 0 g 0 0 0 14637.0 1827.0 88215.0 920.0 71105.0 1493.0 1468.0 716.0 0 0 0 0 t 0 0 0 4975.0 89496.0 3691.0 3034.0 3860.0 89245.0 968.0 1166.0 0 0 0 0
MA0150.3_rc_shift1 (Nfe2l2_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0150.3_rc (Nfe2l2_rc); m=21/30; ncol2=11; w=0; offset=1; strand=R; shift=1; score=0.526553; -TGCTGAGTCAy--- ; cor=; Ncor= a 0 46.0 4.0 7.0 56.0 66.0 606.0 55.0 0.0 15.0 726.0 5.0 0 0 0 c 0 31.0 19.0 698.0 90.0 46.0 16.0 118.0 0.0 711.0 0.0 205.0 0 0 0 g 0 26.0 699.0 11.0 3.0 549.0 20.0 533.0 0.0 0.0 0.0 28.0 0 0 0 t 0 623.0 4.0 10.0 577.0 65.0 84.0 20.0 726.0 0.0 0.0 488.0 0 0 0
MA0476.2_rc_shift3 (FOS_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0476.2_rc (FOS_rc); m=22/30; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.520871; ---ATGAsTCA---- ; cor=; Ncor= a 0 0 0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 0 0 0 0 c 0 0 0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 0 0 0 0 g 0 0 0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 0 0 0 0
MA1142.2_rc_shift4 (FOSL1::JUND_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1142.2_rc (FOSL1::JUND_rc); m=23/30; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.516278; ----TkagTCAy--- ; cor=; Ncor= a 0 0 0 0 31.0 64.0 669.0 180.0 41.0 140.0 913.0 40.0 0 0 0 c 0 0 0 0 17.0 25.0 187.0 191.0 82.0 777.0 34.0 282.0 0 0 0 g 0 0 0 0 40.0 641.0 45.0 581.0 12.0 61.0 23.0 127.0 0 0 0 t 0 0 0 0 912.0 270.0 98.0 49.0 864.0 22.0 30.0 551.0 0 0 0
MA1132.2_rc_shift4 (JUN::JUNB_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1132.2_rc (JUN::JUNB_rc); m=24/30; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.512489; ----TGmGTCAt--- ; cor=; Ncor= a 0 0 0 0 27.0 122.0 565.0 33.0 18.0 47.0 946.0 50.0 0 0 0 c 0 0 0 0 18.0 10.0 353.0 115.0 28.0 921.0 34.0 189.0 0 0 0 g 0 0 0 0 24.0 707.0 24.0 826.0 10.0 21.0 10.0 134.0 0 0 0 t 0 0 0 0 931.0 161.0 58.0 27.0 944.0 10.0 11.0 627.0 0 0 0
MA0496.4_rc_shift2 (MAFK_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0496.4_rc (MAFK_rc); m=25/30; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.509207; --GCTGAGTCAk--- ; cor=; Ncor= a 0 0 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 0 0 0 c 0 0 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 0 0 0 g 0 0 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 0 0 0 t 0 0 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0 0 0 0
MA1928.2_shift4 (BNC2)				; oligos_7nt_test_vs_ctrl_m3 versus MA1928.2 (BNC2); m=26/30; ncol2=7; w=0; offset=4; strand=D; shift=4; score=0.466323; ----TGAGTCA---- ; cor=; Ncor= a 0 0 0 0 147.0 134.0 5303.0 227.0 86.0 216.0 5483.0 0 0 0 0 c 0 0 0 0 66.0 72.0 117.0 838.0 106.0 5238.0 54.0 0 0 0 0 g 0 0 0 0 96.0 5184.0 61.0 4332.0 80.0 112.0 56.0 0 0 0 0 t 0 0 0 0 5363.0 282.0 191.0 275.0 5400.0 106.0 79.0 0 0 0 0
MA1634.2_rc_shift4 (BATF_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1634.2_rc (BATF_rc); m=27/30; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.466096; ----TGAGTCA---- ; cor=; Ncor= a 0 0 0 0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 0 0 0 0 c 0 0 0 0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 0 0 0 0 g 0 0 0 0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 0 0 0 0 t 0 0 0 0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 0 0 0 0
MA1988.2_rc_shift4 (Atf3_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA1988.2_rc (Atf3_rc); m=28/30; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.466051; ----TGAGTCA---- ; cor=; Ncor= a 0 0 0 0 887.0 2087.0 50485.0 2262.0 547.0 3914.0 53085.0 0 0 0 0 c 0 0 0 0 1086.0 574.0 1365.0 4498.0 471.0 48774.0 357.0 0 0 0 0 g 0 0 0 0 673.0 46610.0 504.0 45670.0 356.0 443.0 669.0 0 0 0 0 t 0 0 0 0 52046.0 5421.0 2338.0 2262.0 53318.0 1561.0 581.0 0 0 0 0
MA0462.3_rc_shift4 (BATF::JUN_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0462.3_rc (BATF::JUN_rc); m=29/30; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.466035; ----TGAGTCA---- ; cor=; Ncor= a 0 0 0 0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 0 0 0 0 c 0 0 0 0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 0 0 0 0 g 0 0 0 0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 0 0 0 0 t 0 0 0 0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 0 0 0 0
MA0835.3_rc_shift4 (BATF3_rc)				; oligos_7nt_test_vs_ctrl_m3 versus MA0835.3_rc (BATF3_rc); m=30/30; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.465521; ----TGAGTCA---- ; cor=; Ncor= a 0 0 0 0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 0 0 0 0 c 0 0 0 0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 0 0 0 0 g 0 0 0 0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 0 0 0 0 t 0 0 0 0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift3 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---wtAGTCATAww ; Alignment reference a 0 0 0 3555 3085 11561 987 696 896 12358 295 10949 3696 3956 c 0 0 0 1710 2379 127 828 340 11108 231 358 594 2487 2859 g 0 0 0 2296 3185 385 10135 355 456 75 245 393 2321 2134 t 0 0 0 5480 4392 968 1091 11650 581 377 12143 1105 4537 4092
MA1132.2_rc_shift3 (JUN::JUNB_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1132.2_rc (JUN::JUNB_rc); m=1/37; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.620859; ---TGmGTCAt--- ; cor=; Ncor= a 0 0 0 27.0 122.0 565.0 33.0 18.0 47.0 946.0 50.0 0 0 0 c 0 0 0 18.0 10.0 353.0 115.0 28.0 921.0 34.0 189.0 0 0 0 g 0 0 0 24.0 707.0 24.0 826.0 10.0 21.0 10.0 134.0 0 0 0 t 0 0 0 931.0 161.0 58.0 27.0 944.0 10.0 11.0 627.0 0 0 0
MA1142.2_rc_shift3 (FOSL1::JUND_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1142.2_rc (FOSL1::JUND_rc); m=2/37; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.617937; ---TkagTCAy--- ; cor=; Ncor= a 0 0 0 31.0 64.0 669.0 180.0 41.0 140.0 913.0 40.0 0 0 0 c 0 0 0 17.0 25.0 187.0 191.0 82.0 777.0 34.0 282.0 0 0 0 g 0 0 0 40.0 641.0 45.0 581.0 12.0 61.0 23.0 127.0 0 0 0 t 0 0 0 912.0 270.0 98.0 49.0 864.0 22.0 30.0 551.0 0 0 0
MA0476.2_shift3 (FOS)				; oligos_6nt_test_vs_ctrl_m4 versus MA0476.2 (FOS); m=3/37; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.600214; ---TGAsTCAT--- ; cor=; Ncor= a 0 0 0 0.0 0.0 29396.0 998.0 0.0 0.0 29396.0 258.0 0 0 0 c 0 0 0 0.0 0.0 0.0 14079.0 0.0 29396.0 0.0 5823.0 0 0 0 g 0 0 0 0.0 27108.0 0.0 11206.0 0.0 0.0 0.0 1538.0 0 0 0 t 0 0 0 29396.0 2288.0 0.0 3113.0 29396.0 0.0 0.0 21777.0 0 0 0
MA1633.2_rc_shift2 (BACH1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1633.2_rc (BACH1_rc); m=4/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.587285; --aTGAGTCAT--- ; cor=; Ncor= a 0 0 32322.0 17.0 18.0 32322.0 517.0 14.0 811.0 32322.0 1048.0 0 0 0 c 0 0 2962.0 50.0 52.0 3303.0 0.0 24.0 32322.0 25.0 6187.0 0 0 0 g 0 0 8737.0 39.0 32322.0 31.0 32322.0 38.0 13.0 25.0 1482.0 0 0 0 t 0 0 4970.0 32322.0 2834.0 534.0 551.0 32322.0 0.0 7.0 32322.0 0 0 0
MA0655.1_rc_shift2 (JDP2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0655.1_rc (JDP2_rc); m=5/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.582007; --ATGASTCAT--- ; cor=; Ncor= a 0 0 1634.0 7.0 9.0 1634.0 13.0 25.0 22.0 1634.0 8.0 0 0 0 c 0 0 5.0 0.0 3.0 6.0 434.0 2.0 1634.0 1.0 140.0 0 0 0 g 0 0 404.0 0.0 1634.0 0.0 1200.0 1.0 3.0 6.0 19.0 0 0 0 t 0 0 22.0 1634.0 22.0 6.0 14.0 1634.0 0.0 5.0 1634.0 0 0 0
MA1137.2_rc_shift2 (FOSL1::JUNB_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1137.2_rc (FOSL1::JUNB_rc); m=6/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.580972; --aTKAgTCAy--- ; cor=; Ncor= a 0 0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 0 0 0 c 0 0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 0 0 0 g 0 0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 0 0 0 t 0 0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 0 0 0
MA0490.3_rc_shift2 (JUNB_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0490.3_rc (JUNB_rc); m=7/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.579857; --ATGAGTCAT--- ; cor=; Ncor= a 0 0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 0 0 0 c 0 0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 0 0 0 g 0 0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 0 0 0 t 0 0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0 0 0 0
MA1141.2_shift2 (FOS::JUND)				; oligos_6nt_test_vs_ctrl_m4 versus MA1141.2 (FOS::JUND); m=8/37; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.575134; --rTGAGTCAy--- ; cor=; Ncor= a 0 0 593.0 0.0 0.0 894.0 75.0 0.0 29.0 999.0 21.0 0 0 0 c 0 0 104.0 1.0 0.0 91.0 40.0 0.0 970.0 0.0 290.0 0 0 0 g 0 0 266.0 0.0 871.0 0.0 867.0 0.0 0.0 0.0 77.0 0 0 0 t 0 0 38.0 999.0 129.0 15.0 19.0 999.0 0.0 0.0 612.0 0 0 0
MA1128.2_rc_shift2 (FOSL1::JUN_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1128.2_rc (FOSL1::JUN_rc); m=9/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.574508; --aTGAGTCAy--- ; cor=; Ncor= a 0 0 579.0 4.0 4.0 826.0 97.0 3.0 38.0 996.0 26.0 0 0 0 c 0 0 119.0 9.0 2.0 140.0 51.0 2.0 957.0 1.0 283.0 0 0 0 g 0 0 245.0 4.0 835.0 2.0 826.0 2.0 2.0 2.0 89.0 0 0 0 t 0 0 57.0 984.0 159.0 33.0 26.0 994.0 3.0 1.0 602.0 0 0 0
MA0491.3_rc_shift2 (JUND_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0491.3_rc (JUND_rc); m=10/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.571723; --ATGAGTCAt--- ; cor=; Ncor= a 0 0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 0 0 0 c 0 0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 0 0 0 g 0 0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 0 0 0 t 0 0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 0 0 0
MA1134.2_shift2 (FOS::JUNB)				; oligos_6nt_test_vs_ctrl_m4 versus MA1134.2 (FOS::JUNB); m=11/37; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.569122; --rTGAsTCAy--- ; cor=; Ncor= a 0 0 593.0 1.0 1.0 965.0 48.0 1.0 27.0 998.0 7.0 0 0 0 c 0 0 105.0 1.0 1.0 30.0 309.0 1.0 971.0 1.0 284.0 0 0 0 g 0 0 267.0 1.0 868.0 1.0 618.0 3.0 1.0 1.0 51.0 0 0 0 t 0 0 36.0 998.0 131.0 4.0 25.0 996.0 1.0 1.0 658.0 0 0 0
MA0477.3_rc_shift2 (FOSL1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0477.3_rc (FOSL1_rc); m=12/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.569049; --aTGAGTCAt--- ; cor=; Ncor= a 0 0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 0 0 0 c 0 0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 0 0 0 g 0 0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 0 0 0 t 0 0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 0 0 0
MA1130.2_shift2 (FOSL2::JUN)				; oligos_6nt_test_vs_ctrl_m4 versus MA1130.2 (FOSL2::JUN); m=13/37; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.568229; --rTGAGTCAy--- ; cor=; Ncor= a 0 0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 0 0 0 c 0 0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 0 0 0 g 0 0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 0 0 0 t 0 0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 0 0 0
MA1135.2_rc_shift2 (FOSB::JUNB_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1135.2_rc (FOSB::JUNB_rc); m=14/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.56775; --rTGAsTCAy--- ; cor=; Ncor= a 0 0 578.0 1.0 1.0 958.0 61.0 1.0 19.0 998.0 20.0 0 0 0 c 0 0 126.0 1.0 1.0 39.0 309.0 1.0 980.0 1.0 321.0 0 0 0 g 0 0 259.0 0.0 808.0 1.0 596.0 1.0 0.0 0.0 61.0 0 0 0 t 0 0 37.0 998.0 191.0 2.0 34.0 997.0 1.0 1.0 598.0 0 0 0
MA1138.2_rc_shift2 (FOSL2::JUNB_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1138.2_rc (FOSL2::JUNB_rc); m=15/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.567126; --rTGAsTCAy--- ; cor=; Ncor= a 0 0 602.0 0.0 0.0 973.0 85.0 0.0 14.0 999.0 13.0 0 0 0 c 0 0 112.0 0.0 0.0 26.0 292.0 0.0 985.0 0.0 314.0 0 0 0 g 0 0 251.0 0.0 831.0 0.0 568.0 0.0 0.0 0.0 53.0 0 0 0 t 0 0 35.0 999.0 168.0 1.0 54.0 999.0 0.0 0.0 621.0 0 0 0
MA1144.2_rc_shift2 (FOSL2::JUND_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1144.2_rc (FOSL2::JUND_rc); m=16/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.566763; --rTGAsTCAy--- ; cor=; Ncor= a 0 0 583.0 0.0 0.0 934.0 58.0 0.0 10.0 999.0 14.0 0 0 0 c 0 0 113.0 0.0 0.0 60.0 292.0 0.0 990.0 0.0 291.0 0 0 0 g 0 0 266.0 0.0 860.0 0.0 604.0 1.0 0.0 0.0 60.0 0 0 0 t 0 0 38.0 999.0 140.0 6.0 46.0 998.0 0.0 0.0 634.0 0 0 0
MA0835.3_rc_shift3 (BATF3_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0835.3_rc (BATF3_rc); m=17/37; ncol2=7; w=0; offset=0; strand=R; shift=3; score=0.565784; ---TGAGTCA---- ; cor=; Ncor= a 0 0 0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 0 0 0 0 c 0 0 0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 0 0 0 0 g 0 0 0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 0 0 0 0 t 0 0 0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 0 0 0 0
MA1988.2_rc_shift3 (Atf3_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1988.2_rc (Atf3_rc); m=18/37; ncol2=7; w=0; offset=0; strand=R; shift=3; score=0.565524; ---TGAGTCA---- ; cor=; Ncor= a 0 0 0 887.0 2087.0 50485.0 2262.0 547.0 3914.0 53085.0 0 0 0 0 c 0 0 0 1086.0 574.0 1365.0 4498.0 471.0 48774.0 357.0 0 0 0 0 g 0 0 0 673.0 46610.0 504.0 45670.0 356.0 443.0 669.0 0 0 0 0 t 0 0 0 52046.0 5421.0 2338.0 2262.0 53318.0 1561.0 581.0 0 0 0 0
MA0099.4_shift2 (FOS::JUN)				; oligos_6nt_test_vs_ctrl_m4 versus MA0099.4 (FOS::JUN); m=19/37; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.565437; --rTGAGTCAy--- ; cor=; Ncor= a 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 0 0 0 c 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 0 0 0 g 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 0 0 0 t 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 0 0 0
MA0462.3_rc_shift3 (BATF::JUN_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0462.3_rc (BATF::JUN_rc); m=20/37; ncol2=7; w=0; offset=0; strand=R; shift=3; score=0.563671; ---TGAGTCA---- ; cor=; Ncor= a 0 0 0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 0 0 0 0 c 0 0 0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 0 0 0 0 g 0 0 0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 0 0 0 0 t 0 0 0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 0 0 0 0
MA1634.2_rc_shift3 (BATF_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1634.2_rc (BATF_rc); m=21/37; ncol2=7; w=0; offset=0; strand=R; shift=3; score=0.562702; ---TGAGTCA---- ; cor=; Ncor= a 0 0 0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 0 0 0 0 c 0 0 0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 0 0 0 0 g 0 0 0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 0 0 0 0 t 0 0 0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 0 0 0 0
MA1928.2_shift3 (BNC2)				; oligos_6nt_test_vs_ctrl_m4 versus MA1928.2 (BNC2); m=22/37; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.556035; ---TGAGTCA---- ; cor=; Ncor= a 0 0 0 147.0 134.0 5303.0 227.0 86.0 216.0 5483.0 0 0 0 0 c 0 0 0 66.0 72.0 117.0 838.0 106.0 5238.0 54.0 0 0 0 0 g 0 0 0 96.0 5184.0 61.0 4332.0 80.0 112.0 56.0 0 0 0 0 t 0 0 0 5363.0 282.0 191.0 275.0 5400.0 106.0 79.0 0 0 0 0
MA0478.2_rc_shift2 (FOSL2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0478.2_rc (FOSL2_rc); m=23/37; ncol2=10; w=-1; offset=-1; strand=R; shift=2; score=0.54184; --vTGAsTCAyy-- ; cor=; Ncor= a 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 494.0 0 0 c 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 2707.0 0 0 g 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 592.0 0 0 t 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0 1525.0 0 0
MA0489.3_shift3 (Jun)				; oligos_6nt_test_vs_ctrl_m4 versus MA0489.3 (Jun); m=24/37; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.539846; ---TGACTCAt--- ; cor=; Ncor= a 0 0 0 1166.0 968.0 89245.0 3860.0 3034.0 3691.0 89496.0 4975.0 0 0 0 c 0 0 0 716.0 1468.0 1493.0 71105.0 920.0 88215.0 1827.0 14637.0 0 0 0 g 0 0 0 718.0 88928.0 1717.0 14953.0 1009.0 1228.0 1147.0 13040.0 0 0 0 t 0 0 0 91503.0 2739.0 1648.0 4185.0 89140.0 969.0 1633.0 61451.0 0 0 0
MA0841.2_rc_shift1 (NFE2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0841.2_rc (NFE2_rc); m=25/37; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.538858; -sATGAGTCAT--- ; cor=; Ncor= a 0 3417.0 18831.0 5.0 3.0 18831.0 17.0 4.0 2.0 18831.0 5.0 0 0 0 c 0 5067.0 10.0 8.0 0.0 3.0 4472.0 0.0 18831.0 0.0 1306.0 0 0 0 g 0 9860.0 2689.0 13.0 18831.0 20.0 14360.0 11.0 0.0 8.0 9.0 0 0 0 t 0 487.0 0.0 18831.0 1.0 0.0 37.0 18831.0 0.0 2.0 18831.0 0 0 0
MA0150.3_rc_shift0 (Nfe2l2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0150.3_rc (Nfe2l2_rc); m=26/37; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.514591; TGCTGAGTCAy--- ; cor=; Ncor= a 46.0 4.0 7.0 56.0 66.0 606.0 55.0 0.0 15.0 726.0 5.0 0 0 0 c 31.0 19.0 698.0 90.0 46.0 16.0 118.0 0.0 711.0 0.0 205.0 0 0 0 g 26.0 699.0 11.0 3.0 549.0 20.0 533.0 0.0 0.0 0.0 28.0 0 0 0 t 623.0 4.0 10.0 577.0 65.0 84.0 20.0 726.0 0.0 0.0 488.0 0 0 0
MA1101.3_rc_shift1 (BACH2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1101.3_rc (BACH2_rc); m=27/37; ncol2=11; w=-2; offset=-2; strand=R; shift=1; score=0.505731; -sATGAsTCATG-- ; cor=; Ncor= a 0 5274.0 63746.0 0.0 3.0 67975.0 18.0 6.0 54.0 68266.0 0.0 8116.0 0 0 c 0 30498.0 2028.0 11.0 0.0 856.0 30785.0 13.0 68240.0 1.0 15304.0 6727.0 0 0 g 0 35220.0 11634.0 2.0 68215.0 20.0 37438.0 1088.0 0.0 7.0 260.0 61580.0 0 0 t 0 4522.0 47.0 68264.0 115.0 3.0 50.0 67846.0 6.0 1.0 62993.0 9369.0 0 0
MA0089.3_rc_shift0 (MAFG::NFE2L1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0089.3_rc (MAFG::NFE2L1_rc); m=28/37; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.505409; TGCTGAGTCAT--- ; cor=; Ncor= a 293.0 26.0 263.0 98.0 97.0 3091.0 83.0 6.0 24.0 3337.0 11.0 0 0 0 c 142.0 33.0 3018.0 78.0 25.0 35.0 358.0 10.0 3308.0 2.0 706.0 0 0 0 g 64.0 3281.0 18.0 9.0 3049.0 12.0 2864.0 4.0 7.0 5.0 57.0 0 0 0 t 2857.0 16.0 57.0 3171.0 185.0 218.0 51.0 3336.0 17.0 12.0 2582.0 0 0 0
MA1143.2_rc_shift2 (FOSL1::JUND_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA1143.2_rc (FOSL1::JUND_rc); m=29/37; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score=0.504913; --tkrcGTCAy--- ; cor=; Ncor= a 0 0 188.0 41.0 582.0 176.0 68.0 44.0 82.0 870.0 40.0 0 0 0 c 0 0 100.0 83.0 39.0 649.0 64.0 41.0 777.0 44.0 324.0 0 0 0 g 0 0 66.0 330.0 262.0 59.0 835.0 45.0 101.0 50.0 75.0 0 0 0 t 0 0 645.0 546.0 117.0 116.0 32.0 870.0 39.0 36.0 561.0 0 0 0
MA0676.1_shift2 (Nr2e1)				; oligos_6nt_test_vs_ctrl_m4 versus MA0676.1 (Nr2e1); m=30/37; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score= 0.5036; --aaAAGTCAA--- ; cor=; Ncor= a 0 0 1118.0 1118.0 1118.0 1118.0 40.0 0.0 11.0 1118.0 1118.0 0 0 0 c 0 0 244.0 89.0 1.0 0.0 0.0 58.0 1118.0 0.0 131.0 0 0 0 g 0 0 191.0 448.0 101.0 74.0 1118.0 0.0 12.0 0.0 117.0 0 0 0 t 0 0 401.0 369.0 19.0 5.0 8.0 1118.0 112.0 0.0 247.0 0 0 0
MA0501.2_rc_shift0 (MAF::NFE2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0501.2_rc (MAF::NFE2_rc); m=31/37; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score=0.502443; TGCTGAGTCAy--- ; cor=; Ncor= a 69.0 5.0 37.0 61.0 51.0 967.0 37.0 0.0 8.0 1090.0 4.0 0 0 0 c 73.0 22.0 1041.0 51.0 22.0 12.0 166.0 0.0 1082.0 0.0 334.0 0 0 0 g 17.0 1063.0 4.0 0.0 937.0 1.0 871.0 0.0 0.0 0.0 26.0 0 0 0 t 931.0 0.0 8.0 978.0 80.0 110.0 16.0 1090.0 0.0 0.0 726.0 0 0 0
MA0905.2_shift6 (HOXC10)				; oligos_6nt_test_vs_ctrl_m4 versus MA0905.2 (HOXC10); m=32/37; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.491137; ------rTCrTwAA ; cor=; Ncor= a 0 0 0 0 0 0 1495.0 26.0 315.0 2638.0 27.0 2165.0 3211.0 3211.0 c 0 0 0 0 0 0 1044.0 245.0 3211.0 6.0 0.0 5.0 3.0 76.0 g 0 0 0 0 0 0 3211.0 0.0 12.0 3211.0 0.0 4.0 5.0 86.0 t 0 0 0 0 0 0 15.0 3211.0 152.0 24.0 3211.0 1047.0 102.0 187.0
MA0591.2_rc_shift0 (Bach1::Mafk_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0591.2_rc (Bach1::Mafk_rc); m=33/37; ncol2=12; w=-3; offset=-3; strand=R; shift=0; score=0.47738; TGCTGAGTCAys-- ; cor=; Ncor= a 6.0 0.0 0.0 2.0 0.0 109.0 0.0 1.0 7.0 111.0 0.0 4.0 0 0 c 6.0 0.0 113.0 3.0 2.0 4.0 20.0 0.0 107.0 0.0 32.0 54.0 0 0 g 4.0 114.0 1.0 1.0 107.0 0.0 94.0 0.0 0.0 1.0 16.0 41.0 0 0 t 98.0 0.0 0.0 108.0 5.0 1.0 0.0 113.0 0.0 2.0 66.0 15.0 0 0
MA0496.4_rc_shift1 (MAFK_rc)				; oligos_6nt_test_vs_ctrl_m4 versus MA0496.4_rc (MAFK_rc); m=34/37; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score= 0.4751; -GCTGAGTCAk--- ; cor=; Ncor= a 0 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 0 0 0 c 0 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 0 0 0 g 0 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 0 0 0 t 0 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0 0 0 0
MA1473.2_shift6 (CDX4)				; oligos_6nt_test_vs_ctrl_m4 versus MA1473.2 (CDX4); m=35/37; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.473922; ------GymATAAA ; cor=; Ncor= a 0 0 0 0 0 0 2533.0 0.0 12392.0 23367.0 0.0 23367.0 23367.0 23367.0 c 0 0 0 0 0 0 1064.0 14682.0 10976.0 0.0 0.0 0.0 0.0 57.0 g 0 0 0 0 0 0 23367.0 0.0 25.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 98.0 8686.0 0.0 0.0 23367.0 0.0 0.0 0.0
MA1503.2_shift6 (HOXB9)				; oligos_6nt_test_vs_ctrl_m4 versus MA1503.2 (HOXB9); m=36/37; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.469879; ------gTCRTAAA ; cor=; Ncor= a 0 0 0 0 0 0 622.0 0.0 0.0 644.0 0.0 1842.0 1842.0 1842.0 c 0 0 0 0 0 0 280.0 43.0 1842.0 6.0 0.0 12.0 0.0 42.0 g 0 0 0 0 0 0 1842.0 0.0 0.0 1842.0 1.0 3.0 0.0 0.0 t 0 0 0 0 0 0 2.0 1842.0 0.0 0.0 1842.0 462.0 0.0 17.0
MA0485.3_shift6 (HOXC9)				; oligos_6nt_test_vs_ctrl_m4 versus MA0485.3 (HOXC9); m=37/37; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.467195; ------GTCGTAAA ; cor=; Ncor= a 0 0 0 0 0 0 4347.0 0.0 0.0 4250.0 5.0 15541.0 15541.0 15541.0 c 0 0 0 0 0 0 1760.0 147.0 15541.0 0.0 5.0 0.0 0.0 12.0 g 0 0 0 0 0 0 15541.0 0.0 0.0 15541.0 11.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0.0 15541.0 0.0 0.0 15541.0 2094.0 0.0 0.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift2 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=10; shift=2; ncol=12; --wtACTTATww ; Alignment reference a 0 0 1261 827 3641 86 313 69 3791 37 1190 959 c 0 0 707 928 27 3590 36 21 8 134 674 756 g 0 0 639 754 89 20 487 9 5 11 822 653 t 0 0 1202 1300 52 113 2973 3710 5 3627 1123 1441
MA0124.3_shift2 (Nkx3-1)				; oligos_6nt_test_vs_ctrl_m3 versus MA0124.3 (Nkx3-1); m=1/17; ncol2=7; w=0; offset=0; strand=D; shift=2; score=0.601632; --cCACTTA--- ; cor=; Ncor= a 0 0 981.0 0.0 5335.0 59.0 0.0 0.0 5335.0 0 0 0 c 0 0 5335.0 5335.0 28.0 5335.0 1.0 254.0 273.0 0 0 0 g 0 0 1776.0 10.0 10.0 9.0 0.0 0.0 173.0 0 0 0 t 0 0 275.0 336.0 88.0 9.0 5335.0 5335.0 523.0 0 0 0
MA0036.4_shift5 (GATA2)				; oligos_6nt_test_vs_ctrl_m3 versus MA0036.4 (GATA2); m=2/17; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.595669; -----CTTATCT ; cor=; Ncor= a 0 0 0 0 0 940.0 444.0 417.0 14098.0 145.0 96.0 2373.0 c 0 0 0 0 0 10607.0 259.0 34.0 14.0 77.0 13786.0 492.0 g 0 0 0 0 0 1223.0 150.0 21.0 43.0 48.0 126.0 367.0 t 0 0 0 0 0 1443.0 13360.0 13741.0 58.0 13943.0 205.0 10981.0
MA0482.3_shift4 (GATA4)				; oligos_6nt_test_vs_ctrl_m3 versus MA0482.3 (GATA4); m=3/17; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.56832; ----cCTTATCT ; cor=; Ncor= a 0 0 0 0 3977.0 3150.0 1586.0 1650.0 54420.0 770.0 480.0 7659.0 c 0 0 0 0 38289.0 50062.0 1429.0 1377.0 1703.0 582.0 56544.0 1792.0 g 0 0 0 0 5099.0 1103.0 749.0 808.0 1245.0 539.0 568.0 1376.0 t 0 0 0 0 11649.0 4699.0 55250.0 55179.0 1646.0 57123.0 1422.0 48187.0
MA1104.3_shift4 (GATA6)				; oligos_6nt_test_vs_ctrl_m3 versus MA1104.3 (GATA6); m=4/17; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.567726; ----TCTTATCT ; cor=; Ncor= a 0 0 0 0 5912.0 4535.0 2560.0 5044.0 76686.0 1507.0 1096.0 13149.0 c 0 0 0 0 11831.0 62936.0 1439.0 1393.0 815.0 852.0 75930.0 3228.0 g 0 0 0 0 7066.0 6459.0 580.0 615.0 819.0 456.0 712.0 1810.0 t 0 0 0 0 54635.0 5514.0 74865.0 72392.0 1124.0 76629.0 1706.0 61257.0
MA1970.2_shift4 (TRPS1)				; oligos_6nt_test_vs_ctrl_m3 versus MA1970.2 (TRPS1); m=5/17; ncol2=8; w=0; offset=2; strand=D; shift=4; score= 0.5672; ----TCTTATCT ; cor=; Ncor= a 0 0 0 0 1359.0 941.0 645.0 874.0 17440.0 312.0 252.0 2790.0 c 0 0 0 0 2547.0 14262.0 560.0 462.0 215.0 265.0 17146.0 792.0 g 0 0 0 0 1749.0 1426.0 320.0 449.0 329.0 179.0 263.0 716.0 t 0 0 0 0 12628.0 1654.0 16758.0 16498.0 299.0 17527.0 622.0 13985.0
MA0037.5_shift4 (Gata3)				; oligos_6nt_test_vs_ctrl_m3 versus MA0037.5 (Gata3); m=6/17; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.562307; ----tCTTATCT ; cor=; Ncor= a 0 0 0 0 2016.0 946.0 794.0 984.0 22974.0 427.0 294.0 3100.0 c 0 0 0 0 3859.0 19702.0 928.0 758.0 566.0 282.0 23839.0 903.0 g 0 0 0 0 2551.0 2165.0 280.0 960.0 528.0 291.0 255.0 608.0 t 0 0 0 0 16442.0 2055.0 22866.0 22166.0 800.0 23868.0 480.0 20257.0
MA0122.4_shift0 (Nkx3-2)				; oligos_6nt_test_vs_ctrl_m3 versus MA0122.4 (Nkx3-2); m=7/17; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.522916; aamCACTTAa-- ; cor=; Ncor= a 5714.0 5598.0 2604.0 79.0 9907.0 151.0 50.0 95.0 9680.0 5620.0 0 0 c 952.0 1109.0 5079.0 9900.0 82.0 9965.0 32.0 138.0 147.0 991.0 0 0 g 1466.0 1154.0 1504.0 23.0 19.0 10.0 29.0 68.0 68.0 1368.0 0 0 t 2088.0 2359.0 1033.0 218.0 212.0 94.0 10109.0 9919.0 325.0 2241.0 0 0
MA0914.2_shift3 (ISL2)				; oligos_6nt_test_vs_ctrl_m3 versus MA0914.2 (ISL2); m=8/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.520318; ---CAmTTA--- ; cor=; Ncor= a 0 0 0 160.0 5631.0 3161.0 218.0 278.0 5631.0 0 0 0 c 0 0 0 5631.0 162.0 5631.0 130.0 718.0 206.0 0 0 0 g 0 0 0 126.0 134.0 171.0 169.0 13.0 59.0 0 0 0 t 0 0 0 1019.0 248.0 398.0 5631.0 5631.0 1354.0 0 0 0
MA0035.5_shift5 (GATA1)				; oligos_6nt_test_vs_ctrl_m3 versus MA0035.5 (GATA1); m=9/17; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.50095; -----CTWATCT ; cor=; Ncor= a 0 0 0 0 0 3953.0 1314.0 49692.0 67550.0 2206.0 2567.0 7397.0 c 0 0 0 0 0 62419.0 595.0 710.0 1292.0 1238.0 65937.0 3025.0 g 0 0 0 0 0 2712.0 652.0 856.0 988.0 618.0 1471.0 765.0 t 0 0 0 0 0 2744.0 69267.0 20570.0 1998.0 67766.0 1853.0 60641.0
MA1963.2_rc_shift6 (SATB1_rc)				; oligos_6nt_test_vs_ctrl_m3 versus MA1963.2_rc (SATB1_rc); m=10/17; ncol2=7; w=0; offset=4; strand=R; shift=6; score=0.439601; ------TTATTA ; cor=; Ncor= a 0 0 0 0 0 0 1612.0 841.0 33685.0 1281.0 169.0 33500.0 c 0 0 0 0 0 0 1071.0 889.0 123.0 120.0 221.0 37.0 g 0 0 0 0 0 0 881.0 485.0 128.0 115.0 164.0 195.0 t 0 0 0 0 0 0 30660.0 32009.0 288.0 32708.0 33670.0 492.0
MA1577.2_shift3 (TLX2)				; oligos_6nt_test_vs_ctrl_m3 versus MA1577.2 (TLX2); m=11/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.430997; ---yAATTA--- ; cor=; Ncor= a 0 0 0 1435.0 7799.0 7799.0 0.0 0.0 7799.0 0 0 0 c 0 0 0 7799.0 0.0 0.0 0.0 0.0 0.0 0 0 0 g 0 0 0 1112.0 80.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 8156.0 0.0 0.0 7799.0 7799.0 0.0 0 0 0
MA0125.2_rc_shift3 (Nobox_rc)				; oligos_6nt_test_vs_ctrl_m3 versus MA0125.2_rc (Nobox_rc); m=12/17; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.430333; ---yAATTA--- ; cor=; Ncor= a 0 0 0 1.0 32.0 34.0 0.0 2.0 37.0 0 0 0 c 0 0 0 22.0 4.0 2.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0.0 0.0 1.0 0.0 0.0 1.0 0 0 0 t 0 0 0 15.0 2.0 1.0 38.0 36.0 0.0 0 0 0
MA0699.2_shift3 (LBX2)				; oligos_6nt_test_vs_ctrl_m3 versus MA0699.2 (LBX2); m=13/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.429145; ---yAATTA--- ; cor=; Ncor= a 0 0 0 157.0 2996.0 2996.0 0.0 150.0 2996.0 0 0 0 c 0 0 0 1634.0 338.0 290.0 29.0 258.0 34.0 0 0 0 g 0 0 0 109.0 325.0 130.0 118.0 293.0 106.0 0 0 0 t 0 0 0 1362.0 57.0 89.0 2996.0 2996.0 148.0 0 0 0
MA0654.2_shift3 (ISX)				; oligos_6nt_test_vs_ctrl_m3 versus MA0654.2 (ISX); m=14/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.425665; ---yAATTA--- ; cor=; Ncor= a 0 0 0 10.0 2065.0 2065.0 0.0 0.0 2065.0 0 0 0 c 0 0 0 1003.0 48.0 16.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0.0 5.0 0.0 0.0 24.0 0.0 0 0 0 t 0 0 0 1061.0 24.0 10.0 2065.0 2065.0 49.0 0 0 0
MA0718.2_shift3 (RAX)				; oligos_6nt_test_vs_ctrl_m3 versus MA0718.2 (RAX); m=15/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.425221; ---yAATTA--- ; cor=; Ncor= a 0 0 0 214.0 2412.0 2412.0 123.0 71.0 2412.0 0 0 0 c 0 0 0 1281.0 17.0 38.0 0.0 71.0 0.0 0 0 0 g 0 0 0 25.0 3.0 12.0 0.0 49.0 20.0 0 0 0 t 0 0 0 1131.0 40.0 24.0 2412.0 2412.0 126.0 0 0 0
MA0894.2_rc_shift3 (HESX1_rc)				; oligos_6nt_test_vs_ctrl_m3 versus MA0894.2_rc (HESX1_rc); m=16/17; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.423552; ---yAATTA--- ; cor=; Ncor= a 0 0 0 97.0 4072.0 4072.0 0.0 31.0 4072.0 0 0 0 c 0 0 0 2180.0 0.0 15.0 9.0 53.0 34.0 0 0 0 g 0 0 0 38.0 15.0 0.0 7.0 0.0 0.0 0 0 0 t 0 0 0 1892.0 0.0 0.0 4072.0 4072.0 187.0 0 0 0
MA0890.2_shift3 (GBX2)				; oligos_6nt_test_vs_ctrl_m3 versus MA0890.2 (GBX2); m=17/17; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.420628; ---yAATTA--- ; cor=; Ncor= a 0 0 0 699.0 27366.0 27366.0 0.0 318.0 27366.0 0 0 0 c 0 0 0 15511.0 570.0 250.0 61.0 570.0 73.0 0 0 0 g 0 0 0 106.0 1113.0 114.0 65.0 673.0 30.0 0 0 0 t 0 0 0 11855.0 227.0 25.0 27366.0 27366.0 650.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=11; shift=4; ncol=15; ----wwTATTCAAww ; Alignment reference a 0 0 0 0 3011 3222 156 8486 325 665 859 7531 6655 3080 2708 c 0 0 0 0 1346 1211 62 36 294 201 6497 329 495 1408 1628 g 0 0 0 0 1526 1427 76 57 224 322 197 60 385 1305 1259 t 0 0 0 0 2774 2797 8363 78 7814 7469 1104 737 1122 2864 3062
MA0627.3_shift6 (POU2F3)				; oligos_6nt_test_vs_ctrl_m1 versus MA0627.3 (POU2F3); m=1/14; ncol2=9; w=0; offset=2; strand=D; shift=6; score=0.600187; ------tATGCAAAT ; cor=; Ncor= a 0 0 0 0 0 0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 c 0 0 0 0 0 0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 g 0 0 0 0 0 0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 t 0 0 0 0 0 0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0
MA0043.4_shift5 (HLF)				; oligos_6nt_test_vs_ctrl_m1 versus MA0043.4 (HLF); m=2/14; ncol2=9; w=0; offset=1; strand=D; shift=5; score=0.599602; -----TTATGYAAy- ; cor=; Ncor= a 0 0 0 0 0 295.0 162.0 22746.0 197.0 2418.0 369.0 24156.0 24055.0 1399.0 0 c 0 0 0 0 0 242.0 96.0 125.0 1548.0 112.0 17203.0 122.0 67.0 13237.0 0 g 0 0 0 0 0 148.0 895.0 1344.0 253.0 21705.0 199.0 48.0 189.0 3300.0 0 t 0 0 0 0 0 23739.0 23271.0 209.0 22426.0 189.0 6653.0 98.0 113.0 6488.0 0
MA0792.1_shift6 (POU5F1B)				; oligos_6nt_test_vs_ctrl_m1 versus MA0792.1 (POU5F1B); m=3/14; ncol2=9; w=0; offset=2; strand=D; shift=6; score=0.598129; ------TATGywAAT ; cor=; Ncor= a 0 0 0 0 0 0 1326.0 9519.0 171.0 322.0 398.0 6299.0 9519.0 9519.0 1559.0 c 0 0 0 0 0 0 1778.0 21.0 364.0 94.0 9519.0 51.0 144.0 65.0 537.0 g 0 0 0 0 0 0 808.0 67.0 206.0 9519.0 1293.0 65.0 856.0 97.0 750.0 t 0 0 0 0 0 0 9519.0 84.0 9519.0 1790.0 3828.0 3220.0 896.0 203.0 9519.0
MA0025.3_shift5 (NFIL3)				; oligos_6nt_test_vs_ctrl_m1 versus MA0025.3 (NFIL3); m=4/14; ncol2=9; w=0; offset=1; strand=D; shift=5; score=0.597425; -----TTATGyAAt- ; cor=; Ncor= a 0 0 0 0 0 870.0 468.0 21353.0 659.0 1460.0 1358.0 21848.0 21911.0 2193.0 0 c 0 0 0 0 0 681.0 208.0 220.0 1511.0 467.0 12004.0 543.0 251.0 4959.0 0 g 0 0 0 0 0 518.0 1714.0 990.0 492.0 20459.0 454.0 171.0 360.0 2701.0 0 t 0 0 0 0 0 20927.0 20606.0 433.0 20334.0 610.0 9180.0 434.0 474.0 13143.0 0
MA0785.2_shift6 (POU2F1)				; oligos_6nt_test_vs_ctrl_m1 versus MA0785.2 (POU2F1); m=5/14; ncol2=9; w=0; offset=2; strand=D; shift=6; score=0.593732; ------TATGcwAAT ; cor=; Ncor= a 0 0 0 0 0 0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 c 0 0 0 0 0 0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 g 0 0 0 0 0 0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 t 0 0 0 0 0 0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0
MA0784.3_rc_shift4 (POU1F1_rc)				; oligos_6nt_test_vs_ctrl_m1 versus MA0784.3_rc (POU1F1_rc); m=6/14; ncol2=14; w=0; offset=0; strand=R; shift=4; score=0.55575; ----awTATGCwAAT ; cor=; Ncor= a 0 0 0 0 3278.0 1804.0 59.0 4127.0 17.0 3.0 16.0 2563.0 4127.0 4127.0 31.0 c 0 0 0 0 384.0 57.0 5.0 0.0 5.0 1.0 3708.0 0.0 2.0 1.0 28.0 g 0 0 0 0 702.0 165.0 5.0 3.0 9.0 4127.0 67.0 0.0 13.0 0.0 7.0 t 0 0 0 0 849.0 2323.0 4127.0 3.0 4127.0 54.0 419.0 1564.0 91.0 0.0 4127.0
MA0619.2_rc_shift7 (LIN54_rc)				; oligos_6nt_test_vs_ctrl_m1 versus MA0619.2_rc (LIN54_rc); m=7/14; ncol2=7; w=0; offset=3; strand=R; shift=7; score=0.547541; -------ATTyAAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 685.0 0.0 0.0 0.0 788.0 999.0 999.0 0 c 0 0 0 0 0 0 0 0.0 0.0 0.0 562.0 0.0 0.0 0.0 0 g 0 0 0 0 0 0 0 211.0 0.0 0.0 0.0 212.0 0.0 0.0 0 t 0 0 0 0 0 0 0 104.0 999.0 999.0 438.0 0.0 0.0 0.0 0
MA0507.3_shift5 (POU2F2)				; oligos_6nt_test_vs_ctrl_m1 versus MA0507.3 (POU2F2); m=8/14; ncol2=13; w=0; offset=1; strand=D; shift=5; score=0.520855; -----wTATGCAAAT ; cor=; Ncor= a 0 0 0 0 0 5892.0 34.0 9207.0 0.0 0.0 2.0 7279.0 9207.0 9207.0 56.0 c 0 0 0 0 0 435.0 100.0 0.0 13.0 0.0 8014.0 0.0 7.0 5.0 8.0 g 0 0 0 0 0 2020.0 4.0 0.0 2.0 9207.0 127.0 0.0 23.0 0.0 35.0 t 0 0 0 0 0 3315.0 9207.0 0.0 9207.0 111.0 1193.0 1929.0 57.0 8.0 9207.0
MA1115.2_shift7 (POU5F1)				; oligos_6nt_test_vs_ctrl_m1 versus MA1115.2 (POU5F1); m=9/14; ncol2=7; w=0; offset=3; strand=D; shift=7; score=0.469156; -------ATGCAAA- ; cor=; Ncor= a 0 0 0 0 0 0 0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 0 c 0 0 0 0 0 0 0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 0 g 0 0 0 0 0 0 0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 0 t 0 0 0 0 0 0 0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 0
MA0909.4_rc_shift4 (Hoxd13_rc)				; oligos_6nt_test_vs_ctrl_m1 versus MA0909.4_rc (Hoxd13_rc); m=10/14; ncol2=7; w=0; offset=0; strand=R; shift=4; score=0.447851; ----TTTATTG---- ; cor=; Ncor= a 0 0 0 0 667.0 15.0 11.0 5972.0 30.0 49.0 61.0 0 0 0 0 c 0 0 0 0 379.0 2.0 7.0 3.0 11.0 148.0 34.0 0 0 0 0 g 0 0 0 0 704.0 37.0 4.0 2.0 13.0 5.0 5866.0 0 0 0 0 t 0 0 0 0 4227.0 5923.0 5955.0 0.0 5923.0 5775.0 16.0 0 0 0 0
MA0790.2_rc_shift0 (POU4F1_rc)				; oligos_6nt_test_vs_ctrl_m1 versus MA0790.2_rc (POU4F1_rc); m=11/14; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.445366; ATtAATwATkcA--- ; cor=; Ncor= a 3102.0 15.0 1116.0 3218.0 3201.0 638.0 1316.0 3511.0 139.0 76.0 750.0 3553.0 0 0 0 c 220.0 54.0 696.0 262.0 129.0 144.0 145.0 15.0 25.0 29.0 3857.0 125.0 0 0 0 g 359.0 36.0 668.0 72.0 106.0 124.0 102.0 15.0 47.0 1661.0 376.0 236.0 0 0 0 t 276.0 3181.0 2825.0 390.0 465.0 2915.0 2811.0 91.0 2950.0 1720.0 1032.0 153.0 0 0 0
MA0602.2_rc_shift3 (Arid5a_rc)				; oligos_6nt_test_vs_ctrl_m1 versus MA0602.2_rc (Arid5a_rc); m=12/14; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.44401; ---cAATATTr---- ; cor=; Ncor= a 0 0 0 22.0 83.0 96.0 6.0 93.0 2.0 5.0 48.0 0 0 0 0 c 0 0 0 52.0 4.0 1.0 1.0 1.0 1.0 7.0 3.0 0 0 0 0 g 0 0 0 3.0 9.0 1.0 1.0 0.0 0.0 3.0 32.0 0 0 0 0 t 0 0 0 23.0 4.0 2.0 93.0 6.0 96.0 85.0 16.0 0 0 0 0
MA0791.2_rc_shift0 (POU4F3_rc)				; oligos_6nt_test_vs_ctrl_m1 versus MA0791.2_rc (POU4F3_rc); m=13/14; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.435694; ATtAATwATkcA--- ; cor=; Ncor= a 3774.0 22.0 868.0 3728.0 3805.0 658.0 1579.0 4004.0 132.0 69.0 1067.0 4134.0 0 0 0 c 180.0 25.0 789.0 194.0 166.0 126.0 133.0 25.0 36.0 24.0 4723.0 303.0 0 0 0 g 355.0 19.0 651.0 66.0 101.0 121.0 126.0 21.0 42.0 2014.0 374.0 321.0 0 0 0 t 212.0 3447.0 3100.0 479.0 433.0 3106.0 3041.0 96.0 3264.0 1868.0 1067.0 292.0 0 0 0
MA0151.1_shift7 (Arid3a)				; oligos_6nt_test_vs_ctrl_m1 versus MA0151.1 (Arid3a); m=14/14; ncol2=6; w=0; offset=3; strand=D; shift=7; score=0.415438; -------ATyAAA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 c 0 0 0 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 t 0 0 0 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift2 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=15; shift=2; ncol=17; --aaAAAAAmAAAAAaa ; Alignment reference a 0 0 8028 8188 13312 13832 14137 13872 14043 6486 14133 13586 14092 13827 13220 8209 8190 c 0 0 1918 2290 713 580 506 432 476 6797 474 624 475 609 856 2147 2174 g 0 0 1989 1821 475 568 347 420 366 857 195 708 388 401 497 2110 2070 t 0 0 3422 3058 857 377 367 633 472 1217 555 439 402 520 784 2891 2923
MA1623.2_shift5 (Stat2)				; oligos_7nt_test_vs_ctrl_m2 versus MA1623.2 (Stat2); m=1/5; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.507141; -----gAAACAGAAA-- ; cor=; Ncor= a 0 0 0 0 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 0 c 0 0 0 0 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 0 g 0 0 0 0 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 0 t 0 0 0 0 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0 0
MA1125.2_shift9 (ZNF384)				; oligos_7nt_test_vs_ctrl_m2 versus MA1125.2 (ZNF384); m=2/5; ncol2=8; w=0; offset=7; strand=D; shift=9; score=0.502369; ---------AAAAAAaa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 c 0 0 0 0 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 g 0 0 0 0 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 t 0 0 0 0 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0
MA1487.3_shift0 (FOXE1)				; oligos_7nt_test_vs_ctrl_m2 versus MA1487.3 (FOXE1); m=3/5; ncol2=12; w=-2; offset=-2; strand=D; shift=0; score=0.473728; yTAARyAAACAa----- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0 0 0
MA0847.4_shift0 (FOXD2)				; oligos_7nt_test_vs_ctrl_m2 versus MA0847.4 (FOXD2); m=4/5; ncol2=11; w=-2; offset=-2; strand=D; shift=0; score=0.402256; yTAAryAAACA------ ; cor=; Ncor= a 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 0 0 0 0 0 0 c 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 0 0 0 0 0 0 g 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 0 0 0 0 0 0 t 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0 0 0 0 0 0 0
MA2124.1_rc_shift2 (Hmga1_rc)				; oligos_7nt_test_vs_ctrl_m2 versus MA2124.1_rc (Hmga1_rc); m=5/5; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.401711; --wTAAAAAT------- ; cor=; Ncor= a 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 0 0 0 0 0 c 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 0 0 0 0 0 g 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 0 0 0 0 0 t 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift3 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=13; shift=3; ncol=16; ---wwATAAATGTGww ; Alignment reference a 0 0 0 1289 1007 3008 196 3096 2600 3104 126 363 205 349 986 1126 c 0 0 0 501 644 88 130 63 177 91 196 87 103 105 514 639 g 0 0 0 670 588 167 233 152 90 105 90 2819 82 2747 585 764 t 0 0 0 949 1170 146 2850 98 542 109 2997 140 3019 208 1324 880
MA1978.2_shift0 (ZNF354A)				; oligos_6nt_test_vs_ctrl_m2 versus MA1978.2 (ZNF354A); m=1/11; ncol2=20; w=-3; offset=-3; strand=D; shift=0; score=0.486706; wAAwtrTAAAtGrayw ; cor=; Ncor= a 277.0 736.0 682.0 385.0 223.0 574.0 115.0 845.0 845.0 791.0 196.0 115.0 304.0 466.0 142.0 277.0 c 115.0 88.0 142.0 142.0 196.0 88.0 115.0 7.0 34.0 88.0 34.0 34.0 115.0 196.0 520.0 142.0 g 61.0 7.0 34.0 196.0 142.0 277.0 34.0 115.0 61.0 61.0 196.0 845.0 466.0 196.0 34.0 142.0 t 547.0 169.0 142.0 277.0 439.0 61.0 736.0 34.0 61.0 61.0 574.0 7.0 115.0 142.0 304.0 439.0
MA2124.1_rc_shift3 (Hmga1_rc)				; oligos_6nt_test_vs_ctrl_m2 versus MA2124.1_rc (Hmga1_rc); m=2/11; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.462217; ---wTAAAAAT----- ; cor=; Ncor= a 0 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 0 0 0 c 0 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 0 0 0 g 0 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 0 0 0 t 0 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0 0 0 0
MA0108.3_shift4 (TBP)				; oligos_6nt_test_vs_ctrl_m2 versus MA0108.3 (TBP); m=3/11; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.457341; ----TATAWAw----- ; cor=; Ncor= a 0 0 0 0 16.0 352.0 3.0 354.0 268.0 360.0 222.0 0 0 0 0 0 c 0 0 0 0 46.0 0.0 10.0 0.0 0.0 3.0 2.0 0 0 0 0 0 g 0 0 0 0 18.0 2.0 2.0 5.0 0.0 20.0 44.0 0 0 0 0 0 t 0 0 0 0 309.0 35.0 374.0 30.0 121.0 6.0 121.0 0 0 0 0 0
MA1473.2_shift2 (CDX4)				; oligos_6nt_test_vs_ctrl_m2 versus MA1473.2 (CDX4); m=4/11; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.443485; --GymATAAAa----- ; cor=; Ncor= a 0 0 2533.0 0.0 12392.0 23367.0 0.0 23367.0 23367.0 23367.0 23367.0 0 0 0 0 0 c 0 0 1064.0 14682.0 10976.0 0.0 0.0 0.0 0.0 57.0 6493.0 0 0 0 0 0 g 0 0 23367.0 0.0 25.0 0.0 0.0 0.0 0.0 0.0 2168.0 0 0 0 0 0 t 0 0 98.0 8686.0 0.0 0.0 23367.0 0.0 0.0 0.0 4827.0 0 0 0 0 0
MA0899.2_shift2 (HOXA10)				; oligos_6nt_test_vs_ctrl_m2 versus MA0899.2 (HOXA10); m=5/11; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.431873; --gymATWAAa----- ; cor=; Ncor= a 0 0 2425.0 153.0 8381.0 8381.0 367.0 5960.0 8381.0 8381.0 8381.0 0 0 0 0 0 c 0 0 1757.0 3867.0 4516.0 455.0 11.0 84.0 36.0 568.0 2082.0 0 0 0 0 0 g 0 0 8381.0 59.0 1022.0 718.0 0.0 121.0 76.0 125.0 1560.0 0 0 0 0 0 t 0 0 1341.0 4515.0 957.0 267.0 8381.0 2422.0 384.0 331.0 2058.0 0 0 0 0 0
MA0650.4_shift2 (Hoxa13)				; oligos_6nt_test_vs_ctrl_m2 versus MA0650.4 (Hoxa13); m=6/11; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.429692; --CCAATAAA------ ; cor=; Ncor= a 0 0 1442.0 1273.0 14069.0 15410.0 105.0 15804.0 16813.0 16550.0 0 0 0 0 0 0 c 0 0 12600.0 14100.0 1594.0 243.0 249.0 205.0 125.0 306.0 0 0 0 0 0 0 g 0 0 1889.0 77.0 146.0 666.0 232.0 407.0 98.0 145.0 0 0 0 0 0 0 t 0 0 1317.0 1798.0 1439.0 929.0 16662.0 832.0 212.0 247.0 0 0 0 0 0 0
MA0465.3_shift2 (CDX2)				; oligos_6nt_test_vs_ctrl_m2 versus MA0465.3 (CDX2); m=7/11; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.426546; --GCAATAAA------ ; cor=; Ncor= a 0 0 3157.0 1226.0 26720.0 29957.0 274.0 29221.0 30645.0 30125.0 0 0 0 0 0 0 c 0 0 2096.0 26587.0 3312.0 414.0 391.0 761.0 349.0 595.0 0 0 0 0 0 0 g 0 0 24214.0 607.0 184.0 1196.0 386.0 999.0 366.0 502.0 0 0 0 0 0 0 t 0 0 2559.0 3606.0 1810.0 459.0 30975.0 1045.0 666.0 804.0 0 0 0 0 0 0
MA0909.4_shift3 (Hoxd13)				; oligos_6nt_test_vs_ctrl_m2 versus MA0909.4 (Hoxd13); m=8/11; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.424401; ---CAATAAA------ ; cor=; Ncor= a 0 0 0 16.0 5775.0 5923.0 0.0 5955.0 5923.0 4227.0 0 0 0 0 0 0 c 0 0 0 5866.0 5.0 13.0 2.0 4.0 37.0 704.0 0 0 0 0 0 0 g 0 0 0 34.0 148.0 11.0 3.0 7.0 2.0 379.0 0 0 0 0 0 0 t 0 0 0 61.0 49.0 30.0 5972.0 11.0 15.0 667.0 0 0 0 0 0 0
MA0913.3_shift2 (HOXD9)				; oligos_6nt_test_vs_ctrl_m2 versus MA0913.3 (HOXD9); m=9/11; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.420214; --GymATAAAA----- ; cor=; Ncor= a 0 0 1300.0 0.0 16363.0 16363.0 215.0 16363.0 16363.0 16363.0 16363.0 0 0 0 0 0 c 0 0 872.0 9773.0 8643.0 226.0 0.0 8.0 0.0 0.0 2202.0 0 0 0 0 0 g 0 0 16363.0 42.0 675.0 439.0 0.0 0.0 0.0 0.0 1216.0 0 0 0 0 0 t 0 0 655.0 6590.0 927.0 4.0 16363.0 5445.0 123.0 0.0 2194.0 0 0 0 0 0
MA0878.3_shift1 (CDX1)				; oligos_6nt_test_vs_ctrl_m2 versus MA0878.3 (CDX1); m=10/11; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.406964; -GGymATAAAA----- ; cor=; Ncor= a 0 1088.0 527.0 11.0 4822.0 8617.0 0.0 8617.0 8617.0 8617.0 7199.0 0 0 0 0 0 c 0 884.0 355.0 4868.0 3795.0 0.0 0.0 56.0 72.0 0.0 1418.0 0 0 0 0 0 g 0 7528.0 8090.0 0.0 0.0 344.0 0.0 0.0 97.0 0.0 754.0 0 0 0 0 0 t 0 1076.0 131.0 3749.0 355.0 0.0 8617.0 230.0 29.0 0.0 854.0 0 0 0 0 0
MA0635.2_shift6 (BARHL2)				; oligos_6nt_test_vs_ctrl_m2 versus MA0635.2 (BARHL2); m=11/11; ncol2=6; w=0; offset=3; strand=D; shift=6; score=0.401413; ------TAAAyG---- ; cor=; Ncor= a 0 0 0 0 0 0 643.0 12855.0 12855.0 12855.0 443.0 1570.0 0 0 0 0 c 0 0 0 0 0 0 0.0 0.0 0.0 116.0 12855.0 0.0 0 0 0 0 g 0 0 0 0 0 0 0.0 0.0 0.0 1086.0 127.0 12855.0 0 0 0 0 t 0 0 0 0 0 0 12855.0 1969.0 0.0 4032.0 7756.0 1335.0 0 0 0 0