position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'Top_500___promotor_(ZBTB24_vs._Empty)' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 500 Sum of sequence lengths 120587 Min sequence length 0 Max sequence length 961 Average sequence length 241 Possible positions 120587 Oligonucleotide statistics: Total occurrences 118824 Position interval parameters: Position interval 20 Number of windows 49 Total positions 120587 Degrees of freedom 48 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 1 1 2 -24 [-479,-460] -469.5 1 20 3 -23 [-459,-440] -449.5 1 20 4 -22 [-439,-420] -429.5 1 20 5 -21 [-419,-400] -409.5 2 25 6 -20 [-399,-380] -389.5 2 40 7 -19 [-379,-360] -369.5 3 59 8 -18 [-359,-340] -349.5 4 75 9 -17 [-339,-320] -329.5 6 101 10 -16 [-319,-300] -309.5 9 153 11 -15 [-299,-280] -289.5 13 216 12 -14 [-279,-260] -269.5 17 303 13 -13 [-259,-240] -249.5 22 414 14 -12 [-239,-220] -229.5 31 535 15 -11 [-219,-200] -209.5 45 760 16 -10 [-199,-180] -189.5 63 1056 17 -9 [-179,-160] -169.5 89 1588 18 -8 [-159,-140] -149.5 123 2113 19 -7 [-139,-120] -129.5 180 2991 20 -6 [-119,-100] -109.5 254 4375 21 -5 [-99,-80] -89.5 380 6319 22 -4 [-79,-60] -69.5 500 9355 23 -3 [-59,-40] -49.5 500 10000 24 -2 [-39,-20] -29.5 500 10000 25 -1 [-19,0] -9.5 500 10000 26 0 [1,20] 10.5 500 10000 27 1 [21,40] 30.5 500 10000 28 2 [41,60] 50.5 500 10000 29 3 [61,80] 70.5 500 9238 30 4 [81,100] 90.5 374 6197 31 5 [101,120] 110.5 249 4301 32 6 [121,140] 130.5 174 2933 33 7 [141,160] 150.5 120 2078 34 8 [161,180] 170.5 89 1565 35 9 [181,200] 190.5 62 1042 36 10 [201,220] 210.5 44 746 37 11 [221,240] 230.5 28 526 38 12 [241,260] 250.5 22 407 39 13 [261,280] 270.5 17 299 40 14 [281,300] 290.5 13 213 41 15 [301,320] 310.5 9 149 42 16 [321,340] 330.5 5 98 43 17 [341,360] 350.5 4 74 44 18 [361,380] 370.5 3 58 45 19 [381,400] 390.5 2 40 46 20 [401,420] 410.5 2 24 47 21 [421,440] 430.5 1 20 48 22 [441,460] 450.5 1 20 49 23 [461,480] 470.5 1 20 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 20242 | 115.0 | 48 | 2.0e-07 | 8e-07 | 6.10 | 1 | 0 | 2 | 5 | 1 | 4 | 10 | 9 | 10 | 14 | 32 | 53 | 62 | 91 | 105 | 176 | 191 | 292 | 376 | 560 | 818 | 1086 | 1563 | 1622 | 1596 | 1699 | 1657 | 1566 | 1605 | 1489 | 988 | 689 | 533 | 395 | 284 | 189 | 120 | 105 | 56 | 38 | 45 | 30 | 20 | 15 | 13 | 9 | 9 | 2 | 5 | 3 |
| g | g | 38992 | 72.5 | 48 | 1.3e-02 | 0.051 | 1.29 | 2 | 0 | 10 | 4 | 3 | 8 | 16 | 14 | 23 | 26 | 42 | 56 | 86 | 132 | 177 | 257 | 365 | 494 | 633 | 948 | 1456 | 2168 | 3069 | 3295 | 3204 | 3222 | 3332 | 3228 | 3331 | 2946 | 1982 | 1328 | 927 | 666 | 497 | 282 | 224 | 144 | 122 | 73 | 58 | 45 | 24 | 16 | 13 | 15 | 8 | 9 | 8 | 6 |
| c | c | 39489 | 69.1 | 48 | 2.4e-02 | 0.098 | 1.01 | 3 | 0 | 6 | 8 | 12 | 8 | 6 | 21 | 28 | 36 | 52 | 69 | 99 | 115 | 163 | 207 | 336 | 517 | 730 | 968 | 1361 | 2001 | 3079 | 3353 | 3370 | 3275 | 3152 | 3299 | 3226 | 3165 | 2025 | 1450 | 965 | 673 | 470 | 349 | 242 | 161 | 143 | 129 | 69 | 48 | 33 | 20 | 22 | 9 | 3 | 5 | 4 | 7 |
| t | t | 20101 | 52.9 | 48 | 2.9e-01 | 1.2 | -0.07 | 4 | 1 | 2 | 3 | 4 | 5 | 8 | 15 | 14 | 25 | 27 | 38 | 56 | 76 | 90 | 120 | 164 | 285 | 374 | 515 | 740 | 1012 | 1564 | 1605 | 1677 | 1614 | 1627 | 1689 | 1626 | 1454 | 1081 | 762 | 497 | 344 | 299 | 190 | 132 | 96 | 68 | 59 | 41 | 26 | 21 | 23 | 10 | 7 | 4 | 4 | 3 | 4 |
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