/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	24	48
		file1	2	22	47
		file1	3	21	92
		file1	4	17	80
		file1	5	13	175
		file1	6	13	441
		file1	7	20	40
		file1	8	11	252
		file1	9	12	195
		file1	10	12	111
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150529_2026-01-05.150529_HDOPDl/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		24		48
		file2		2		22		47
		file2		3		21		92
		file2		4		17		80
		file2		5		13		175
		file2		6		13		441
		file2		7		20		40
		file2		8		11		252
		file2		9		12		195
		file2		10		12		111
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 1.000 1.000 21 21 21 21 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 1.000 1.000 22 22 22 22 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 0.816 0.779 21 22 21 22 0.9545 1.0000 0.9545 D -1
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.816 0.779 22 21 21 22 0.9545 0.9545 1.0000 D 1
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.824 0.756 24 22 22 24 0.9167 0.9167 1.0000 R 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.824 0.756 22 24 22 24 0.9167 1.0000 0.9167 R -2
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 0.854 0.748 24 21 21 24 0.8750 0.8750 1.0000 R 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 0.854 0.748 21 24 21 24 0.8750 1.0000 0.8750 R -3
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 0.754 0.534 24 17 17 24 0.7083 0.7083 1.0000 R 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 0.754 0.534 17 24 17 24 0.7083 1.0000 0.7083 R -7
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 0.779 0.506 13 20 13 20 0.6500 1.0000 0.6500 D -7
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 0.779 0.506 20 13 13 20 0.6500 0.6500 1.0000 R 0
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 0.711 0.504 21 20 17 24 0.7083 0.8095 0.8500 D 4
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.711 0.504 20 21 17 24 0.7083 0.8500 0.8095 R 3
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 0.741 0.459 21 13 13 21 0.6190 0.6190 1.0000 R 4
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 0.741 0.459 13 21 13 21 0.6190 1.0000 0.6190 R -4
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 0.774 0.457 22 13 13 22 0.5909 0.5909 1.0000 R 5
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.774 0.457 13 22 13 22 0.5909 1.0000 0.5909 R -4
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 0.798 0.432 24 13 13 24 0.5417 0.5417 1.0000 D 3
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 0.798 0.432 13 24 13 24 0.5417 1.0000 0.5417 D -3 
 Host name	rsat
 Job started	2026-01-05.150600
 Job done	2026-01-05.150606
 Seconds	0.39
	user	0.39
	system	0.19
	cuser	4.92
;	csystem	0.77