position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'Top_500___distal_intergenic_(ZBTB24_vs._Empty)' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 500 Sum of sequence lengths 196878 Min sequence length 0 Max sequence length 1000 Average sequence length 393 Possible positions 196878 Oligonucleotide statistics: Total occurrences 66421 Position interval parameters: Position interval 20 Number of windows 50 Total positions 196878 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 35 673 2 -24 [-479,-460] -469.5 39 731 3 -23 [-459,-440] -449.5 43 824 4 -22 [-439,-420] -429.5 46 891 5 -21 [-419,-400] -409.5 54 1002 6 -20 [-399,-380] -389.5 60 1167 7 -19 [-379,-360] -369.5 71 1301 8 -18 [-359,-340] -349.5 76 1444 9 -17 [-339,-320] -329.5 89 1697 10 -16 [-319,-300] -309.5 96 1855 11 -15 [-299,-280] -289.5 104 1998 12 -14 [-279,-260] -269.5 119 2201 13 -13 [-259,-240] -249.5 143 2610 14 -12 [-239,-220] -229.5 163 3096 15 -11 [-219,-200] -209.5 183 3502 16 -10 [-199,-180] -189.5 199 3818 17 -9 [-179,-160] -169.5 225 4275 18 -8 [-159,-140] -149.5 275 5076 19 -7 [-139,-120] -129.5 316 5940 20 -6 [-119,-100] -109.5 372 6948 21 -5 [-99,-80] -89.5 427 8043 22 -4 [-79,-60] -69.5 500 9583 23 -3 [-59,-40] -49.5 500 10000 24 -2 [-39,-20] -29.5 500 10000 25 -1 [-19,0] -9.5 500 10000 26 0 [1,20] 10.5 500 10000 27 1 [21,40] 30.5 500 10000 28 2 [41,60] 50.5 500 10000 29 3 [61,80] 70.5 500 9522 30 4 [81,100] 90.5 427 7972 31 5 [101,120] 110.5 372 6892 32 6 [121,140] 130.5 316 5901 33 7 [141,160] 150.5 274 5026 34 8 [161,180] 170.5 224 4252 35 9 [181,200] 190.5 197 3801 36 10 [201,220] 210.5 182 3482 37 11 [221,240] 230.5 163 3076 38 12 [241,260] 250.5 141 2589 39 13 [261,280] 270.5 119 2187 40 14 [281,300] 290.5 103 1989 41 15 [301,320] 310.5 96 1848 42 16 [321,340] 330.5 89 1681 43 17 [341,360] 350.5 76 1443 44 18 [361,380] 370.5 71 1287 45 19 [381,400] 390.5 60 1159 46 20 [401,420] 410.5 54 994 47 21 [421,440] 430.5 46 887 48 22 [441,460] 450.5 43 818 49 23 [461,480] 470.5 39 727 50 24 [481,500] 490.5 35 670 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 16693 | 2032.8 | 49 | 0.0e+00 | 0 | 300 | 1 | 23 | 23 | 18 | 18 | 24 | 25 | 35 | 41 | 42 | 58 | 76 | 92 | 145 | 202 | 238 | 291 | 327 | 429 | 528 | 693 | 831 | 1058 | 1116 | 1106 | 1095 | 1142 | 1124 | 1107 | 985 | 761 | 599 | 491 | 426 | 329 | 230 | 208 | 157 | 141 | 88 | 92 | 75 | 42 | 35 | 31 | 24 | 8 | 15 | 12 | 6 | 31 |
| g | g | 17077 | 2029.3 | 49 | 0.0e+00 | 0 | 300 | 2 | 23 | 26 | 22 | 22 | 25 | 20 | 48 | 56 | 67 | 79 | 70 | 96 | 173 | 230 | 258 | 258 | 325 | 427 | 511 | 692 | 848 | 1099 | 1177 | 1172 | 1152 | 1123 | 1073 | 1096 | 1057 | 769 | 629 | 502 | 409 | 327 | 268 | 204 | 206 | 124 | 77 | 52 | 66 | 65 | 43 | 30 | 16 | 15 | 16 | 9 | 7 | 18 |
| a | a | 16610 | 1934.4 | 49 | 0.0e+00 | 0 | 300 | 3 | 29 | 16 | 35 | 24 | 24 | 23 | 34 | 45 | 55 | 79 | 74 | 84 | 175 | 206 | 245 | 244 | 320 | 424 | 560 | 683 | 862 | 1063 | 1129 | 1129 | 1067 | 1082 | 1028 | 1020 | 949 | 742 | 669 | 545 | 437 | 321 | 276 | 205 | 186 | 128 | 82 | 76 | 74 | 39 | 27 | 19 | 20 | 11 | 10 | 5 | 5 | 25 |
| t | t | 16041 | 1655.1 | 49 | 0.0e+00 | 0 | 300 | 4 | 35 | 35 | 35 | 42 | 26 | 29 | 49 | 40 | 60 | 68 | 68 | 87 | 169 | 201 | 248 | 263 | 311 | 413 | 480 | 689 | 841 | 1070 | 1033 | 1054 | 1038 | 960 | 960 | 970 | 965 | 742 | 627 | 511 | 431 | 311 | 230 | 218 | 183 | 113 | 81 | 88 | 57 | 52 | 49 | 36 | 16 | 6 | 7 | 8 | 9 | 27 |
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