position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'Top_500___distal_intergenic_(ZBTB24_vs._Empty)' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 500 Sum of sequence lengths 156785 Min sequence length 0 Max sequence length 1000 Average sequence length 313 Possible positions 156785 Oligonucleotide statistics: Total occurrences 138654 Position interval parameters: Position interval 20 Number of windows 50 Total positions 156785 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 15 276 2 -24 [-479,-460] -469.5 16 318 3 -23 [-459,-440] -449.5 20 347 4 -22 [-439,-420] -429.5 26 465 5 -21 [-419,-400] -409.5 30 568 6 -20 [-399,-380] -389.5 36 643 7 -19 [-379,-360] -369.5 39 749 8 -18 [-359,-340] -349.5 44 813 9 -17 [-339,-320] -329.5 49 918 10 -16 [-319,-300] -309.5 58 1056 11 -15 [-299,-280] -289.5 64 1221 12 -14 [-279,-260] -269.5 73 1359 13 -13 [-259,-240] -249.5 78 1485 14 -12 [-239,-220] -229.5 90 1653 15 -11 [-219,-200] -209.5 116 2128 16 -10 [-199,-180] -189.5 139 2543 17 -9 [-179,-160] -169.5 161 2995 18 -8 [-159,-140] -149.5 193 3574 19 -7 [-139,-120] -129.5 223 4117 20 -6 [-119,-100] -109.5 272 4955 21 -5 [-99,-80] -89.5 403 6773 22 -4 [-79,-60] -69.5 500 9674 23 -3 [-59,-40] -49.5 500 10000 24 -2 [-39,-20] -29.5 500 10000 25 -1 [-19,0] -9.5 500 10000 26 0 [1,20] 10.5 500 10000 27 1 [21,40] 30.5 500 10000 28 2 [41,60] 50.5 500 10000 29 3 [61,80] 70.5 500 9577 30 4 [81,100] 90.5 398 6646 31 5 [101,120] 110.5 266 4901 32 6 [121,140] 130.5 219 4092 33 7 [141,160] 150.5 191 3534 34 8 [161,180] 170.5 159 2972 35 9 [181,200] 190.5 137 2523 36 10 [201,220] 210.5 116 2103 37 11 [221,240] 230.5 88 1643 38 12 [241,260] 250.5 77 1484 39 13 [261,280] 270.5 73 1356 40 14 [281,300] 290.5 64 1214 41 15 [301,320] 310.5 56 1044 42 16 [321,340] 330.5 49 914 43 17 [341,360] 350.5 44 811 44 18 [361,380] 370.5 39 744 45 19 [381,400] 390.5 34 635 46 20 [401,420] 410.5 29 564 47 21 [421,440] 430.5 26 461 48 22 [441,460] 450.5 20 346 49 23 [461,480] 470.5 16 316 50 24 [481,500] 490.5 15 275 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 32885 | 286.9 | 49 | 2.3e-35 | 9.1e-35 | 34.04 | 1 | 57 | 60 | 62 | 78 | 116 | 128 | 159 | 162 | 174 | 174 | 198 | 211 | 244 | 281 | 379 | 446 | 549 | 690 | 866 | 1015 | 1504 | 2192 | 2274 | 2204 | 2198 | 2150 | 2151 | 2086 | 2207 | 1515 | 1083 | 907 | 756 | 619 | 525 | 405 | 257 | 254 | 219 | 240 | 178 | 165 | 159 | 140 | 114 | 101 | 63 | 58 | 58 | 54 |
| g | g | 31966 | 279.6 | 49 | 4.9e-34 | 2e-33 | 32.71 | 2 | 50 | 46 | 52 | 84 | 101 | 120 | 138 | 158 | 145 | 160 | 232 | 234 | 264 | 256 | 355 | 506 | 617 | 727 | 813 | 1080 | 1496 | 2238 | 2125 | 2081 | 2060 | 2157 | 2091 | 2151 | 2056 | 1404 | 993 | 844 | 743 | 589 | 483 | 373 | 271 | 237 | 216 | 171 | 166 | 144 | 158 | 115 | 110 | 113 | 87 | 54 | 61 | 41 |
| t | t | 37176 | 129.6 | 49 | 3.3e-09 | 1.3e-08 | 7.88 | 3 | 59 | 72 | 66 | 125 | 116 | 164 | 166 | 197 | 222 | 246 | 283 | 296 | 318 | 359 | 441 | 521 | 620 | 801 | 916 | 1185 | 1639 | 2302 | 2444 | 2473 | 2585 | 2443 | 2475 | 2491 | 2299 | 1557 | 1089 | 928 | 804 | 666 | 532 | 476 | 368 | 357 | 321 | 268 | 264 | 243 | 202 | 170 | 165 | 137 | 85 | 85 | 67 | 68 |
| a | a | 36627 | 110.1 | 49 | 1.4e-06 | 5.5e-06 | 5.26 | 4 | 49 | 60 | 87 | 117 | 157 | 150 | 182 | 193 | 228 | 286 | 272 | 330 | 328 | 350 | 427 | 579 | 723 | 875 | 955 | 1090 | 1544 | 2299 | 2471 | 2520 | 2350 | 2391 | 2388 | 2403 | 2204 | 1480 | 1121 | 918 | 768 | 640 | 545 | 458 | 371 | 304 | 311 | 298 | 237 | 211 | 172 | 199 | 134 | 108 | 120 | 79 | 73 | 72 |
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