/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	23	57
		file1	2	18	78
		file1	3	22	28
		file1	4	24	126
		file1	5	16	174
		file1	6	12	101
		file1	7	16	154
		file1	8	11	201
		file1	9	14	326
		file1	10	12	112
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150634_2026-01-05.150634_YIpuAE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		23		57
		file2		2		18		78
		file2		3		22		28
		file2		4		24		126
		file2		5		16		174
		file2		6		12		101
		file2		7		16		154
		file2		8		11		201
		file2		9		14		326
		file2		10		12		112
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 1.000 1.000 23 23 23 23 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 1.000 1.000 22 22 22 22 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.858 0.702 18 22 18 22 0.8182 1.0000 0.8182 R -4
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 0.858 0.702 22 18 18 22 0.8182 0.8182 1.0000 R 0
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m4 0.797 0.697 16 14 14 16 0.8750 0.8750 1.0000 D 2
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 0.797 0.697 14 16 14 16 0.8750 1.0000 0.8750 D -2
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 0.726 0.694 23 22 22 23 0.9565 0.9565 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 0.726 0.694 22 23 22 23 0.9565 1.0000 0.9565 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.766 0.600 23 18 18 23 0.7826 0.7826 1.0000 R 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.766 0.600 18 23 18 23 0.7826 1.0000 0.7826 R -5
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 0.853 0.593 16 23 16 23 0.6957 1.0000 0.6957 D -7
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 0.853 0.593 23 16 16 23 0.6957 0.6957 1.0000 D 7
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 0.815 0.543 24 16 16 24 0.6667 0.6667 1.0000 D 1
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m4 0.815 0.543 16 24 16 24 0.6667 1.0000 0.6667 D -1
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 0.867 0.528 14 23 14 23 0.6087 1.0000 0.6087 D -7
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 0.867 0.528 23 14 14 23 0.6087 0.6087 1.0000 D 7
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 0.908 0.514 23 24 17 30 0.5667 0.7391 0.7083 D 6
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 0.908 0.514 24 23 17 30 0.5667 0.7083 0.7391 D -6
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 0.869 0.507 14 24 14 24 0.5833 1.0000 0.5833 D 0
oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 0.869 0.507 24 14 14 24 0.5833 0.5833 1.0000 D 0 
 Host name	rsat
 Job started	2026-01-05.150714
 Job done	2026-01-05.150720
 Seconds	0.4
	user	0.4
	system	0.17
	cuser	4.98
;	csystem	0.81