position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150933_2026-01-05.150933_rtRXPK/data/sequences/peak-motifs_ctrl_maxlen1000_top100_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'Top_100___promotor_(ZBTB24_vs._Empty)' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150933_2026-01-05.150933_rtRXPK/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150933_2026-01-05.150933_rtRXPK/data/sequences/peak-motifs_ctrl_maxlen1000_top100_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150933_2026-01-05.150933_rtRXPK/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 100 Sum of sequence lengths 23210 Min sequence length 0 Max sequence length 570 Average sequence length 232 Possible positions 23210 Sequences: # length ID 1 234 chr19:42817865-42818099 2 166 chr19:44455441-44455607 3 360 chr19:45999564-45999924 4 355 chr19:47291769-47292124 5 465 chr19:47975250-47975715 6 278 chr19:47987280-47987558 7 145 chr19:48867622-48867767 8 146 chr19:49623371-49623517 9 168 chr19:49652707-49652875 10 269 chr19:50083677-50083946 11 164 chr19:52642652-52642816 12 151 chr19:55657690-55657841 13 419 chr19:55691367-55691786 14 174 chr19:55897210-55897384 15 260 chr19:55919117-55919377 16 149 chr19:56110676-56110825 17 182 chr19:57791220-57791402 18 158 chr19:58838792-58838950 19 149 chr19:59050964-59051113 20 165 chr2:677230-677395 21 147 chr2:10184166-10184313 22 341 chr2:25565299-25565640 23 308 chr2:30142986-30143294 24 141 chr2:38978425-38978566 25 147 chr2:43823265-43823412 26 197 chr2:44589007-44589204 27 269 chr2:70121005-70121274 28 205 chr2:70528974-70529179 29 148 chr2:74425671-74425819 30 302 chr2:85581575-85581877 31 259 chr2:114647414-114647673 32 229 chr2:136633955-136634184 33 183 chr2:152266709-152266892 34 420 chr2:174219194-174219614 35 167 chr2:191399317-191399484 36 177 chr2:196521785-196521962 37 143 chr2:198175355-198175498 38 406 chr2:198380599-198381005 39 188 chr2:200321003-200321191 40 214 chr2:215275688-215275902 41 349 chr2:217236889-217237238 42 197 chr2:219134635-219134832 43 403 chr2:219432897-219433300 44 535 chr2:220172883-220173418 45 189 chr2:220196417-220196606 46 323 chr2:220408661-220408984 47 166 chr2:224466997-224467163 48 179 chr2:242295084-242295263 49 173 chr20:362620-362793 50 349 chr20:5099892-5100241 51 278 chr20:5892280-5892558 52 173 chr20:10015761-10015934 53 165 chr20:25061682-25061847 54 146 chr20:25227963-25228109 55 151 chr20:30192101-30192252 56 150 chr20:35807566-35807716 57 334 chr20:42876813-42877147 58 219 chr20:42893094-42893313 59 158 chr20:44563658-44563816 60 243 chr20:44658151-44658394 61 211 chr20:48099312-48099523 62 143 chr20:48806569-48806712 63 148 chr20:55926359-55926507 64 184 chr20:60795374-60795558 65 234 chr20:62284624-62284858 66 224 chr20:62573392-62573616 67 140 chr22:21922075-21922215 68 163 chr22:26879889-26880052 69 180 chr22:29664345-29664525 70 229 chr22:31198818-31199047 71 294 chr22:31364856-31365150 72 147 chr22:31477228-31477375 73 254 chr22:35653420-35653674 74 301 chr22:35795858-35796159 75 138 chr22:36902949-36903087 76 188 chr22:37099567-37099755 77 168 chr22:41864861-41865029 78 138 chr22:43010761-43010899 79 356 chr22:50709180-50709536 80 161 chr22:50913268-50913429 81 570 chr22:51038349-51038919 82 518 chr3:9593710-9594228 83 266 chr3:12883074-12883340 84 374 chr3:42742926-42743300 85 158 chr3:47844700-47844858 86 149 chr3:48342762-48342911 87 143 chr3:49507244-49507387 88 401 chr3:49591960-49592361 89 358 chr3:50396791-50397149 90 145 chr3:53195276-53195421 91 180 chr3:62305030-62305210 92 179 chr3:101280739-101280918 93 246 chr3:112012752-112012998 94 183 chr3:113897687-113897870 95 137 chr1:144932386-144932523 96 157 chr3:120626969-120627126 97 286 chr3:131753885-131754171 98 174 chr1:145969453-145969627 99 146 chr3:139062806-139062952 100 411 chr3:187387272-187387683 Oligonucleotide statistics: Total occurrences 22706 Position interval parameters: Position interval 20 Number of windows 30 Total positions 23210 Degrees of freedom 29 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -15 [-299,-280] -289.5 1 6 2 -14 [-279,-260] -269.5 2 28 3 -13 [-259,-240] -249.5 3 60 4 -12 [-239,-220] -229.5 4 73 5 -11 [-219,-200] -209.5 10 113 6 -10 [-199,-180] -189.5 11 208 7 -9 [-179,-160] -169.5 20 347 8 -8 [-159,-140] -149.5 25 449 9 -7 [-139,-120] -129.5 35 618 10 -6 [-119,-100] -109.5 44 805 11 -5 [-99,-80] -89.5 72 1119 12 -4 [-79,-60] -69.5 100 1836 13 -3 [-59,-40] -49.5 100 2000 14 -2 [-39,-20] -29.5 100 2000 15 -1 [-19,0] -9.5 100 2000 16 0 [1,20] 10.5 100 2000 17 1 [21,40] 30.5 100 2000 18 2 [41,60] 50.5 100 2000 19 3 [61,80] 70.5 100 1802 20 4 [81,100] 90.5 71 1094 21 5 [101,120] 110.5 44 794 22 6 [121,140] 130.5 35 604 23 7 [141,160] 150.5 25 442 24 8 [161,180] 170.5 20 338 25 9 [181,200] 190.5 11 206 26 10 [201,220] 210.5 9 107 27 11 [221,240] 230.5 4 72 28 12 [241,260] 250.5 3 58 29 13 [261,280] 270.5 2 27 30 14 [281,300] 290.5 1 4 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -289.5 occurrences in window 1 [-299,-280] 11 -269.5 occurrences in window 2 [-279,-260] 12 -249.5 occurrences in window 3 [-259,-240] 13 -229.5 occurrences in window 4 [-239,-220] 14 -209.5 occurrences in window 5 [-219,-200] 15 -189.5 occurrences in window 6 [-199,-180] 16 -169.5 occurrences in window 7 [-179,-160] 17 -149.5 occurrences in window 8 [-159,-140] 18 -129.5 occurrences in window 9 [-139,-120] 19 -109.5 occurrences in window 10 [-119,-100] 20 -89.5 occurrences in window 11 [-99,-80] 21 -69.5 occurrences in window 12 [-79,-60] 22 -49.5 occurrences in window 13 [-59,-40] 23 -29.5 occurrences in window 14 [-39,-20] 24 -9.5 occurrences in window 15 [-19,0] 25 10.5 occurrences in window 16 [1,20] 26 30.5 occurrences in window 17 [21,40] 27 50.5 occurrences in window 18 [41,60] 28 70.5 occurrences in window 19 [61,80] 29 90.5 occurrences in window 20 [81,100] 30 110.5 occurrences in window 21 [101,120] 31 130.5 occurrences in window 22 [121,140] 32 150.5 occurrences in window 23 [141,160] 33 170.5 occurrences in window 24 [161,180] 34 190.5 occurrences in window 25 [181,200] 35 210.5 occurrences in window 26 [201,220] 36 230.5 occurrences in window 27 [221,240] 37 250.5 occurrences in window 28 [241,260] 38 270.5 occurrences in window 29 [261,280] 39 290.5 occurrences in window 30 [281,300]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 7504 | 46.0 | 29 | 2.4e-02 | 0.094 | 1.02 | 1 | 4 | 12 | 21 | 25 | 29 | 77 | 123 | 165 | 207 | 263 | 352 | 590 | 684 | 662 | 637 | 592 | 643 | 656 | 573 | 308 | 239 | 204 | 152 | 96 | 83 | 32 | 25 | 31 | 17 | 2 |
| a | a | 3820 | 40.0 | 29 | 8.4e-02 | 0.33 | 0.48 | 2 | 0 | 7 | 17 | 18 | 32 | 28 | 65 | 81 | 122 | 149 | 198 | 302 | 320 | 304 | 326 | 330 | 300 | 313 | 281 | 178 | 135 | 98 | 78 | 59 | 38 | 19 | 17 | 5 | 0 | 0 |
| g | g | 7585 | 24.8 | 29 | 6.9e-01 | 2.7 | -0.44 | 3 | 0 | 6 | 8 | 21 | 36 | 66 | 98 | 128 | 194 | 258 | 381 | 625 | 656 | 665 | 636 | 681 | 661 | 643 | 578 | 378 | 262 | 198 | 149 | 122 | 58 | 36 | 21 | 12 | 6 | 2 |
| t | t | 3797 | 16.7 | 29 | 9.7e-01 | 3.9 | -0.59 | 4 | 2 | 3 | 14 | 9 | 16 | 37 | 61 | 75 | 95 | 135 | 188 | 319 | 316 | 316 | 324 | 317 | 320 | 308 | 297 | 201 | 146 | 104 | 63 | 61 | 27 | 20 | 9 | 10 | 4 | 0 |
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