position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150933_2026-01-05.150933_rtRXPK/data/sequences/peak-motifs_test_maxlen1000_top100_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'Top_100___promotor_(ZBTB24_vs._Empty)' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150933_2026-01-05.150933_rtRXPK/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150933_2026-01-05.150933_rtRXPK/data/sequences/peak-motifs_test_maxlen1000_top100_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150933_2026-01-05.150933_rtRXPK/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 100 Sum of sequence lengths 32145 Min sequence length 0 Max sequence length 1000 Average sequence length 321 Possible positions 32145 Sequences: # length ID 1 150 chr3:37035028-37035178 2 149 chr3:43732821-43732970 3 476 chr3:45430154-45430630 4 185 chr3:49977581-49977766 5 204 chr3:50306399-50306603 6 258 chr3:50307278-50307536 7 417 chr3:50359000-50359417 8 157 chr3:50374316-50374473 9 579 chr3:52739774-52740353 10 1000 chr3:52865347-52866402 11 474 chr3:87275825-87276299 12 304 chr3:87276475-87276779 13 440 chr3:98312622-98313062 14 250 chr3:98450847-98451097 15 213 chr3:121263950-121264163 16 202 chr3:121264984-121265186 17 299 chr3:122786716-122787015 18 306 chr3:124605344-124605650 19 389 chr3:124606107-124606496 20 601 chr3:126194146-126194747 21 450 chr3:127540372-127540822 22 153 chr3:127769949-127770102 23 168 chr3:127770316-127770484 24 292 chr3:128445113-128445405 25 454 chr3:130745063-130745517 26 390 chr3:132036305-132036695 27 162 chr3:132378260-132378422 28 428 chr3:132378941-132379369 29 146 chr3:135684194-135684340 30 477 chr3:141594512-141594989 31 167 chr1:11866268-11866435 32 287 chr3:149530530-149530817 33 363 chr3:149531069-149531432 34 331 chr3:168864802-168865133 35 279 chr3:169381094-169381373 36 149 chr3:169490604-169490753 37 418 chr3:169684190-169684608 38 560 chr3:171528020-171528580 39 173 chr3:171757585-171757758 40 218 chr1:156783682-156783900 41 290 chr3:185960127-185960417 42 304 chr3:197026043-197026347 43 155 chr4:11430362-11430517 44 213 chr4:17578424-17578637 45 194 chr4:17579467-17579661 46 256 chr4:36246234-36246490 47 294 chr4:39367805-39368099 48 148 chr4:41361340-41361488 49 209 chr4:41362082-41362291 50 317 chr1:161719654-161719971 51 986 chr4:54456745-54457731 52 379 chr4:68566407-68566786 53 622 chr4:72051950-72052572 54 181 chr4:113206372-113206553 55 341 chr4:113218179-113218520 56 167 chr4:129730653-129730820 57 164 chr4:140587041-140587205 58 285 chr4:148653012-148653297 59 460 chr4:148653892-148654352 60 201 chr1:169763845-169764046 61 145 chr4:159689781-159689926 62 197 chr1:169862872-169863069 63 306 chr1:169863580-169863886 64 176 chr1:170043542-170043718 65 1000 chr4:166246606-166248627 66 482 chr4:166793798-166794280 67 500 chr4:166794489-166794989 68 367 chr4:166795207-166795574 69 440 chr4:178363217-178363657 70 308 chr4:178363926-178364234 71 171 chr5:32444481-32444652 72 523 chr1:173683974-173684497 73 159 chr5:36606771-36606930 74 428 chr5:54830708-54831136 75 515 chr5:61699190-61699705 76 250 chr5:64778681-64778931 77 193 chr5:66055499-66055692 78 693 chr5:66299673-66300366 79 299 chr1:179262877-179263176 80 272 chr5:88080598-88080870 81 162 chr5:88179533-88179695 82 156 chr5:88179842-88179998 83 151 chr5:88180211-88180362 84 159 chr5:112849433-112849592 85 184 chr5:128431011-128431195 86 175 chr5:133450072-133450247 87 453 chr5:133702476-133702929 88 383 chr5:133706330-133706713 89 170 chr5:135700888-135701058 90 369 chr5:137368882-137369251 91 160 chr5:141348720-141348880 92 468 chr5:149866085-149866553 93 688 chr5:150080402-150081090 94 223 chr5:162887113-162887336 95 159 chr5:162931490-162931649 96 632 chr1:186343707-186344339 97 215 chr5:171615487-171615702 98 151 chr1:186344643-186344794 99 218 chr5:172385565-172385783 100 161 chr5:175395401-175395562 Oligonucleotide statistics: Total occurrences 31951 Position interval parameters: Position interval 20 Number of windows 50 Total positions 32145 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 3 54 2 -24 [-479,-460] -469.5 3 60 3 -23 [-459,-440] -449.5 3 60 4 -22 [-439,-420] -429.5 3 60 5 -21 [-419,-400] -409.5 3 60 6 -20 [-399,-380] -389.5 3 60 7 -19 [-379,-360] -369.5 3 60 8 -18 [-359,-340] -349.5 5 71 9 -17 [-339,-320] -329.5 5 100 10 -16 [-319,-300] -309.5 8 129 11 -15 [-299,-280] -289.5 9 170 12 -14 [-279,-260] -269.5 11 202 13 -13 [-259,-240] -249.5 14 250 14 -12 [-239,-220] -229.5 22 380 15 -11 [-219,-200] -209.5 28 527 16 -10 [-199,-180] -189.5 35 624 17 -9 [-179,-160] -169.5 37 717 18 -8 [-159,-140] -149.5 50 872 19 -7 [-139,-120] -129.5 56 1066 20 -6 [-119,-100] -109.5 66 1184 21 -5 [-99,-80] -89.5 84 1464 22 -4 [-79,-60] -69.5 100 1951 23 -3 [-59,-40] -49.5 100 2000 24 -2 [-39,-20] -29.5 100 2000 25 -1 [-19,0] -9.5 100 2000 26 0 [1,20] 10.5 100 2000 27 1 [21,40] 30.5 100 2000 28 2 [41,60] 50.5 100 2000 29 3 [61,80] 70.5 100 1936 30 4 [81,100] 90.5 81 1446 31 5 [101,120] 110.5 64 1172 32 6 [121,140] 130.5 56 1059 33 7 [141,160] 150.5 50 859 34 8 [161,180] 170.5 37 715 35 9 [181,200] 190.5 35 616 36 10 [201,220] 210.5 28 524 37 11 [221,240] 230.5 22 372 38 12 [241,260] 250.5 13 247 39 13 [261,280] 270.5 11 201 40 14 [281,300] 290.5 9 169 41 15 [301,320] 310.5 7 126 42 16 [321,340] 330.5 5 100 43 17 [341,360] 350.5 5 70 44 18 [361,380] 370.5 3 60 45 19 [381,400] 390.5 3 60 46 20 [401,420] 410.5 3 60 47 21 [421,440] 430.5 3 60 48 22 [441,460] 450.5 3 60 49 23 [461,480] 470.5 3 60 50 24 [481,500] 490.5 3 52 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 6702 | 97.4 | 49 | 4.7e-05 | 0.00019 | 3.72 | 1 | 8 | 19 | 22 | 23 | 24 | 17 | 19 | 20 | 21 | 41 | 43 | 54 | 51 | 81 | 107 | 127 | 158 | 196 | 239 | 225 | 292 | 397 | 445 | 418 | 402 | 409 | 435 | 417 | 388 | 291 | 252 | 200 | 137 | 144 | 136 | 104 | 66 | 46 | 22 | 31 | 38 | 26 | 16 | 15 | 15 | 14 | 13 | 10 | 19 | 9 |
| c | c | 9284 | 71.0 | 49 | 2.2e-02 | 0.087 | 1.06 | 2 | 12 | 13 | 11 | 13 | 8 | 13 | 7 | 14 | 33 | 28 | 41 | 53 | 76 | 102 | 164 | 154 | 189 | 252 | 270 | 353 | 431 | 560 | 586 | 532 | 587 | 612 | 583 | 583 | 577 | 435 | 372 | 306 | 265 | 224 | 173 | 148 | 105 | 84 | 64 | 45 | 35 | 21 | 19 | 12 | 13 | 19 | 31 | 22 | 20 | 14 |
| t | t | 6563 | 67.4 | 49 | 4.2e-02 | 0.17 | 0.78 | 3 | 17 | 12 | 14 | 6 | 14 | 16 | 15 | 20 | 16 | 24 | 36 | 40 | 58 | 95 | 102 | 142 | 141 | 159 | 236 | 242 | 273 | 412 | 374 | 430 | 440 | 396 | 422 | 384 | 390 | 285 | 213 | 234 | 205 | 150 | 113 | 107 | 80 | 33 | 47 | 30 | 25 | 26 | 17 | 18 | 13 | 8 | 4 | 8 | 9 | 12 |
| g | g | 9402 | 35.3 | 49 | 9.3e-01 | 3.7 | -0.57 | 4 | 17 | 16 | 13 | 18 | 14 | 14 | 19 | 17 | 30 | 36 | 50 | 55 | 65 | 102 | 154 | 201 | 229 | 265 | 321 | 364 | 468 | 582 | 595 | 620 | 571 | 583 | 544 | 596 | 561 | 422 | 335 | 319 | 252 | 181 | 174 | 145 | 103 | 70 | 48 | 46 | 28 | 27 | 18 | 15 | 19 | 19 | 12 | 20 | 12 | 17 |
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