position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150947_2026-01-05.150947_WkkC55/data/sequences/peak-motifs_ctrl_maxlen1000_top100_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'Top_100___distal_intergenic_(ZBTB24_vs._Empty)' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150947_2026-01-05.150947_WkkC55/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150947_2026-01-05.150947_WkkC55/data/sequences/peak-motifs_ctrl_maxlen1000_top100_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150947_2026-01-05.150947_WkkC55/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 100 Sum of sequence lengths 39048 Min sequence length 0 Max sequence length 1000 Average sequence length 390 Possible positions 39048 Sequences: # length ID 1 219 chr19:46728943-46729162 2 206 chr1:120834520-120834726 3 511 chr1:121351910-121352421 4 512 chr19:51925286-51925798 5 468 chr1:121353529-121353997 6 343 chr19:55028697-55029040 7 157 chr19:55195865-55196022 8 237 chr1:121354207-121354444 9 439 chr19:55983505-55983944 10 347 chr1:121354899-121355246 11 152 chr1:121356223-121356375 12 609 chr2:3184308-3184917 13 343 chr1:121357787-121358130 14 145 chr2:44243518-44243663 15 230 chr1:121359938-121360168 16 322 chr2:73110522-73110844 17 207 chr2:87623823-87624030 18 399 chr2:87641783-87642182 19 213 chr2:87642529-87642742 20 352 chr2:87644280-87644632 21 467 chr2:87656099-87656566 22 539 chr1:121362832-121363371 23 198 chr1:4204549-4204747 24 674 chr1:121366801-121367475 25 259 chr2:92269373-92269632 26 492 chr2:92272943-92273435 27 170 chr2:92276564-92276734 28 220 chr2:92281293-92281513 29 184 chr1:121405157-121405341 30 417 chr2:92284312-92284729 31 1000 chr2:92289951-92291573 32 489 chr2:92296051-92296540 33 797 chr2:92296754-92297551 34 181 chr2:92297915-92298096 35 597 chr2:92300617-92301214 36 510 chr2:92305637-92306147 37 813 chr2:92306743-92307556 38 527 chr2:92307755-92308282 39 1000 chr2:92308440-92309793 40 151 chr1:121430377-121430528 41 368 chr2:92309999-92310367 42 253 chr2:92310557-92310810 43 1000 chr2:92312007-92313523 44 246 chr2:92313789-92314035 45 1000 chr2:92315231-92316776 46 1000 chr2:92317817-92319450 47 932 chr2:92319830-92320762 48 140 chr2:92321057-92321197 49 221 chr2:92321656-92321877 50 527 chr2:92322744-92323271 51 147 chr1:121452588-121452735 52 309 chr2:92323577-92323886 53 1000 chr2:92324107-92325266 54 607 chr2:92325462-92326069 55 409 chr2:119864029-119864438 56 138 chr1:121468064-121468202 57 203 chr2:137285310-137285513 58 424 chr1:121478635-121479059 59 1000 chr1:121484073-121485367 60 153 chr2:219862727-219862880 61 308 chr2:219910686-219910994 62 238 chr2:220719717-220719955 63 185 chr1:142535751-142535936 64 185 chr20:4045244-4045429 65 874 chr1:142537582-142538456 66 331 chr20:5380846-5381177 67 254 chr1:142538746-142539000 68 294 chr20:26265400-26265694 69 166 chr20:26273739-26273905 70 263 chr20:26304322-26304585 71 447 chr20:26314125-26314572 72 288 chr20:26318229-26318517 73 211 chr20:29811942-29812153 74 155 chr1:142546078-142546233 75 192 chr20:29823154-29823346 76 285 chr20:29829430-29829715 77 224 chr20:36201395-36201619 78 137 chr1:142569200-142569337 79 407 chr20:36255232-36255639 80 252 chr20:37309305-37309557 81 492 chr20:37314511-37315003 82 532 chr20:37321049-37321581 83 185 chr20:45152768-45152953 84 366 chr20:56623188-56623554 85 186 chr20:57717301-57717487 86 243 chr20:62763697-62763940 87 741 chr20:62958513-62959254 88 175 chr1:142911121-142911296 89 460 chr1:142967244-142967704 90 674 chr21:10702144-10702818 91 215 chr21:10712466-10712681 92 499 chr21:10717382-10717881 93 422 chr21:10718033-10718455 94 217 chr21:10719412-10719629 95 246 chr21:10727205-10727451 96 181 chr21:10764922-10765103 97 138 chr21:10765859-10765997 98 658 chr21:10772837-10773495 99 390 chr21:10778855-10779245 100 159 chr21:10791192-10791351 Oligonucleotide statistics: Total occurrences 14449 Position interval parameters: Position interval 20 Number of windows 50 Total positions 39048 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 7 140 2 -24 [-479,-460] -469.5 8 146 3 -23 [-459,-440] -449.5 8 160 4 -22 [-439,-420] -429.5 9 178 5 -21 [-419,-400] -409.5 10 187 6 -20 [-399,-380] -389.5 11 219 7 -19 [-379,-360] -369.5 12 231 8 -18 [-359,-340] -349.5 12 240 9 -17 [-339,-320] -329.5 15 286 10 -16 [-319,-300] -309.5 17 309 11 -15 [-299,-280] -289.5 18 359 12 -14 [-279,-260] -269.5 22 384 13 -13 [-259,-240] -249.5 29 515 14 -12 [-239,-220] -229.5 33 622 15 -11 [-219,-200] -209.5 39 722 16 -10 [-199,-180] -189.5 43 824 17 -9 [-179,-160] -169.5 49 922 18 -8 [-159,-140] -149.5 54 1024 19 -7 [-139,-120] -129.5 62 1133 20 -6 [-119,-100] -109.5 76 1378 21 -5 [-99,-80] -89.5 88 1661 22 -4 [-79,-60] -69.5 100 1932 23 -3 [-59,-40] -49.5 100 2000 24 -2 [-39,-20] -29.5 100 2000 25 -1 [-19,0] -9.5 100 2000 26 0 [1,20] 10.5 100 2000 27 1 [21,40] 30.5 100 2000 28 2 [41,60] 50.5 100 2000 29 3 [61,80] 70.5 100 1920 30 4 [81,100] 90.5 88 1647 31 5 [101,120] 110.5 76 1363 32 6 [121,140] 130.5 62 1123 33 7 [141,160] 150.5 54 1020 34 8 [161,180] 170.5 48 916 35 9 [181,200] 190.5 43 819 36 10 [201,220] 210.5 39 716 37 11 [221,240] 230.5 33 620 38 12 [241,260] 250.5 29 510 39 13 [261,280] 270.5 22 381 40 14 [281,300] 290.5 18 358 41 15 [301,320] 310.5 17 307 42 16 [321,340] 330.5 15 280 43 17 [341,360] 350.5 12 240 44 18 [361,380] 370.5 12 230 45 19 [381,400] 390.5 11 218 46 20 [401,420] 410.5 10 186 47 21 [421,440] 430.5 9 176 48 22 [441,460] 450.5 8 160 49 23 [461,480] 470.5 8 146 50 24 [481,500] 490.5 7 140 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 3828 | 399.3 | 49 | 2.0e-56 | 8e-56 | 55.10 | 1 | 19 | 7 | 15 | 10 | 8 | 10 | 25 | 24 | 24 | 24 | 17 | 25 | 51 | 65 | 47 | 54 | 68 | 110 | 128 | 149 | 224 | 273 | 267 | 271 | 258 | 234 | 231 | 221 | 201 | 138 | 129 | 96 | 87 | 61 | 60 | 36 | 30 | 22 | 9 | 11 | 18 | 13 | 10 | 6 | 15 | 7 | 5 | 0 | 2 | 13 |
| t | t | 3853 | 311.6 | 49 | 6.7e-40 | 2.7e-39 | 38.57 | 2 | 8 | 17 | 15 | 21 | 4 | 18 | 24 | 24 | 32 | 24 | 20 | 25 | 57 | 62 | 86 | 53 | 87 | 104 | 103 | 159 | 213 | 240 | 264 | 264 | 239 | 217 | 227 | 221 | 205 | 170 | 126 | 114 | 77 | 65 | 45 | 44 | 36 | 16 | 19 | 19 | 15 | 24 | 17 | 12 | 8 | 3 | 1 | 0 | 1 | 8 |
| c | c | 3423 | 287.2 | 49 | 2.0e-35 | 7.9e-35 | 34.10 | 3 | 6 | 9 | 6 | 5 | 3 | 9 | 19 | 20 | 13 | 17 | 18 | 27 | 46 | 55 | 43 | 72 | 80 | 112 | 92 | 131 | 175 | 226 | 196 | 213 | 215 | 213 | 202 | 212 | 202 | 161 | 117 | 100 | 91 | 78 | 61 | 44 | 23 | 20 | 11 | 17 | 19 | 17 | 8 | 4 | 4 | 1 | 1 | 0 | 2 | 7 |
| g | g | 3345 | 243.0 | 49 | 1.6e-27 | 6.5e-27 | 26.19 | 4 | 7 | 7 | 7 | 8 | 5 | 9 | 23 | 24 | 23 | 21 | 16 | 19 | 40 | 51 | 62 | 58 | 57 | 79 | 75 | 124 | 176 | 227 | 232 | 202 | 224 | 208 | 206 | 211 | 180 | 135 | 96 | 76 | 79 | 76 | 48 | 38 | 43 | 24 | 17 | 13 | 16 | 24 | 21 | 17 | 11 | 9 | 9 | 0 | 2 | 10 |
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