position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150947_2026-01-05.150947_WkkC55/data/sequences/peak-motifs_test_maxlen1000_top100_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'Top_100___distal_intergenic_(ZBTB24_vs._Empty)' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150947_2026-01-05.150947_WkkC55/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150947_2026-01-05.150947_WkkC55/data/sequences/peak-motifs_test_maxlen1000_top100_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.150947_2026-01-05.150947_WkkC55/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 100 Sum of sequence lengths 37360 Min sequence length 0 Max sequence length 1000 Average sequence length 373 Possible positions 37360 Sequences: # length ID 1 292 chr3:38466205-38466497 2 286 chr3:49383657-49383943 3 225 chr3:50563589-50563814 4 146 chr3:99972654-99972800 5 548 chr3:105366048-105366596 6 175 chr3:105367034-105367209 7 177 chr3:129330886-129331063 8 819 chr3:133287727-133288546 9 181 chr3:140718828-140719009 10 343 chr3:145997698-145998041 11 268 chr3:146002293-146002561 12 366 chr3:156323709-156324075 13 151 chr1:156474235-156474386 14 258 chr1:156474714-156474972 15 237 chr3:165461721-165461958 16 184 chr3:165462137-165462321 17 333 chr3:165592548-165592881 18 195 chr3:171752636-171752831 19 202 chr1:11990694-11990896 20 153 chr3:189249089-189249242 21 972 chr3:189655029-189656001 22 783 chr3:197044188-197044971 23 192 chr1:160737924-160738116 24 365 chr4:2782221-2782586 25 234 chr4:3454036-3454270 26 149 chr4:7085285-7085434 27 267 chr4:8637905-8638172 28 285 chr4:11438401-11438686 29 174 chr4:38156913-38157087 30 185 chr4:38162450-38162635 31 348 chr4:38163943-38164291 32 183 chr4:48317987-48318170 33 797 chr4:49093442-49094239 34 762 chr4:49094396-49095158 35 440 chr4:49095349-49095789 36 646 chr4:49096456-49097102 37 626 chr4:49098826-49099452 38 1000 chr4:49100192-49101244 39 477 chr4:49101390-49101867 40 397 chr4:49103146-49103543 41 528 chr4:49104364-49104892 42 679 chr4:49105315-49105994 43 575 chr4:49106309-49106884 44 220 chr4:49107431-49107651 45 463 chr4:49108023-49108486 46 652 chr4:49109173-49109825 47 484 chr4:49110261-49110745 48 559 chr4:49111555-49112114 49 500 chr4:49112431-49112931 50 999 chr4:72049502-72050502 51 616 chr4:100729379-100729995 52 154 chr4:122163744-122163898 53 155 chr4:122177712-122177867 54 605 chr4:148628832-148629437 55 189 chr4:148648360-148648549 56 307 chr4:154048837-154049144 57 317 chr4:154064190-154064507 58 147 chr4:166766587-166766734 59 146 chr4:187692589-187692735 60 310 chr4:187702060-187702370 61 387 chr1:172466117-172466504 62 571 chr1:172622226-172622797 63 226 chr5:14036828-14037054 64 325 chr5:14108847-14109172 65 156 chr5:26877220-26877376 66 239 chr5:27258005-27258244 67 157 chr5:61591853-61592010 68 437 chr1:178969118-178969555 69 174 chr1:178971761-178971935 70 151 chr1:178986129-178986280 71 310 chr1:178986464-178986774 72 226 chr1:178987269-178987495 73 872 chr5:100372631-100373503 74 687 chr5:100402801-100403488 75 190 chr5:100437549-100437739 76 159 chr5:103077874-103078033 77 859 chr5:121633785-121634644 78 216 chr5:131862387-131862603 79 349 chr5:133441096-133441445 80 270 chr5:133922767-133923037 81 313 chr5:133927256-133927569 82 154 chr5:134359738-134359892 83 980 chr1:183149499-183150479 84 178 chr5:137566296-137566474 85 370 chr5:137566661-137567031 86 152 chr5:137914878-137915030 87 746 chr5:149852542-149853288 88 432 chr5:149853731-149854163 89 536 chr5:156454284-156454820 90 146 chr5:157205041-157205187 91 232 chr5:172566656-172566888 92 260 chr5:176215556-176215816 93 398 chr5:176231075-176231473 94 415 chr5:178069676-178070091 95 207 chr5:180313055-180313262 96 187 chr6:2846813-2847000 97 415 chr6:11393684-11394099 98 319 chr6:12279576-12279895 99 223 chr6:14075123-14075346 100 310 chr6:15690857-15691167 Oligonucleotide statistics: Total occurrences 27740 Position interval parameters: Position interval 20 Number of windows 50 Total positions 37360 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 4 56 2 -24 [-479,-460] -469.5 4 80 3 -23 [-459,-440] -449.5 4 80 4 -22 [-439,-420] -429.5 6 106 5 -21 [-419,-400] -409.5 7 130 6 -20 [-399,-380] -389.5 10 173 7 -19 [-379,-360] -369.5 11 214 8 -18 [-359,-340] -349.5 12 224 9 -17 [-339,-320] -329.5 15 270 10 -16 [-319,-300] -309.5 18 325 11 -15 [-299,-280] -289.5 20 374 12 -14 [-279,-260] -269.5 24 446 13 -13 [-259,-240] -249.5 26 492 14 -12 [-239,-220] -229.5 28 551 15 -11 [-219,-200] -209.5 33 631 16 -10 [-199,-180] -189.5 39 726 17 -9 [-179,-160] -169.5 44 831 18 -8 [-159,-140] -149.5 54 1011 19 -7 [-139,-120] -129.5 59 1144 20 -6 [-119,-100] -109.5 71 1330 21 -5 [-99,-80] -89.5 85 1590 22 -4 [-79,-60] -69.5 100 1947 23 -3 [-59,-40] -49.5 100 2000 24 -2 [-39,-20] -29.5 100 2000 25 -1 [-19,0] -9.5 100 2000 26 0 [1,20] 10.5 100 2000 27 1 [21,40] 30.5 100 2000 28 2 [41,60] 50.5 100 2000 29 3 [61,80] 70.5 100 1929 30 4 [81,100] 90.5 85 1574 31 5 [101,120] 110.5 70 1317 32 6 [121,140] 130.5 59 1139 33 7 [141,160] 150.5 54 998 34 8 [161,180] 170.5 44 827 35 9 [181,200] 190.5 39 717 36 10 [201,220] 210.5 33 628 37 11 [221,240] 230.5 28 549 38 12 [241,260] 250.5 26 492 39 13 [261,280] 270.5 24 445 40 14 [281,300] 290.5 20 372 41 15 [301,320] 310.5 18 322 42 16 [321,340] 330.5 15 267 43 17 [341,360] 350.5 12 223 44 18 [361,380] 370.5 11 212 45 19 [381,400] 390.5 9 169 46 20 [401,420] 410.5 7 129 47 21 [421,440] 430.5 6 105 48 22 [441,460] 450.5 4 80 49 23 [461,480] 470.5 4 80 50 24 [481,500] 490.5 4 55 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 6306 | 256.8 | 49 | 5.9e-30 | 2.3e-29 | 28.63 | 1 | 11 | 8 | 7 | 16 | 25 | 26 | 43 | 29 | 39 | 24 | 48 | 56 | 59 | 53 | 75 | 95 | 120 | 157 | 198 | 220 | 337 | 386 | 393 | 383 | 384 | 424 | 373 | 389 | 344 | 281 | 200 | 204 | 163 | 128 | 90 | 73 | 51 | 61 | 50 | 40 | 36 | 24 | 35 | 28 | 25 | 28 | 28 | 12 | 18 | 9 |
| c | c | 6310 | 254.5 | 49 | 1.5e-29 | 6.1e-29 | 28.21 | 2 | 9 | 19 | 15 | 15 | 26 | 36 | 34 | 38 | 49 | 41 | 53 | 41 | 57 | 57 | 79 | 97 | 108 | 150 | 195 | 264 | 315 | 438 | 392 | 378 | 369 | 360 | 363 | 361 | 378 | 308 | 229 | 188 | 159 | 115 | 81 | 69 | 55 | 49 | 38 | 39 | 46 | 33 | 35 | 29 | 30 | 24 | 14 | 11 | 13 | 8 |
| a | a | 7519 | 201.6 | 49 | 2.1e-20 | 8.4e-20 | 19.08 | 3 | 5 | 17 | 18 | 26 | 30 | 31 | 31 | 52 | 53 | 61 | 67 | 91 | 76 | 74 | 90 | 130 | 184 | 207 | 224 | 268 | 341 | 407 | 471 | 487 | 432 | 446 | 476 | 462 | 433 | 304 | 263 | 184 | 145 | 105 | 102 | 99 | 83 | 72 | 80 | 67 | 50 | 57 | 38 | 54 | 31 | 24 | 27 | 15 | 19 | 10 |
| t | t | 7605 | 159.0 | 49 | 1.5e-13 | 6.1e-13 | 12.21 | 4 | 11 | 16 | 20 | 29 | 29 | 44 | 46 | 45 | 46 | 80 | 60 | 77 | 94 | 96 | 87 | 122 | 119 | 197 | 232 | 292 | 308 | 436 | 464 | 455 | 477 | 430 | 440 | 432 | 425 | 301 | 256 | 239 | 194 | 139 | 114 | 87 | 81 | 78 | 74 | 60 | 71 | 72 | 55 | 41 | 45 | 33 | 16 | 22 | 10 | 8 |
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