position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title oxLDL_CD4+_T_cell_chromatin_accessibility_2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 24119 Sum of sequence lengths 11764216 Min sequence length 0 Max sequence length 1000 Average sequence length 487 Possible positions 11764216 Oligonucleotide statistics: Total occurrences 11374890 Position interval parameters: Position interval 20 Number of windows 50 Total positions 11764216 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 1611 29202 2 -24 [-479,-460] -469.5 1980 35956 3 -23 [-459,-440] -449.5 2439 44423 4 -22 [-439,-420] -429.5 3025 55030 5 -21 [-419,-400] -409.5 3576 66238 6 -20 [-399,-380] -389.5 4225 78234 7 -19 [-379,-360] -369.5 5037 93212 8 -18 [-359,-340] -349.5 5902 110069 9 -17 [-339,-320] -329.5 6901 128511 10 -16 [-319,-300] -309.5 7900 148901 11 -15 [-299,-280] -289.5 9083 170981 12 -14 [-279,-260] -269.5 10187 193437 13 -13 [-259,-240] -249.5 11323 215882 14 -12 [-239,-220] -229.5 12386 237997 15 -11 [-219,-200] -209.5 13422 258714 16 -10 [-199,-180] -189.5 14480 279642 17 -9 [-179,-160] -169.5 15768 303161 18 -8 [-159,-140] -149.5 17731 335145 19 -7 [-139,-120] -129.5 19231 370831 20 -6 [-119,-100] -109.5 20606 399324 21 -5 [-99,-80] -89.5 22162 428783 22 -4 [-79,-60] -69.5 24064 462592 23 -3 [-59,-40] -49.5 24119 482380 24 -2 [-39,-20] -29.5 24119 482380 25 -1 [-19,0] -9.5 24119 482380 26 0 [1,20] 10.5 24119 482380 27 1 [21,40] 30.5 24119 482380 28 2 [41,60] 50.5 24119 482380 29 3 [61,80] 70.5 23944 460688 30 4 [81,100] 90.5 22078 427208 31 5 [101,120] 110.5 20535 397926 32 6 [121,140] 130.5 19153 369295 33 7 [141,160] 150.5 17642 333306 34 8 [161,180] 170.5 15698 301939 35 9 [181,200] 190.5 14418 278589 36 10 [201,220] 210.5 13364 257638 37 11 [221,240] 230.5 12336 236969 38 12 [241,260] 250.5 11267 214745 39 13 [261,280] 270.5 10126 192300 40 14 [281,300] 290.5 9033 169805 41 15 [301,320] 310.5 7845 147930 42 16 [321,340] 330.5 6846 127536 43 17 [341,360] 350.5 5853 109225 44 18 [361,380] 370.5 5003 92396 45 19 [381,400] 390.5 4181 77582 46 20 [401,420] 410.5 3548 65662 47 21 [421,440] 430.5 2987 54452 48 22 [441,460] 450.5 2413 43954 49 23 [461,480] 470.5 1960 35606 50 24 [481,500] 490.5 1593 28920 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 3407468 | 4735.6 | 49 | 0.0e+00 | 0 | 300 | 1 | 8374 | 10222 | 12605 | 15910 | 19215 | 22506 | 26476 | 31406 | 36877 | 42382 | 48822 | 55108 | 61153 | 66899 | 72114 | 78469 | 85815 | 94119 | 104078 | 112270 | 120310 | 129615 | 135347 | 135961 | 135965 | 136549 | 136830 | 137065 | 133357 | 124324 | 117022 | 109811 | 99855 | 91322 | 84225 | 78881 | 72771 | 66380 | 59380 | 52968 | 46158 | 39721 | 34059 | 28900 | 24027 | 20431 | 17292 | 13754 | 11146 | 9222 |
| a | a | 2285858 | 4071.1 | 49 | 0.0e+00 | 0 | 300 | 2 | 5964 | 7345 | 9083 | 11030 | 13276 | 15741 | 18753 | 21875 | 25486 | 28939 | 33553 | 37929 | 42385 | 46550 | 50977 | 55050 | 59949 | 66393 | 73205 | 79325 | 86038 | 93077 | 97697 | 96950 | 97016 | 96691 | 96692 | 96815 | 91186 | 83094 | 76607 | 70151 | 62755 | 55824 | 51426 | 47384 | 43346 | 38674 | 34142 | 30005 | 25972 | 22149 | 19310 | 16246 | 13698 | 11439 | 9573 | 7711 | 6276 | 5106 |
| c | c | 3400399 | 3652.3 | 49 | 0.0e+00 | 0 | 300 | 3 | 9179 | 11174 | 13723 | 16917 | 20357 | 24163 | 28959 | 34196 | 39475 | 46032 | 52296 | 59127 | 65484 | 72138 | 78395 | 84120 | 90761 | 100431 | 110343 | 117414 | 124251 | 132814 | 137059 | 136924 | 136540 | 136367 | 135480 | 135506 | 128773 | 120656 | 111806 | 104138 | 93818 | 84832 | 78443 | 72286 | 66466 | 60488 | 55047 | 48543 | 42798 | 36923 | 31725 | 26769 | 22325 | 18793 | 15400 | 12534 | 9995 | 8216 |
| t | t | 2281165 | 3574.2 | 49 | 0.0e+00 | 0 | 300 | 4 | 5248 | 6432 | 7933 | 9865 | 11794 | 13805 | 16538 | 19483 | 22732 | 26651 | 30093 | 33972 | 38654 | 43550 | 47751 | 52220 | 56429 | 63149 | 71082 | 77189 | 83868 | 91859 | 96618 | 96428 | 96786 | 96917 | 97623 | 97466 | 92762 | 85126 | 79011 | 72450 | 65192 | 59009 | 54635 | 50098 | 45848 | 41498 | 36900 | 32664 | 28524 | 25044 | 21066 | 18005 | 15495 | 13203 | 10725 | 8731 | 7248 | 5796 |
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