/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title oxLDL_CD4+_T_cell_chromatin_accessibility_2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	24119
	Sum of sequence lengths      	11764216
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	487
	Possible positions           	11740097
 Oligonucleotide statistics:
	Total occurrences    	11347371
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	11740097
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	1611	29202
	2	-24	[-479,-460]	-469.5	1980	35956
	3	-23	[-459,-440]	-449.5	2439	44423
	4	-22	[-439,-420]	-429.5	3025	55030
	5	-21	[-419,-400]	-409.5	3576	66238
	6	-20	[-399,-380]	-389.5	4225	78234
	7	-19	[-379,-360]	-369.5	5037	93212
	8	-18	[-359,-340]	-349.5	5902	110069
	9	-17	[-339,-320]	-329.5	6901	128511
	10	-16	[-319,-300]	-309.5	7900	148901
	11	-15	[-299,-280]	-289.5	9083	170981
	12	-14	[-279,-260]	-269.5	10187	193437
	13	-13	[-259,-240]	-249.5	11323	215882
	14	-12	[-239,-220]	-229.5	12386	237997
	15	-11	[-219,-200]	-209.5	13422	258714
	16	-10	[-199,-180]	-189.5	14480	279642
	17	-9	[-179,-160]	-169.5	15768	303161
	18	-8	[-159,-140]	-149.5	17731	335145
	19	-7	[-139,-120]	-129.5	19231	370831
	20	-6	[-119,-100]	-109.5	20606	399324
	21	-5	[-99,-80]	-89.5	22162	428783
	22	-4	[-79,-60]	-69.5	24064	462592
	23	-3	[-59,-40]	-49.5	24119	482380
	24	-2	[-39,-20]	-29.5	24119	482380
	25	-1	[-19,0]	-9.5	24119	482380
	26	0	[1,20]	10.5	24119	482380
	27	1	[21,40]	30.5	24119	482380
	28	2	[41,60]	50.5	24119	482205
	29	3	[61,80]	70.5	23889	458822
	30	4	[81,100]	90.5	22040	425665
	31	5	[101,120]	110.5	20511	396544
	32	6	[121,140]	130.5	19113	367784
	33	7	[141,160]	150.5	17602	331362
	34	8	[161,180]	170.5	15669	300659
	35	9	[181,200]	190.5	14392	277535
	36	10	[201,220]	210.5	13344	256610
	37	11	[221,240]	230.5	12313	235900
	38	12	[241,260]	250.5	11243	213604
	39	13	[261,280]	270.5	10090	191207
	40	14	[281,300]	290.5	9002	168617
	41	15	[301,320]	310.5	7827	146931
	42	16	[321,340]	330.5	6811	126543
	43	17	[341,360]	350.5	5832	108375
	44	18	[361,380]	370.5	4986	91574
	45	19	[381,400]	390.5	4169	76949
	46	20	[401,420]	410.5	3526	65101
	47	21	[421,440]	430.5	2973	53878
	48	22	[441,460]	450.5	2402	43501
	49	23	[461,480]	470.5	1945	35239
	50	24	[481,500]	490.5	1580	27327

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gg gg 1142584 6145.9 49 0.0e+00 0 300 1 2796 3446 4206 5456 6509 7708 8874 10716 12433 14338 16574 18649 20524 22468 23793 25907 28475 30902 33934 36258 39166 42016 44041 44371 44293 43999 44507 44608 43905 41377 39196 37285 34138 31649 29392 27893 25802 23818 21283 19140 16624 14096 12027 10210 8557 7127 6186 4806 3992 3114
cc cc 1139254 5032.3 49 0.0e+00 0 300 2 3286 3972 4856 5954 7177 8668 10338 12240 14029 16384 18578 21213 23309 25558 27658 29347 31563 34674 37947 39581 41246 43908 44903 44706 44290 44084 43988 43732 41306 39147 36163 33968 30576 27948 25923 23979 22126 20032 18612 16411 14465 12467 10686 9095 7565 6312 5132 4219 3303 2630
ca ca 697780 4049.2 49 0.0e+00 0 300 3 1857 2316 2860 3555 4229 4942 6006 6980 7999 9298 10784 12163 13399 14595 16141 17195 18864 20864 23421 25214 27336 29007 30296 30026 29940 29834 29462 29893 27470 25243 22907 20786 18385 16144 14703 13455 12213 11020 9876 8424 7483 6313 5523 4661 3823 3160 2640 2061 1707 1307
tg tg 699021 3628.3 49 0.0e+00 0 300 4 1483 1807 2238 2793 3336 4010 4641 5483 6466 7677 8768 9814 11199 12406 13698 15216 16643 18548 21280 23264 25328 27815 29153 29697 29683 30254 30299 30303 29181 26865 24829 23008 20618 18688 17124 15881 14689 13362 11705 10436 9140 8022 6781 5792 4925 4259 3527 2806 2271 1810
aa aa 587363 2783.0 49 0.0e+00 0 300 5 1617 1958 2513 2849 3519 4251 4930 5830 6789 7468 8750 9868 11065 12203 13355 14561 15728 17325 18845 20560 22212 24221 25584 25572 25763 25206 25566 25076 23591 21160 19480 17568 15566 13850 12862 11707 10818 9491 8140 7334 6139 5237 4611 3762 3417 2718 2265 1863 1491 1109
tt tt 583563 2586.2 49 0.0e+00 0 300 6 1241 1523 1925 2388 2790 3245 3990 4648 5556 6454 7101 8160 9332 10800 11882 13034 14134 15667 18021 19686 21540 23921 25457 25146 25544 25012 25793 25692 24042 22032 20471 18552 16733 15319 14211 13115 11761 10600 9467 8311 7171 6394 5282 4606 4080 3357 2722 2304 1951 1400
at at 370675 2270.1 49 0.0e+00 0 300 7 828 1024 1297 1594 1808 2190 2657 3129 3542 4267 4892 5476 6353 7210 7960 8595 9400 10463 11810 13116 14257 15557 16844 16662 16545 16596 16679 16783 15366 13815 12712 11566 10201 9224 8409 7757 6873 6222 5240 4649 3968 3411 2999 2414 2129 1787 1442 1173 1015 769
cg cg 756798 2157.0 49 0.0e+00 0 300 8 2034 2453 3057 3756 4627 5333 6379 7570 8984 10293 11652 13146 14506 15958 16951 18444 19847 21746 23543 25243 26284 27925 29062 29192 29178 29371 29093 29117 28075 26780 25322 23922 21811 20144 18685 17399 15903 14513 13283 11759 10329 8907 7737 6415 5300 4554 3749 3060 2487 1920
ac ac 521046 2116.6 49 0.0e+00 0 300 9 1476 1822 2183 2705 3216 3884 4630 5273 6167 7037 8054 9202 10098 11041 12059 12923 14031 15675 17264 18302 19955 21371 22233 21988 21894 22015 21510 21714 20191 18785 16843 15533 13720 12152 11163 10206 9323 8462 7762 6527 5981 4873 4405 3639 2962 2550 2094 1691 1364 1098
gt gt 522395 1950.6 49 0.0e+00 0 300 10 1163 1452 1761 2270 2809 3178 3637 4355 5148 5910 6751 7755 8700 9470 10341 11426 12428 13944 15747 17017 18758 20443 21520 21574 21572 22259 22283 22135 21638 19717 18523 17028 15319 14091 12805 11929 10976 9992 8954 7863 6984 6062 5149 4481 3695 3370 2691 2102 1810 1410
ta ta 323078 1113.8 49 0.0e+00 0 300 11 800 970 1112 1442 1697 2003 2454 2843 3303 3680 4287 4882 5670 6386 7018 7596 8215 9281 10455 11223 12259 13521 14282 13967 14013 14135 14065 14252 13348 11953 11167 10178 8892 7972 7507 6785 6074 5367 4736 4092 3566 3074 2665 2240 1873 1606 1410 1075 957 730
gc gc 1063463 381.9 49 4.3e-53 6.9e-52 51.16 12 2712 3244 4041 4988 6045 7104 8609 10125 11896 13698 15792 17733 19720 21581 23500 25516 27711 30475 33990 36477 38260 40857 42200 42652 42827 42757 42440 42768 41054 38443 36129 33884 30394 27694 25495 23621 21706 19752 17627 15705 13685 11902 10210 8589 7107 5946 5038 4087 3168 2509
tc tc 669204 240.8 49 4.0e-27 6.4e-26 25.19 13 1723 2130 2654 3237 3970 4539 5446 6503 7404 8831 9917 11102 12438 13932 15133 16355 17414 19626 21291 22977 24707 26548 27676 27586 27507 27473 27426 27144 25683 23856 22183 20330 18502 16709 15499 14066 13065 11918 10741 9568 8430 7353 6142 5191 4484 3857 2951 2447 1993 1547
ga ga 671396 226.2 49 1.3e-24 2.2e-23 22.67 14 1698 2073 2592 3191 3846 4510 5352 6200 7387 8424 9687 10952 12186 13360 14453 15598 17170 18767 20364 22478 24087 26263 27539 27309 27231 27475 27554 27476 26266 24362 22797 21201 19465 17523 16252 15160 13988 12466 11179 9956 8536 7383 6420 5394 4467 3839 3173 2615 2054 1678
ct ct 798784 155.8 49 4.6e-13 7.4e-12 11.13 15 1997 2433 2949 3650 4318 5215 6232 7398 8447 10035 11266 12592 14250 16009 17628 19110 20462 23126 25401 27342 29344 31942 32750 32957 33085 33040 32898 32668 31432 29030 26996 25021 22422 20216 18827 17147 15895 14577 12969 11587 10226 8907 7520 6345 5452 4588 3723 3067 2396 1897
ag ag 800967 119.1 49 9.1e-08 1.5e-06 5.84 16 2040 2541 3085 3880 4730 5413 6531 7629 8979 10150 11838 13364 14846 16078 17584 18950 20769 22897 25252 27319 29574 31887 32988 32688 32785 32831 32906 33161 31555 28949 27236 25120 22849 20313 18744 17463 16104 14275 12779 11239 9700 8436 7144 6261 5075 4273 3669 2898 2346 1844 
 Host name	rsat
 Job started	2026-01-05.162709
 Job done	2026-01-05.162813
 Seconds	63.43
	user	63.43
	system	0.05
	cuser	0
;	csystem	0