/var/www/html/rsat/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title oxLDL_CD4+_T_cell_chromatin_accessibility_2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/05/peak-motifs.2026-01-05.162114_2026-01-05.162114_sWmD3V/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	1000
	Sum of sequence lengths      	405261
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	405
	Possible positions           	404261
 Oligonucleotide statistics:
	Total occurrences    	394793
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	404261
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	15	256
	2	-24	[-479,-460]	-469.5	21	373
	3	-23	[-459,-440]	-449.5	24	456
	4	-22	[-439,-420]	-429.5	29	552
	5	-21	[-419,-400]	-409.5	38	666
	6	-20	[-399,-380]	-389.5	46	838
	7	-19	[-379,-360]	-369.5	59	1073
	8	-18	[-359,-340]	-349.5	88	1530
	9	-17	[-339,-320]	-329.5	115	1992
	10	-16	[-319,-300]	-309.5	172	2956
	11	-15	[-299,-280]	-289.5	242	4209
	12	-14	[-279,-260]	-269.5	294	5399
	13	-13	[-259,-240]	-249.5	359	6539
	14	-12	[-239,-220]	-229.5	406	7651
	15	-11	[-219,-200]	-209.5	472	8803
	16	-10	[-199,-180]	-189.5	526	10047
	17	-9	[-179,-160]	-169.5	573	10951
	18	-8	[-159,-140]	-149.5	676	12475
	19	-7	[-139,-120]	-129.5	753	14376
	20	-6	[-119,-100]	-109.5	823	15807
	21	-5	[-99,-80]	-89.5	896	17219
	22	-4	[-79,-60]	-69.5	998	18956
	23	-3	[-59,-40]	-49.5	1000	20000
	24	-2	[-39,-20]	-29.5	1000	20000
	25	-1	[-19,0]	-9.5	1000	20000
	26	0	[1,20]	10.5	1000	20000
	27	1	[21,40]	30.5	1000	20000
	28	2	[41,60]	50.5	1000	19992
	29	3	[61,80]	70.5	990	18756
	30	4	[81,100]	90.5	892	17078
	31	5	[101,120]	110.5	818	15663
	32	6	[121,140]	130.5	749	14219
	33	7	[141,160]	150.5	671	12281
	34	8	[161,180]	170.5	567	10859
	35	9	[181,200]	190.5	520	9934
	36	10	[201,220]	210.5	465	8670
	37	11	[221,240]	230.5	402	7551
	38	12	[241,260]	250.5	348	6415
	39	13	[261,280]	270.5	289	5291
	40	14	[281,300]	290.5	237	4067
	41	15	[301,320]	310.5	169	2832
	42	16	[321,340]	330.5	109	1939
	43	17	[341,360]	350.5	86	1478
	44	18	[361,380]	370.5	59	1050
	45	19	[381,400]	390.5	44	822
	46	20	[401,420]	410.5	36	648
	47	21	[421,440]	430.5	29	542
	48	22	[441,460]	450.5	24	450
	49	23	[461,480]	470.5	21	363
	50	24	[481,500]	490.5	14	237

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 37265 141.5 49 6.4e-11 1e-09 8.99 1 24 35 29 55 50 68 84 142 165 244 394 528 609 680 848 1041 1138 1144 1436 1353 1473 1787 1892 1861 1821 1870 1798 1810 1733 1503 1329 1252 1051 956 937 846 717 611 567 382 258 165 155 114 81 84 56 46 23 20
cc cc 18075 109.7 49 1.5e-06 2.4e-05 4.62 2 14 26 21 15 26 42 57 82 90 107 219 259 283 364 439 418 464 550 622 738 804 874 872 848 901 883 913 775 778 740 724 634 544 503 465 407 345 316 218 168 165 81 66 63 28 34 25 27 16 22
tg tg 30574 93.2 49 1.5e-04 0.0023 2.63 3 12 17 21 35 46 59 65 99 140 219 310 401 462 564 625 720 820 926 1064 1228 1327 1412 1526 1547 1559 1601 1466 1583 1507 1298 1242 1118 989 834 713 652 521 432 385 320 191 158 77 68 72 36 35 29 25 18
gg gg 18205 89.3 49 3.8e-04 0.0061 2.21 4 8 20 13 22 25 37 47 81 89 153 218 243 338 320 416 484 478 569 615 685 760 862 820 923 908 846 842 865 875 734 681 655 523 550 492 424 332 325 248 191 120 119 66 49 41 35 22 16 14 6
tt tt 36512 89.0 49 4.1e-04 0.0066 2.18 5 27 29 35 47 53 53 99 141 206 259 355 492 611 732 821 915 938 1066 1228 1433 1571 1595 1751 1793 1761 1743 1882 1777 1660 1562 1419 1284 1140 1072 975 800 706 634 486 380 241 173 157 89 79 70 49 50 49 24
gt gt 22224 86.1 49 8.4e-04 0.013 1.87 6 9 17 24 25 30 44 60 83 105 170 213 279 327 359 490 503 567 660 767 910 908 1065 1118 1109 1146 1137 1081 1144 1055 985 932 838 725 621 525 493 363 293 295 210 157 108 70 49 55 26 26 23 19 6
ta ta 24699 76.8 49 6.7e-03 0.11 0.97 7 24 23 36 32 43 64 77 108 115 177 229 333 430 451 564 642 692 788 904 969 1036 1162 1199 1166 1235 1156 1134 1179 1096 1079 960 837 722 691 643 571 498 368 378 268 162 96 100 70 53 42 37 30 19 11
ga ga 24555 67.8 49 3.9e-02 0.63 0.20 8 15 22 25 31 36 42 62 66 122 190 274 298 390 488 522 658 665 772 879 962 1057 1153 1259 1229 1231 1283 1210 1280 1197 1047 886 835 728 613 588 491 432 409 307 214 152 129 89 58 55 29 31 20 18 6
ac ac 22094 60.5 49 1.3e-01 2 -0.31 9 14 26 25 28 42 44 58 87 103 164 230 261 327 439 480 534 587 678 796 841 947 1063 1140 1154 1080 1073 1158 1116 1032 952 909 815 660 547 523 425 387 353 261 204 149 90 76 40 41 41 37 20 17 20
ca ca 30795 59.3 49 1.5e-01 2.4 -0.37 10 14 28 35 33 50 61 83 108 140 228 298 401 466 610 655 738 762 933 1109 1194 1332 1495 1535 1594 1536 1513 1626 1573 1452 1293 1237 1133 942 775 743 614 561 479 344 298 216 139 109 77 52 54 46 29 29 23
tc tc 24353 58.2 49 1.7e-01 2.8 -0.44 11 19 15 26 28 40 55 77 83 107 175 234 337 380 433 508 564 646 721 813 936 1062 1153 1248 1201 1228 1254 1258 1177 1088 1052 1016 876 773 661 575 491 478 385 302 247 196 111 82 57 37 40 29 31 27 21
ct ct 28588 55.9 49 2.3e-01 3.7 -0.57 12 28 17 26 36 52 71 72 108 145 200 297 403 462 527 621 670 807 863 939 1116 1245 1308 1469 1406 1409 1456 1409 1397 1288 1245 1164 1047 871 791 671 602 520 460 374 293 211 136 76 59 52 46 40 30 29 24
at at 28872 53.8 49 3.0e-01 4.7 -0.68 13 15 26 30 35 44 61 87 106 121 199 269 383 481 563 600 757 782 915 1080 1114 1270 1345 1416 1413 1433 1439 1348 1425 1343 1226 1069 960 897 794 734 602 602 435 399 331 194 116 115 77 60 48 34 36 24 19
ag ag 29112 47.5 49 5.3e-01 8.5 -0.93 14 19 25 40 33 42 58 79 94 156 219 321 374 469 563 654 730 766 899 1014 1161 1215 1395 1447 1429 1462 1433 1499 1493 1355 1265 1115 998 885 741 710 614 514 471 368 254 198 146 112 85 63 36 44 24 21 4
gc gc 15922 32.5 49 9.7e-01 15 -1.19 15 6 10 16 17 24 34 37 57 87 106 180 220 263 335 327 385 430 480 559 654 698 738 752 794 781 795 777 803 778 662 624 572 496 418 390 352 292 243 183 164 99 82 45 40 30 24 22 14 17 10
cg cg 2948 26.1 49 1.0e+00 16 -1.20 16 1 3 6 3 3 4 9 16 14 26 31 27 47 47 66 68 86 87 114 124 123 155 139 140 153 148 149 154 138 123 125 102 95 71 71 58 51 48 39 18 20 13 10 3 5 3 3 5 1 3 
 Host name	rsat
 Job started	2026-01-05.162120
 Job done	2026-01-05.162122
 Seconds	2.44
	user	2.44
	system	0.02
	cuser	0
;	csystem	0