position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.111926_2026-01-08.111926_ViZhty/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title RAD21KOvsWT -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.111926_2026-01-08.111926_ViZhty/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.111926_2026-01-08.111926_ViZhty/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.111926_2026-01-08.111926_ViZhty/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 10003 Sum of sequence lengths 3425490 Min sequence length 0 Max sequence length 1000 Average sequence length 342 Possible positions 3425490 Oligonucleotide statistics: Total occurrences 3265672 Position interval parameters: Position interval 20 Number of windows 50 Total positions 3425490 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 15 272 2 -24 [-479,-460] -469.5 20 367 3 -23 [-459,-440] -449.5 24 425 4 -22 [-439,-420] -429.5 30 529 5 -21 [-419,-400] -409.5 35 660 6 -20 [-399,-380] -389.5 49 855 7 -19 [-379,-360] -369.5 60 1094 8 -18 [-359,-340] -349.5 82 1450 9 -17 [-339,-320] -329.5 108 1940 10 -16 [-319,-300] -309.5 140 2418 11 -15 [-299,-280] -289.5 185 3214 12 -14 [-279,-260] -269.5 290 4752 13 -13 [-259,-240] -249.5 476 7442 14 -12 [-239,-220] -229.5 921 13560 15 -11 [-219,-200] -209.5 1893 28116 16 -10 [-199,-180] -189.5 3355 53248 17 -9 [-179,-160] -169.5 5368 88111 18 -8 [-159,-140] -149.5 7588 131075 19 -7 [-139,-120] -129.5 10003 177839 20 -6 [-119,-100] -109.5 10003 200060 21 -5 [-99,-80] -89.5 10003 200060 22 -4 [-79,-60] -69.5 10003 200060 23 -3 [-59,-40] -49.5 10003 200060 24 -2 [-39,-20] -29.5 10003 200060 25 -1 [-19,0] -9.5 10003 200060 26 0 [1,20] 10.5 10003 200060 27 1 [21,40] 30.5 10003 200060 28 2 [41,60] 50.5 10003 200060 29 3 [61,80] 70.5 10003 200060 30 4 [81,100] 90.5 10003 200060 31 5 [101,120] 110.5 10003 200060 32 6 [121,140] 130.5 9899 175450 33 7 [141,160] 150.5 7467 128877 34 8 [161,180] 170.5 5245 86102 35 9 [181,200] 190.5 3268 51801 36 10 [201,220] 210.5 1841 27129 37 11 [221,240] 230.5 887 13109 38 12 [241,260] 250.5 454 7244 39 13 [261,280] 270.5 285 4647 40 14 [281,300] 290.5 180 3166 41 15 [301,320] 310.5 138 2388 42 16 [321,340] 330.5 107 1911 43 17 [341,360] 350.5 82 1430 44 18 [361,380] 370.5 58 1084 45 19 [381,400] 390.5 49 841 46 20 [401,420] 410.5 35 654 47 21 [421,440] 430.5 29 522 48 22 [441,460] 450.5 24 421 49 23 [461,480] 470.5 19 362 50 24 [481,500] 490.5 15 265 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 862613 | 2423.6 | 49 | 0.0e+00 | 0 | 300 | 1 | 80 | 82 | 100 | 122 | 160 | 206 | 274 | 415 | 510 | 641 | 898 | 1289 | 2113 | 3626 | 7130 | 13315 | 21417 | 31318 | 41810 | 47342 | 48562 | 49717 | 52207 | 53386 | 54702 | 55085 | 53664 | 51864 | 50150 | 48719 | 47618 | 41944 | 31100 | 20863 | 12973 | 7033 | 3564 | 1936 | 1234 | 849 | 631 | 492 | 347 | 283 | 241 | 174 | 130 | 130 | 108 | 59 |
| g | g | 864160 | 2421.5 | 49 | 0.0e+00 | 0 | 300 | 2 | 51 | 89 | 106 | 115 | 160 | 225 | 304 | 380 | 513 | 686 | 899 | 1340 | 1946 | 3566 | 7318 | 13427 | 21791 | 31721 | 42650 | 48325 | 48890 | 50300 | 51725 | 53996 | 55300 | 54769 | 53642 | 51516 | 50012 | 48443 | 47293 | 41205 | 30360 | 20977 | 12933 | 7171 | 3376 | 1975 | 1246 | 806 | 596 | 494 | 391 | 303 | 217 | 191 | 159 | 99 | 90 | 73 |
| a | a | 768541 | 2372.9 | 49 | 0.0e+00 | 0 | 300 | 3 | 45 | 76 | 64 | 81 | 115 | 175 | 235 | 284 | 381 | 445 | 660 | 958 | 1526 | 2864 | 6309 | 11951 | 20508 | 30878 | 42577 | 47578 | 46305 | 45203 | 43881 | 42680 | 41204 | 40567 | 41647 | 43608 | 45478 | 46716 | 47596 | 41495 | 30255 | 19572 | 11539 | 5821 | 2705 | 1319 | 871 | 617 | 450 | 339 | 256 | 167 | 138 | 125 | 101 | 65 | 65 | 46 |
| t | t | 770358 | 2292.1 | 49 | 0.0e+00 | 0 | 300 | 4 | 54 | 60 | 94 | 124 | 131 | 149 | 184 | 270 | 336 | 437 | 567 | 961 | 1500 | 2837 | 6041 | 12046 | 20179 | 30974 | 42735 | 47450 | 46726 | 45702 | 43653 | 41682 | 40683 | 41293 | 42783 | 44417 | 45178 | 46261 | 47286 | 41714 | 30423 | 20083 | 11775 | 5899 | 2779 | 1540 | 935 | 588 | 469 | 391 | 246 | 187 | 157 | 108 | 91 | 74 | 59 | 47 |
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