position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.111926_2026-01-08.111926_ViZhty/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title RAD21KOvsWT -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.111926_2026-01-08.111926_ViZhty/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.111926_2026-01-08.111926_ViZhty/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.111926_2026-01-08.111926_ViZhty/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 5740 Sum of sequence lengths 1844522 Min sequence length 0 Max sequence length 952 Average sequence length 321 Possible positions 1844522 Oligonucleotide statistics: Total occurrences 1769887 Position interval parameters: Position interval 20 Number of windows 48 Total positions 1844522 Degrees of freedom 47 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -24 [-479,-460] -469.5 1 16 2 -23 [-459,-440] -449.5 3 42 3 -22 [-439,-420] -429.5 9 126 4 -21 [-419,-400] -409.5 13 246 5 -20 [-399,-380] -389.5 15 280 6 -19 [-379,-360] -369.5 22 386 7 -18 [-359,-340] -349.5 26 496 8 -17 [-339,-320] -329.5 32 584 9 -16 [-319,-300] -309.5 44 751 10 -15 [-299,-280] -289.5 52 962 11 -14 [-279,-260] -269.5 72 1248 12 -13 [-259,-240] -249.5 108 1792 13 -12 [-239,-220] -229.5 244 3259 14 -11 [-219,-200] -209.5 586 8082 15 -10 [-199,-180] -189.5 1285 18809 16 -9 [-179,-160] -169.5 2414 36818 17 -8 [-159,-140] -149.5 3955 63939 18 -7 [-139,-120] -129.5 5740 98546 19 -6 [-119,-100] -109.5 5740 114800 20 -5 [-99,-80] -89.5 5740 114800 21 -4 [-79,-60] -69.5 5740 114800 22 -3 [-59,-40] -49.5 5740 114800 23 -2 [-39,-20] -29.5 5740 114800 24 -1 [-19,0] -9.5 5740 114800 25 0 [1,20] 10.5 5740 114800 26 1 [21,40] 30.5 5740 114800 27 2 [41,60] 50.5 5740 114800 28 3 [61,80] 70.5 5740 114800 29 4 [81,100] 90.5 5740 114800 30 5 [101,120] 110.5 5740 114800 31 6 [121,140] 130.5 5673 96784 32 7 [141,160] 150.5 3882 62356 33 8 [161,180] 170.5 2330 35655 34 9 [181,200] 190.5 1238 18087 35 10 [201,220] 210.5 563 7727 36 11 [221,240] 230.5 229 3115 37 12 [241,260] 250.5 107 1754 38 13 [261,280] 270.5 71 1228 39 14 [281,300] 290.5 52 954 40 15 [301,320] 310.5 44 741 41 16 [321,340] 330.5 32 578 42 17 [341,360] 350.5 26 490 43 18 [361,380] 370.5 22 379 44 19 [381,400] 390.5 15 278 45 20 [401,420] 410.5 13 239 46 21 [421,440] 430.5 9 119 47 22 [441,460] 450.5 3 40 48 23 [461,480] 470.5 1 16 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -469.5 occurrences in window 1 [-479,-460] 11 -449.5 occurrences in window 2 [-459,-440] 12 -429.5 occurrences in window 3 [-439,-420] 13 -409.5 occurrences in window 4 [-419,-400] 14 -389.5 occurrences in window 5 [-399,-380] 15 -369.5 occurrences in window 6 [-379,-360] 16 -349.5 occurrences in window 7 [-359,-340] 17 -329.5 occurrences in window 8 [-339,-320] 18 -309.5 occurrences in window 9 [-319,-300] 19 -289.5 occurrences in window 10 [-299,-280] 20 -269.5 occurrences in window 11 [-279,-260] 21 -249.5 occurrences in window 12 [-259,-240] 22 -229.5 occurrences in window 13 [-239,-220] 23 -209.5 occurrences in window 14 [-219,-200] 24 -189.5 occurrences in window 15 [-199,-180] 25 -169.5 occurrences in window 16 [-179,-160] 26 -149.5 occurrences in window 17 [-159,-140] 27 -129.5 occurrences in window 18 [-139,-120] 28 -109.5 occurrences in window 19 [-119,-100] 29 -89.5 occurrences in window 20 [-99,-80] 30 -69.5 occurrences in window 21 [-79,-60] 31 -49.5 occurrences in window 22 [-59,-40] 32 -29.5 occurrences in window 23 [-39,-20] 33 -9.5 occurrences in window 24 [-19,0] 34 10.5 occurrences in window 25 [1,20] 35 30.5 occurrences in window 26 [21,40] 36 50.5 occurrences in window 27 [41,60] 37 70.5 occurrences in window 28 [61,80] 38 90.5 occurrences in window 29 [81,100] 39 110.5 occurrences in window 30 [101,120] 40 130.5 occurrences in window 31 [121,140] 41 150.5 occurrences in window 32 [141,160] 42 170.5 occurrences in window 33 [161,180] 43 190.5 occurrences in window 34 [181,200] 44 210.5 occurrences in window 35 [201,220] 45 230.5 occurrences in window 36 [221,240] 46 250.5 occurrences in window 37 [241,260] 47 270.5 occurrences in window 38 [261,280] 48 290.5 occurrences in window 39 [281,300] 49 310.5 occurrences in window 40 [301,320] 50 330.5 occurrences in window 41 [321,340] 51 350.5 occurrences in window 42 [341,360] 52 370.5 occurrences in window 43 [361,380] 53 390.5 occurrences in window 44 [381,400] 54 410.5 occurrences in window 45 [401,420] 55 430.5 occurrences in window 46 [421,440] 56 450.5 occurrences in window 47 [441,460] 57 470.5 occurrences in window 48 [461,480]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 400830 | 1666.3 | 47 | 0.0e+00 | 0 | 300 | 1 | 0 | 7 | 25 | 54 | 48 | 68 | 85 | 110 | 140 | 189 | 213 | 352 | 687 | 1638 | 4202 | 8290 | 14810 | 23210 | 26687 | 25908 | 25212 | 24447 | 23594 | 22742 | 21922 | 22899 | 24003 | 25123 | 25649 | 26557 | 22573 | 14279 | 7893 | 3886 | 1583 | 625 | 317 | 209 | 147 | 118 | 91 | 81 | 55 | 33 | 31 | 25 | 11 | 2 |
| t | t | 400882 | 1597.6 | 47 | 0.0e+00 | 0 | 300 | 2 | 3 | 9 | 24 | 54 | 59 | 71 | 83 | 100 | 118 | 170 | 231 | 331 | 617 | 1637 | 4048 | 8246 | 14748 | 22991 | 26328 | 26132 | 25139 | 24208 | 22626 | 22150 | 22630 | 23685 | 24394 | 25290 | 25951 | 26537 | 22531 | 14356 | 8079 | 3786 | 1602 | 639 | 339 | 257 | 205 | 112 | 102 | 81 | 57 | 34 | 54 | 26 | 8 | 4 |
| c | c | 483685 | 1551.6 | 47 | 0.0e+00 | 0 | 300 | 3 | 10 | 13 | 36 | 56 | 76 | 114 | 147 | 142 | 208 | 278 | 367 | 510 | 884 | 2288 | 4881 | 9370 | 15834 | 24012 | 28244 | 28442 | 30068 | 30891 | 31868 | 32768 | 33377 | 32019 | 30979 | 29747 | 29054 | 28444 | 23925 | 15892 | 9181 | 4781 | 2047 | 820 | 518 | 350 | 268 | 224 | 139 | 133 | 97 | 93 | 46 | 30 | 9 | 5 |
| g | g | 484490 | 1365.7 | 47 | 0.0e+00 | 0 | 300 | 4 | 3 | 13 | 37 | 62 | 77 | 103 | 129 | 163 | 208 | 266 | 354 | 494 | 927 | 2248 | 5053 | 9591 | 15983 | 24381 | 28751 | 29522 | 30029 | 30870 | 32329 | 32955 | 32577 | 31855 | 30960 | 29824 | 28923 | 28205 | 23601 | 15340 | 9156 | 4900 | 2039 | 786 | 464 | 315 | 239 | 205 | 153 | 115 | 93 | 72 | 69 | 34 | 12 | 5 |
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