; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.113908_2026-01-08.113908_nI4Dk5/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.113908_2026-01-08.113908_nI4Dk5/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.113908_2026-01-08.113908_nI4Dk5/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.113908_2026-01-08.113908_nI4Dk5/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	0	5	0	0	0	1	0	0	0	3	3
c	6	7	20	21	0	1	19	19	1	7	10
g	11	3	0	0	19	3	1	1	9	2	6
t	4	6	1	0	2	16	1	1	11	9	2
//
; Sites	21
>site_0
CACCGGCCTTG
>site_1
TTCCGTTCTAT
>site_2
CCCCGGCCTCG
>site_3
GTCCGTCCCGG
>site_4
GCCCGTCCTCC
>site_5
TCCCGTCCGCC
>site_6
GCCCGTCCGCG
>site_7
GCCCGTCCGTC
>site_8
GTCCGTCCGTC
>site_9
GTCCGTCCGTC
>site_10
GTCCGTCCGTC
>site_11
GTCCGTCGTCC
>site_12
CGTCGTCCTCC
>site_13
GCCCGTCCTCG
>site_14
GGCCGTCCGGC
>site_15
TACCTACCTAC
>site_16
GGCCGTGCGTA
>site_17
TACCGGCCGTG
>site_18
CCCCGCCCTAA
>site_19
CACCTTCCTTT
>site_20
CACCGTCTTTA
a	4	2	0	0	0	0	0	0	3	2
c	3	3	9	0	0	9	7	9	3	0
g	2	2	0	0	0	0	0	0	1	4
t	0	2	0	9	9	0	2	0	2	3
//
; Sites	9
>site_0
GGCTTCCCAT
>site_1
CCCTTCCCCG
>site_2
GCCTTCCCCG
>site_3
CGCTTCCCGG
>site_4
CCCTTCCCCG
>site_5
AACTTCTCTA
>site_6
AACTTCTCTA
>site_7
ATCTTCCCAT
>site_8
ATCTTCCCAT
a	1	4	0	0	0	0	1	0	0	1	1	3
c	4	2	5	0	14	14	6	12	1	13	3	6
g	7	7	9	14	0	0	3	2	13	0	5	4
t	2	1	0	0	0	0	4	0	0	0	5	1
//
; Sites	14
>site_0
AGCGCCCGGCTA
>site_1
GAGGCCCCGCGC
>site_2
TCGGCCGCGCTC
>site_3
CCGGCCTCGCCC
>site_4
TGCGCCTCGCTT
>site_5
GACGCCACGCGG
>site_6
CGGGCCGCGCTC
>site_7
GGCGCCCCGCAA
>site_8
CGGGCCCGGCGC
>site_9
GGGGCCTCGCGA
>site_10
GAGGCCCCCCGG
>site_11
GAGGCCCCGACG
>site_12
GGGGCCTCGCCG
>site_13
CTCGCCGCGCTC
a	7	7	17	1	20	15	19	2	19	5	10
c	3	4	1	4	0	4	1	17	0	7	2
g	4	3	1	1	0	1	0	1	0	7	4
t	6	6	1	14	0	0	0	0	1	1	4
//
; Sites	20
>site_0
CAATACACAAC
>site_1
TTACAAACAGA
>site_2
GAATACACACA
>site_3
ATAGAAACAAG
>site_4
TTACAAACAGA
>site_5
CAATAAACAAG
>site_6
GGGTAAACACA
>site_7
AGATAGACACA
>site_8
TAATACACACA
>site_9
ACAAAAACAGT
>site_10
CTATAAAGAGG
>site_11
GGTTAAACTAT
>site_12
TTACAAACAGA
>site_13
GAATACACACA
>site_14
TAATAACCAGA
>site_15
TCATAAACAAG
>site_16
ACATAAAAACT
>site_17
ATACAAACATC
>site_18
AACTAAACAGA
>site_19
ACATAAAAACT
a	0	3	0	1	0	4	9	10	0	2	3
c	1	0	0	0	0	0	0	0	1	0	3
g	1	3	0	9	0	6	0	0	7	2	0
t	8	4	10	0	10	0	1	0	2	6	4
//
; Sites	10
>site_0
TTTGTAAAGTC
>site_1
TGTGTAAAGGA
>site_2
TTTGTAAAGTC
>site_3
GGTGTGAACTA
>site_4
CTTGTGAATGT
>site_5
TGTGTGTATTA
>site_6
TTTGTAAAGTC
>site_7
TATATGAAGTT
>site_8
TATGTGAAGAT
>site_9
TATGTGAAGAT
; Host name	rsat
; Job started	2026-01-08.113924
; Job done	2026-01-08.113924
; Seconds	0.15
;	user	0.15
;	system	0.01
;	cuser	0
;	csystem	0
