# One-to-n alignments

    Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.113908_2026-01-08.113908_nI4Dk5/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.113908_2026-01-08.113908_nI4Dk5/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

## One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=17; shift=0; ncol=17; cgyCCGtCCGtCCkyss
    ; Alignment reference
    a	2	1	0	0	0	0	0	0	0	0	1	2	0	0	0	3	0
    c	9	2	8	12	12	0	2	12	13	1	3	10	11	1	9	6	5
    g	3	9	2	2	2	14	3	2	0	13	1	2	3	8	0	5	6
    t	0	2	4	0	0	0	9	0	1	0	9	0	0	5	5	0	3
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/2; ncol2=17; w=0; offset=0; strand=D; shift=0; score=      1; cgyCCGtCCGtCCkyss
    ; cor=; Ncor=
    a	2	1	0	0	0	0	0	0	0	0	1	2	0	0	0	3	0
    c	9	2	8	12	12	0	2	12	13	1	3	10	11	1	9	6	5
    g	3	9	2	2	2	14	3	2	0	13	1	2	3	8	0	5	6
    t	0	2	4	0	0	0	9	0	1	0	9	0	0	5	5	0	3
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=2/2; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.576003; -syCCGTCCkys-----
    ; cor=; Ncor=
    a	0	0	5	0	0	0	1	0	0	0	3	3	0	0	0	0	0
    c	0	6	7	20	21	0	1	19	19	1	7	10	0	0	0	0	0
    g	0	11	3	0	0	19	3	1	1	9	2	6	0	0	0	0	0
    t	0	4	6	1	0	2	16	1	1	11	9	2	0	0	0	0	0

## One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=18; shift=0; ncol=18; scCGrsCGCGGCCsgkcS
    ; Alignment reference
    a	1	2	1	1	4	1	0	1	1	1	0	0	0	1	1	1	2	0
    c	5	5	7	0	2	3	10	0	8	0	0	10	9	4	1	1	5	7
    g	4	1	1	8	3	6	0	8	1	9	10	0	1	4	6	4	1	3
    t	0	2	1	1	1	0	0	1	0	0	0	0	0	1	2	4	2	0
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/4; ncol2=18; w=0; offset=0; strand=D; shift=0; score=      1; scCGrsCGCGGCCsgkcS
    ; cor=; Ncor=
    a	1	2	1	1	4	1	0	1	1	1	0	0	0	1	1	1	2	0
    c	5	5	7	0	2	3	10	0	8	0	0	10	9	4	1	1	5	7
    g	4	1	1	8	3	6	0	8	1	9	10	0	1	4	6	4	1	3
    t	0	2	1	1	1	0	0	1	0	0	0	0	0	1	2	4	2	0
oligos_7nt_test_vs_ctrl_m3_rc_shift1 (oligos_7nt_test_vs_ctrl_m3_rc) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3_rc; m=2/4; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.655873; -sCgaGCGmGGCssv---
    ; cor=; Ncor=
    a	0	1	1	2	5	0	0	0	5	0	0	1	0	1	3	0	0	0
    c	0	4	7	2	2	0	10	0	3	0	0	9	5	5	4	0	0	0
    g	0	3	2	4	2	10	0	10	1	10	10	0	5	3	3	0	0	0
    t	0	2	0	2	1	0	0	0	1	0	0	0	0	1	0	0	0	0
oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=3/4; ncol2=14; w=0; offset=4; strand=D; shift=4; score=0.618845; ----sgCCCGGCCGGGcs
    ; cor=; Ncor=
    a	0	0	0	0	3	4	1	1	2	2	0	2	0	1	0	1	5	1
    c	0	0	0	0	10	5	17	16	17	1	0	20	19	2	5	3	8	8
    g	0	0	0	0	8	8	3	5	2	19	20	0	1	17	16	17	5	10
    t	0	0	0	0	1	5	1	0	1	0	2	0	2	2	1	1	4	3
oligos_6nt_test_vs_ctrl_m3_rc_shift3 (oligos_6nt_test_vs_ctrl_m3_rc) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=4/4; ncol2=12; w=0; offset=3; strand=R; shift=3; score=0.560962; ---smGCGrGGCsys---
    ; cor=; Ncor=
    a	0	0	0	1	5	0	0	0	4	0	0	0	0	1	2	0	0	0
    c	0	0	0	4	5	0	13	2	3	0	0	14	9	7	7	0	0	0
    g	0	0	0	6	3	13	1	12	6	14	14	0	5	2	4	0	0	0
    t	0	0	0	3	1	1	0	0	1	0	0	0	0	4	1	0	0	0

## One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift1 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=11; shift=1; ncol=12; -syCCGTCCkys
    ; Alignment reference
    a	0	0	5	0	0	0	1	0	0	0	3	3
    c	0	6	7	20	21	0	1	19	19	1	7	10
    g	0	11	3	0	0	19	3	1	1	9	2	6
    t	0	4	6	1	0	2	16	1	1	11	9	2
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=1; score=      1; -syCCGTCCkys
    ; cor=; Ncor=
    a	0	0	5	0	0	0	1	0	0	0	3	3
    c	0	6	7	20	21	0	1	19	19	1	7	10
    g	0	11	3	0	0	19	3	1	1	9	2	6
    t	0	4	6	1	0	2	16	1	1	11	9	2
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=2/2; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.576003; cgyCCGtCCGtC
    ; cor=; Ncor=
    a	2	1	0	0	0	0	0	0	0	0	1	2
    c	9	2	8	12	12	0	2	12	13	1	3	10
    g	3	9	2	2	2	14	3	2	0	13	1	2
    t	0	2	4	0	0	0	9	0	1	0	9	0

## One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift4 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=14; shift=4; ncol=18; ----sgCCCGGCCGGGcs
    ; Alignment reference
    a	0	0	0	0	3	4	1	1	2	2	0	2	0	1	0	1	5	1
    c	0	0	0	0	10	5	17	16	17	1	0	20	19	2	5	3	8	8
    g	0	0	0	0	8	8	3	5	2	19	20	0	1	17	16	17	5	10
    t	0	0	0	0	1	5	1	0	1	0	2	0	2	2	1	1	4	3
oligos_7nt_test_vs_ctrl_m4_shift4 (oligos_7nt_test_vs_ctrl_m4) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/2; ncol2=14; w=0; offset=0; strand=D; shift=4; score=      1; ----sgCCCGGCCGGGcs
    ; cor=; Ncor=
    a	0	0	0	0	3	4	1	1	2	2	0	2	0	1	0	1	5	1
    c	0	0	0	0	10	5	17	16	17	1	0	20	19	2	5	3	8	8
    g	0	0	0	0	8	8	3	5	2	19	20	0	1	17	16	17	5	10
    t	0	0	0	0	1	5	1	0	1	0	2	0	2	2	1	1	4	3
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=2/2; ncol2=18; w=-4; offset=-4; strand=D; shift=0; score=0.618845; scCGrsCGCGGCCsgkcS
    ; cor=; Ncor=
    a	1	2	1	1	4	1	0	1	1	1	0	0	0	1	1	1	2	0
    c	5	5	7	0	2	3	10	0	8	0	0	10	9	4	1	1	5	7
    g	4	1	1	8	3	6	0	8	1	9	10	0	1	4	6	4	1	3
    t	0	2	1	1	1	0	0	1	0	0	0	0	0	1	2	4	2	0

## One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift3 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_test_vs_ctrl_m3_shift3 (oligos_7nt_test_vs_ctrl_m3) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=14; shift=3; ncol=17; ---bssGCCkCGCtcGs
    ; Alignment reference
    a	0	0	0	0	1	0	0	0	0	1	0	0	0	1	2	0	2
    c	0	0	0	3	3	5	0	10	10	1	10	0	10	2	4	2	3
    g	0	0	0	4	5	5	9	0	0	3	0	10	0	2	2	7	4
    t	0	0	0	3	1	0	1	0	0	5	0	0	0	5	2	1	1
oligos_7nt_test_vs_ctrl_m3_shift3 (oligos_7nt_test_vs_ctrl_m3) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/3; ncol2=14; w=0; offset=0; strand=D; shift=3; score=      1; ---bssGCCkCGCtcGs
    ; cor=; Ncor=
    a	0	0	0	0	1	0	0	0	0	1	0	0	0	1	2	0	2
    c	0	0	0	3	3	5	0	10	10	1	10	0	10	2	4	2	3
    g	0	0	0	4	5	5	9	0	0	3	0	10	0	2	2	7	4
    t	0	0	0	3	1	0	1	0	0	5	0	0	0	5	2	1	1
oligos_6nt_test_vs_ctrl_m3_shift3 (oligos_6nt_test_vs_ctrl_m3) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=2/3; ncol2=12; w=0; offset=0; strand=D; shift=3; score=0.817296; ---srsGCCyCGCks--
    ; cor=; Ncor=
    a	0	0	0	1	4	0	0	0	0	1	0	0	1	1	3	0	0
    c	0	0	0	4	2	5	0	14	14	6	12	1	13	3	6	0	0
    g	0	0	0	7	7	9	14	0	0	3	2	13	0	5	4	0	0
    t	0	0	0	2	1	0	0	0	0	4	0	0	0	5	1	0	0
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2_rc; m=3/3; ncol2=18; w=-3; offset=-3; strand=R; shift=0; score=0.655873; SgmcsGGCCGCGsyCGg
    ; cor=; Ncor=
    a	0	2	4	2	1	0	0	0	0	0	1	0	0	1	1	1	2
    c	3	1	4	6	4	1	0	10	9	1	8	0	6	3	8	1	1
    g	7	5	1	1	4	9	10	0	0	8	0	10	3	2	0	7	5
    t	0	2	1	1	1	0	0	0	1	1	1	0	1	4	1	1	2

## One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; TdTGTrAAGth
    ; Alignment reference
    a	0	3	0	1	0	4	9	10	0	2	3
    c	1	0	0	0	0	0	0	0	1	0	3
    g	1	3	0	9	0	6	0	0	7	2	0
    t	8	4	10	0	10	0	1	0	2	6	4
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score=      1; TdTGTrAAGth
    ; cor=; Ncor=
    a	0	3	0	1	0	4	9	10	0	2	3
    c	1	0	0	0	0	0	0	0	1	0	3
    g	1	3	0	9	0	6	0	0	7	2	0
    t	8	4	10	0	10	0	1	0	2	6	4

## One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift1 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=10; shift=1; ncol=11; -mcCTTCCCmk
    ; Alignment reference
    a	0	4	2	0	0	0	0	0	0	3	2
    c	0	3	3	9	0	0	9	7	9	3	0
    g	0	2	2	0	0	0	0	0	0	1	4
    t	0	0	2	0	9	9	0	2	0	2	3
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/2; ncol2=10; w=0; offset=0; strand=D; shift=1; score=      1; -mcCTTCCCmk
    ; cor=; Ncor=
    a	0	4	2	0	0	0	0	0	0	3	2
    c	0	3	3	9	0	0	9	7	9	3	0
    g	0	2	2	0	0	0	0	0	0	1	4
    t	0	0	2	0	9	9	0	2	0	2	3
oligos_7nt_test_vs_ctrl_m5_rc_shift0 (oligos_7nt_test_vs_ctrl_m5_rc) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5_rc; m=2/2; ncol2=13; w=-1; offset=-1; strand=R; shift=0; score=0.572954; ssCCtTCCCCG
    ; cor=; Ncor=
    a	0	0	0	0	1	0	0	0	0	1	0
    c	6	5	13	13	2	3	11	14	10	11	0
    g	8	6	0	1	3	1	1	0	2	2	14
    t	0	3	1	0	8	10	2	0	2	0	0

## One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift3 ; 4 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_test_vs_ctrl_m3_shift3 (oligos_6nt_test_vs_ctrl_m3) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=12; shift=3; ncol=15; ---srsGCCyCGCks
    ; Alignment reference
    a	0	0	0	1	4	0	0	0	0	1	0	0	1	1	3
    c	0	0	0	4	2	5	0	14	14	6	12	1	13	3	6
    g	0	0	0	7	7	9	14	0	0	3	2	13	0	5	4
    t	0	0	0	2	1	0	0	0	0	4	0	0	0	5	1
oligos_6nt_test_vs_ctrl_m3_shift3 (oligos_6nt_test_vs_ctrl_m3) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/3; ncol2=12; w=0; offset=0; strand=D; shift=3; score=      1; ---srsGCCyCGCks
    ; cor=; Ncor=
    a	0	0	0	1	4	0	0	0	0	1	0	0	1	1	3
    c	0	0	0	4	2	5	0	14	14	6	12	1	13	3	6
    g	0	0	0	7	7	9	14	0	0	3	2	13	0	5	4
    t	0	0	0	2	1	0	0	0	0	4	0	0	0	5	1
oligos_7nt_test_vs_ctrl_m3_shift3 (oligos_7nt_test_vs_ctrl_m3) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=2/3; ncol2=14; w=0; offset=0; strand=D; shift=3; score=0.817296; ---bssGCCkCGCtc
    ; cor=; Ncor=
    a	0	0	0	0	1	0	0	0	0	1	0	0	0	1	2
    c	0	0	0	3	3	5	0	10	10	1	10	0	10	2	4
    g	0	0	0	4	5	5	9	0	0	3	0	10	0	2	2
    t	0	0	0	3	1	0	1	0	0	5	0	0	0	5	2
oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2_rc; m=3/3; ncol2=18; w=-3; offset=-3; strand=R; shift=0; score=0.560962; SgmcsGGCCGCGsyC
    ; cor=; Ncor=
    a	0	2	4	2	1	0	0	0	0	0	1	0	0	1	1
    c	3	1	4	6	4	1	0	10	9	1	8	0	6	3	8
    g	7	5	1	1	4	9	10	0	0	8	0	10	3	2	0
    t	0	2	1	1	1	0	0	0	1	1	1	0	1	4	1

## One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; wwATAAACAva
    ; Alignment reference
    a	7	7	17	1	20	15	19	2	19	5	10
    c	3	4	1	4	0	4	1	17	0	7	2
    g	4	3	1	1	0	1	0	1	0	7	4
    t	6	6	1	14	0	0	0	0	1	1	4
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4) |  |  |  |
    ; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score=      1; wwATAAACAva
    ; cor=; Ncor=
    a	7	7	17	1	20	15	19	2	19	5	10
    c	3	4	1	4	0	4	1	17	0	7	2
    g	4	3	1	1	0	1	0	1	0	7	4
    t	6	6	1	14	0	0	0	0	1	1	4

## One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name | Aligned logos | cor | Ncor | Aligned matrices
--- | --- | --- | --- | ---
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=13; shift=0; ncol=13; ssCGGGGAaGGss
    ; Alignment reference
    a	0	3	0	0	2	0	2	10	8	0	1	3	0
    c	6	4	14	2	2	0	1	1	3	1	0	6	8
    g	7	5	0	11	10	14	11	3	2	13	13	5	6
    t	1	2	0	1	0	0	0	0	1	0	0	0	0
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/2; ncol2=13; w=0; offset=0; strand=D; shift=0; score=      1; ssCGGGGAaGGss
    ; cor=; Ncor=
    a	0	3	0	0	2	0	2	10	8	0	1	3	0
    c	6	4	14	2	2	0	1	1	3	1	0	6	8
    g	7	5	0	11	10	14	11	3	2	13	13	5	6
    t	1	2	0	1	0	0	0	0	1	0	0	0	0
oligos_6nt_test_vs_ctrl_m2_rc_shift2 (oligos_6nt_test_vs_ctrl_m2_rc) |  |  |  |
    ; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2_rc; m=2/2; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.572954; --mkGGGAAGgk-
    ; cor=; Ncor=
    a	0	0	3	2	0	2	0	9	9	0	2	0	0
    c	0	0	4	1	0	0	0	0	0	0	2	2	0
    g	0	0	0	3	9	7	9	0	0	9	3	3	0
    t	0	0	2	3	0	0	0	0	0	0	2	4	0