position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.113908_2026-01-08.113908_nI4Dk5/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title SMC5vsneg -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.113908_2026-01-08.113908_nI4Dk5/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.113908_2026-01-08.113908_nI4Dk5/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/08/peak-motifs.2026-01-08.113908_2026-01-08.113908_nI4Dk5/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 44 Sum of sequence lengths 14993 Min sequence length 0 Max sequence length 1000 Average sequence length 340 Possible positions 14993 Sequences: # length ID 1 300 GL000199.1:51835-52135 2 241 GL000199.1:82885-83126 3 241 GL000199.1:91746-91987 4 305 GL000199.1:92512-92817 5 258 GL000199.1:107166-107424 6 321 GL000220.1:119699-120020 7 294 GL000220.1:145298-145592 8 236 JH636052.4:7687-7923 9 246 JH636052.4:18062-18308 10 235 JH636052.4:28528-28763 11 273 JH636052.4:30039-30312 12 259 JH636052.4:31004-31263 13 282 JH636052.4:36244-36526 14 471 JH636052.4:48182-48653 15 523 JH636052.4:53105-53628 16 366 JH636052.4:60943-61309 17 258 JH636052.4:77940-78198 18 302 JH636052.4:79852-80154 19 465 JH636052.4:82088-82553 20 482 chr1:121484835-121485317 21 289 chr10:42600147-42600436 22 236 chr16:46386849-46387085 23 345 chr16:46391271-46391616 24 310 chr16:46391905-46392215 25 296 chr16:46394508-46394804 26 247 chr16:46395164-46395411 27 604 chr16:46398184-46398788 28 250 chr16:46403559-46403809 29 1000 chr16:46404492-46405529 30 1000 chr16:46405785-46407060 31 389 chr16:46407404-46407793 32 246 chr16:46408275-46408521 33 388 chr16:46424669-46425057 34 247 chr18:44555084-44555331 35 245 chr6:58776397-58776642 36 399 chr6:58777460-58777859 37 239 chr6:58779090-58779329 38 290 chr7:61969305-61969595 39 248 chr8:43824640-43824888 40 263 chr8:46849170-46849433 41 254 chrX:61686573-61686827 42 288 chrY:58822021-58822309 43 302 chrY:58856545-58856847 44 260 chrY:58912342-58912602 Oligonucleotide statistics: Total occurrences 5893 Position interval parameters: Position interval 20 Number of windows 50 Total positions 14993 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 2 40 2 -24 [-479,-460] -469.5 2 40 3 -23 [-459,-440] -449.5 2 40 4 -22 [-439,-420] -429.5 2 40 5 -21 [-419,-400] -409.5 2 40 6 -20 [-399,-380] -389.5 2 40 7 -19 [-379,-360] -369.5 2 40 8 -18 [-359,-340] -349.5 2 40 9 -17 [-339,-320] -329.5 2 40 10 -16 [-319,-300] -309.5 3 42 11 -15 [-299,-280] -289.5 3 60 12 -14 [-279,-260] -269.5 4 62 13 -13 [-259,-240] -249.5 5 82 14 -12 [-239,-220] -229.5 7 129 15 -11 [-219,-200] -209.5 7 140 16 -10 [-199,-180] -189.5 11 193 17 -9 [-179,-160] -169.5 13 234 18 -8 [-159,-140] -149.5 24 356 19 -7 [-139,-120] -129.5 40 588 20 -6 [-119,-100] -109.5 44 874 21 -5 [-99,-80] -89.5 44 880 22 -4 [-79,-60] -69.5 44 880 23 -3 [-59,-40] -49.5 44 880 24 -2 [-39,-20] -29.5 44 880 25 -1 [-19,0] -9.5 44 880 26 0 [1,20] 10.5 44 880 27 1 [21,40] 30.5 44 880 28 2 [41,60] 50.5 44 880 29 3 [61,80] 70.5 44 880 30 4 [81,100] 90.5 44 880 31 5 [101,120] 110.5 44 872 32 6 [121,140] 130.5 38 568 33 7 [141,160] 150.5 23 342 34 8 [161,180] 170.5 12 232 35 9 [181,200] 190.5 11 189 36 10 [201,220] 210.5 7 140 37 11 [221,240] 230.5 7 127 38 12 [241,260] 250.5 4 80 39 13 [261,280] 270.5 4 61 40 14 [281,300] 290.5 3 60 41 15 [301,320] 310.5 3 42 42 16 [321,340] 330.5 2 40 43 17 [341,360] 350.5 2 40 44 18 [361,380] 370.5 2 40 45 19 [381,400] 390.5 2 40 46 20 [401,420] 410.5 2 40 47 21 [421,440] 430.5 2 40 48 22 [441,460] 450.5 2 40 49 23 [461,480] 470.5 2 40 50 24 [481,500] 490.5 2 40 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 1840 | 108.5 | 49 | 2.2e-06 | 8.6e-06 | 5.07 | 1 | 7 | 8 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | 7 | 12 | 7 | 10 | 26 | 15 | 19 | 22 | 58 | 109 | 137 | 114 | 112 | 97 | 102 | 107 | 124 | 119 | 117 | 100 | 112 | 119 | 58 | 18 | 15 | 19 | 0 | 5 | 3 | 9 | 7 | 1 | 0 | 0 | 2 | 8 | 0 | 0 | 5 | 13 | 14 |
| c | c | 1331 | 98.5 | 49 | 3.5e-05 | 0.00014 | 3.85 | 2 | 3 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 3 | 9 | 4 | 6 | 13 | 9 | 6 | 16 | 42 | 77 | 109 | 98 | 81 | 90 | 69 | 79 | 86 | 82 | 90 | 89 | 71 | 74 | 45 | 14 | 9 | 8 | 0 | 3 | 2 | 5 | 2 | 2 | 0 | 0 | 3 | 4 | 0 | 0 | 4 | 10 | 7 |
| a | a | 1603 | 80.3 | 49 | 3.2e-03 | 0.013 | 1.90 | 3 | 6 | 5 | 2 | 0 | 0 | 0 | 0 | 0 | 1 | 9 | 8 | 8 | 5 | 17 | 12 | 18 | 22 | 46 | 74 | 114 | 98 | 101 | 96 | 73 | 103 | 97 | 90 | 120 | 105 | 106 | 122 | 47 | 20 | 19 | 14 | 0 | 2 | 4 | 4 | 8 | 0 | 0 | 0 | 1 | 5 | 0 | 0 | 1 | 9 | 11 |
| g | g | 1119 | 60.9 | 49 | 1.2e-01 | 0.48 | 0.32 | 4 | 4 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 7 | 1 | 3 | 14 | 9 | 12 | 14 | 32 | 60 | 79 | 76 | 70 | 71 | 57 | 76 | 81 | 79 | 68 | 59 | 77 | 71 | 30 | 18 | 6 | 9 | 0 | 3 | 3 | 2 | 3 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 2 | 5 | 8 |
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