/var/www/html/rsat/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices.tab 
 compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices.tab
 Program version       	1.118
 Slow mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices_query_matrices.transfac
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.163959_q9P26j/compare-matrices_query_matrices.transfac
		file1	1	10	751	wwCAACTAww
	file2	3346 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5		awmAGTTr
		file2		2		8		3		rkTAGTTr
		file2		3		8		5		wamaGTTr
		file2		4		8		1		GTTAGTTA
		file2		5		8		2		kwCwGTTr
		file2		6		8		2		GTTAGTTr
		file2		7		8		6		wwmaGTTr
		file2		8		8		2		rsTkGTTr
		file2		9		8		8		RkTwGKTr
		file2		10		8		1		TACTGTTG
		file2		11		8		4		WhhWGTTr
		...	3336 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	9	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	10	w1           	Width of the first matrix
	11	w2           	Width of the second matrix
	12	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	13	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	14	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	15	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	16	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	17	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	18	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	19	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	20	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	21	rcor         	Matching rank for cor
	22	rNcor        	Matching rank for Ncor
	23	rlogoDP      	Matching rank for logoDP
	24	rNsEucl      	Matching rank for NsEucl
	25	rNSW         	Matching rank for NSW
	26	rank_mean    	Mean of the matching ranks on all selected metrics
	27	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NSW NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank
cluster_6 MYB23_MA1767.1_JASPAR cluster_6 MYB23:MA1767.1:JASPAR 0.896 0.672 9.856 0.948 0.92428 10 11 9 12 0.7500 0.9000 0.8182 D 1 .wCAACTAww yCAACwAmm.. 2 12 1 1 1 3.4000 1
cluster_6 MYB23.DAP_M0571_AthalianaCistrome cluster_6 MYB23.DAP:M0571:AthalianaCistrome 0.896 0.672 0.730 0.948 0.92426 10 11 9 12 0.7500 0.9000 0.8182 R 1 .wCAACTAww YCAACWAMM.. 3 13 47 2 2 13.4000 2
cluster_6 MYB60_MA1774.2_JASPAR cluster_6 MYB60:MA1774.2:JASPAR 0.822 0.673 8.714 0.911 0.90045 10 10 9 11 0.8182 0.9000 0.9000 D 1 .wCAACTAww yCAACyACy. 18 10 7 20 22 15.4000 3
cluster_6 MYB94_MA1781.2_JASPAR cluster_6 MYB94:MA1781.2:JASPAR 0.816 0.668 8.345 0.908 0.89905 10 10 9 11 0.8182 0.9000 0.9000 D 1 .wCAACTAww yCAACyACy. 22 16 9 22 26 19.0000 4
cluster_6 MYB23_MA1767.2_JASPAR cluster_6 MYB23:MA1767.2:JASPAR 0.918 0.551 9.849 0.941 0.90096 10 6 6 10 0.6000 0.6000 1.0000 D 2 ..CAACTA.. CAACwA 1 75 2 18 3 19.8000 5
cluster_6 AtMYB73_II_AtMYB73_II_AthaMYB cluster_6 AtMYB73_II:AtMYB73_II:AthaMYB 0.865 0.692 0.171 0.925 0.90350 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACTRHY 6 4 80 13 6 21.8000 6
cluster_6 AtMYB85_II_AtMYB85_II_AthaMYB cluster_6 AtMYB85_II:AtMYB85_II:AthaMYB 0.885 0.708 0.048 0.937 0.91123 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACWAVY 5 3 105 3 5 24.2000 7
cluster_6 MYB30.ampDAP_M0539_AthalianaCistrome cluster_6 MYB30.ampDAP:M0539:AthalianaCistrome 0.817 0.545 7.257 0.921 0.91103 10 15 10 15 0.6667 1.0000 0.6667 D -5 wwCAACTAww .....mCCAACyAmy 21 77 14 4 9 25.0000 8
cluster_6 MYB96_MA2030.2_JASPAR cluster_6 MYB96:MA2030.2:JASPAR 0.783 0.712 7.775 0.896 0.89820 10 11 10 11 0.9091 1.0000 0.9091 D 0 wwCAACTAww mCCAACTACC. 51 2 10 25 41 25.8000 9
cluster_6 AtMYB124_II_AtMYB124_II_AthaMYB cluster_6 AtMYB124_II:AtMYB124_II:AthaMYB 0.856 0.685 0.051 0.921 0.90055 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACWAVY 8 6 90 19 8 26.2000 10
cluster_6 AtMYB45_II_AtMYB45_II_AthaMYB cluster_6 AtMYB45_II:AtMYB45_II:AthaMYB 0.860 0.688 0.049 0.924 0.90258 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACTAMC 7 5 100 17 7 27.2000 11
cluster_6 AtMYB10_I_AtMYB10_I_AthaMYB cluster_6 AtMYB10_I:AtMYB10_I:AthaMYB 0.831 0.664 0.874 0.910 0.89402 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACWDWW 16 18 46 33 24 27.4000 12
cluster_6 AtMYB14_II_AtMYB14_II_AthaMYB cluster_6 AtMYB14_II:AtMYB14_II:AthaMYB 0.846 0.677 0.051 0.918 0.89853 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACTAMY 10 8 90 23 11 28.4000 13
cluster_6 AtMYB94_II_AtMYB94_II_AthaMYB cluster_6 AtMYB94_II:AtMYB94_II:AthaMYB 0.844 0.675 0.063 0.915 0.89693 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww CAACTAAC 11 9 84 27 13 28.8000 14
cluster_6 AtMYB72_II_AtMYB72_II_AthaMYB cluster_6 AtMYB72_II:AtMYB72_II:AthaMYB 0.851 0.681 0.049 0.920 0.90023 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACTACY 9 7 100 21 10 29.4000 15
cluster_6 AT1G18960_UN0826.1_JASPAR cluster_6 AT1G18960:UN0826.1:JASPAR 0.892 0.487 6.718 0.938 0.89825 10 7 6 11 0.5455 0.6000 0.8571 D -1 wwCAAC.... .AmCAAC 4 94 21 24 4 29.4000 16
cluster_6 AtMYB59_II_AtMYB59_II_AthaMYB cluster_6 AtMYB59_II:AtMYB59_II:AthaMYB 0.841 0.673 0.051 0.915 0.89673 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACHAVY 12 11 90 28 14 31.0000 17
cluster_6 ATY13.ampDAP_M0537_AthalianaCistrome cluster_6 ATY13.ampDAP:M0537:AthalianaCistrome 0.798 0.532 6.372 0.914 0.90734 10 15 10 15 0.6667 1.0000 0.6667 D -5 wwCAACTAww .....mCCAACyAmy 38 79 23 6 15 32.2000 18
cluster_6 MYB60.DAP_M0563_AthalianaCistrome cluster_6 MYB60.DAP:M0563:AthalianaCistrome 0.812 0.428 8.720 0.914 0.90734 10 19 10 19 0.5263 1.0000 0.5263 D -4 wwCAACTAww ....yyCAACyACy..... 24 107 5 8 17 32.2000 19
cluster_6 MYB60_MA1774.1_JASPAR cluster_6 MYB60:MA1774.1:JASPAR 0.812 0.428 8.719 0.914 0.90734 10 19 10 19 0.5263 1.0000 0.5263 D -4 wwCAACTAww ....yyCAACyACy..... 25 108 6 7 16 32.4000 20
cluster_6 AtMYB30_II_AtMYB30_II_AthaMYB cluster_6 AtMYB30_II:AtMYB30_II:AthaMYB 0.838 0.671 0.168 0.910 0.89407 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAMCTRHC 13 14 81 32 23 32.6000 21
cluster_6 ATMYB31_MA1738.1_JASPAR cluster_6 ATMYB31:MA1738.1:JASPAR 0.796 0.531 6.271 0.914 0.90709 10 15 10 15 0.6667 1.0000 0.6667 D -5 wwCAACTAww .....mCCAMCyAmh 39 80 26 9 18 34.4000 22
cluster_6 MYB94_MA1781.1_JASPAR cluster_6 MYB94:MA1781.1:JASPAR 0.806 0.424 8.353 0.912 0.90603 10 19 10 19 0.5263 1.0000 0.5263 D -4 wwCAACTAww ....yyCAACyACy..... 27 109 8 11 20 35.0000 23
cluster_6 ATY13.DAP_M0496_AthalianaCistrome cluster_6 ATY13.DAP:M0496:AthalianaCistrome 0.796 0.531 6.270 0.914 0.90706 10 15 10 15 0.6667 1.0000 0.6667 D -5 wwCAACTAww .....mCCAMCyAmh 40 81 27 10 19 35.4000 24
cluster_6 MYB99_UN0368.1_JASPAR cluster_6 MYB99:UN0368.1:JASPAR 0.751 0.751 9.161 0.882 0.89156 10 10 10 10 1.0000 1.0000 1.0000 D 0 wwCAACTAww yyCACCTAmy 75 1 3 39 60 35.6000 25
cluster_6 AtMYB112_II_AtMYB112_II_AthaMYB cluster_6 AtMYB112_II:AtMYB112_II:AthaMYB 0.818 0.654 0.300 0.904 0.89042 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACTAVY 20 22 62 42 33 35.8000 26
cluster_6 AtMYB0_II_AtMYB0_II_AthaMYB cluster_6 AtMYB0_II:AtMYB0_II:AthaMYB 0.838 0.670 0.057 0.906 0.89163 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACTAMY 14 15 86 38 28 36.2000 27
cluster_6 MYB52_MYB52_2_ArabidopsisPBM cluster_6 MYB52:MYB52_2:ArabidopsisPBM 0.800 0.654 0.281 0.901 0.89528 10 10 9 11 0.8182 0.9000 0.9000 R 1 .wCAACTAww GCAACTAAC. 36 21 66 30 34 37.4000 28
cluster_6 AT1G24250.DAP_M0719_AthalianaCistrome cluster_6 AT1G24250.DAP:M0719:AthalianaCistrome 0.801 0.445 5.191 0.916 0.90857 10 18 10 18 0.5556 1.0000 0.5556 D -1 wwCAACTAww .yyyAACtaCC....... 32 103 36 5 12 37.6000 29
cluster_6 MYB30_MA1768.1_JASPAR cluster_6 MYB30:MA1768.1:JASPAR 0.783 0.522 6.906 0.906 0.90304 10 15 10 15 0.6667 1.0000 0.6667 D -2 wwCAACTAww ..mcCAACyACC... 49 82 19 15 29 38.8000 30
cluster_6 AtMYB6_II_AtMYB6_II_AthaMYB cluster_6 AtMYB6_II:AtMYB6_II:AthaMYB 0.831 0.664 0.048 0.909 0.89345 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACHAVY 15 17 105 34 25 39.2000 31
cluster_6 MYB30.DAP_M0549_AthalianaCistrome cluster_6 MYB30.DAP:M0549:AthalianaCistrome 0.783 0.522 6.907 0.906 0.90303 10 15 10 15 0.6667 1.0000 0.6667 D -2 wwCAACTAww ..mcCAACyACC... 50 83 18 16 30 39.4000 32
cluster_6 MYB30_MA1768.2_JASPAR cluster_6 MYB30:MA1768.2:JASPAR 0.792 0.549 6.903 0.901 0.89508 10 12 9 13 0.6923 0.9000 0.7500 D 1 .wCAACTAww cCAACyACC... 43 76 20 31 35 41.0000 33
cluster_6 AtMYB15_I_AtMYB15_I_AthaMYB cluster_6 AtMYB15_I:AtMYB15_I:AthaMYB 0.801 0.641 0.354 0.897 0.88654 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACTGWW 34 31 55 51 39 42.0000 34
cluster_6 AtMYB121_II_AtMYB121_II_AthaMYB cluster_6 AtMYB121_II:AtMYB121_II:AthaMYB 0.820 0.656 0.049 0.905 0.89084 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAMCWAMY 19 20 99 41 32 42.2000 35
cluster_6 AtMYB80_II_AtMYB80_II_AthaMYB cluster_6 AtMYB80_II:AtMYB80_II:AthaMYB 0.824 0.659 0.048 0.906 0.89144 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAMCWAMC 17 19 105 40 31 42.4000 36
cluster_6 AtMYB121_I_AtMYB121_I_AthaMYB cluster_6 AtMYB121_I:AtMYB121_I:AthaMYB 0.800 0.640 0.651 0.896 0.88574 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACWDWH 35 32 48 55 43 42.6000 37
cluster_6 MYB94.DAP_M0556_AthalianaCistrome cluster_6 MYB94.DAP:M0556:AthalianaCistrome 0.805 0.424 1.376 0.912 0.90600 10 19 10 19 0.5263 1.0000 0.5263 R -4 wwCAACTAww ....YYCAACYACY..... 28 110 45 12 21 43.2000 38
cluster_6 AtMYB37_I_AtMYB37_I_AthaMYB cluster_6 AtMYB37_I:AtMYB37_I:AthaMYB 0.804 0.643 0.185 0.898 0.88726 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACTGAW 30 28 78 49 38 44.6000 39
cluster_6 AtMYB44_II_AtMYB44_II_AthaMYB cluster_6 AtMYB44_II:AtMYB44_II:AthaMYB 0.802 0.641 0.295 0.895 0.88524 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACTAHC 31 29 64 56 44 44.8000 40
cluster_6 MYB96_MA2030.1_JASPAR cluster_6 MYB96:MA2030.1:JASPAR 0.783 0.460 7.775 0.896 0.89820 10 17 10 17 0.5882 1.0000 0.5882 D -4 wwCAACTAww ....mCCAACTACC... 51 101 10 25 41 45.6000 41
cluster_6 AtMYB99_II_AtMYB99_II_AthaMYB cluster_6 AtMYB99_II:AtMYB99_II:AthaMYB 0.810 0.648 0.048 0.900 0.88811 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAMCWACY 26 25 105 46 36 47.6000 42
cluster_6 AtMYB103_II_AtMYB103_II_AthaMYB cluster_6 AtMYB103_II:AtMYB103_II:AthaMYB 0.805 0.644 0.051 0.897 0.88634 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAMCWAMY 29 27 90 53 40 47.8000 43
cluster_6 AtMYB13_II_AtMYB13_II_AthaMYB cluster_6 AtMYB13_II:AtMYB13_II:AthaMYB 0.813 0.650 0.048 0.899 0.88787 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww CAMCWACC 23 24 113 48 37 49.0000 44
cluster_6 MYB80_MA1778.2_JASPAR cluster_6 MYB80:MA1778.2:JASPAR 0.730 0.609 7.115 0.883 0.89177 10 12 10 12 0.8333 1.0000 0.8333 D 0 wwCAACTAww tyyACCTAmy.. 89 50 16 35 55 49.0000 45
cluster_6 AtMYB105_I_AtMYB105_I_AthaMYB cluster_6 AtMYB105_I:AtMYB105_I:AthaMYB 0.784 0.627 0.531 0.887 0.88122 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACWDDW 48 39 50 63 51 50.2000 46
cluster_6 AtMYB49_II_AtMYB49_II_AthaMYB cluster_6 AtMYB49_II:AtMYB49_II:AthaMYB 0.794 0.635 0.246 0.892 0.88377 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACYAMY 42 35 73 58 46 50.8000 47
cluster_6 AtMYB40_II_AtMYB40_II_AthaMYB cluster_6 AtMYB40_II:AtMYB40_II:AthaMYB 0.787 0.629 0.273 0.888 0.88184 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACYAVY 45 36 67 62 50 52.0000 48
cluster_6 AtMYB102_I_AtMYB102_I_AthaMYB cluster_6 AtMYB102_I:AtMYB102_I:AthaMYB 0.786 0.629 0.250 0.890 0.88279 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACTKWW 46 37 72 61 49 53.0000 49
cluster_6 AtMYB35_II_AtMYB35_II_AthaMYB cluster_6 AtMYB35_II:AtMYB35_II:AthaMYB 0.799 0.639 0.051 0.891 0.88327 10 8 8 10 0.8000 0.8000 1.0000 R 2 ..CAACTAww YAACWASY 37 33 90 59 47 53.2000 50 
 Host name	rsat
 Job started	2026-01-09.163959
 Job done	2026-01-09.164029
 Seconds	9.92
	user	9.92
	system	2.32
	cuser	14.17
;	csystem	4.43