/var/www/html/rsat/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices.tab 
 compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices.tab
 Program version       	1.118
 Slow mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices_query_matrices.transfac
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices_index.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.164554_V2l9cC/compare-matrices_query_matrices.transfac
		file1	1	16	218	awkkmCACGTGTCcww
	file2	3346 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5		awmAGTTr
		file2		2		8		3		rkTAGTTr
		file2		3		8		5		wamaGTTr
		file2		4		8		1		GTTAGTTA
		file2		5		8		2		kwCwGTTr
		file2		6		8		2		GTTAGTTr
		file2		7		8		6		wwmaGTTr
		file2		8		8		2		rsTkGTTr
		file2		9		8		8		RkTwGKTr
		file2		10		8		1		TACTGTTG
		file2		11		8		4		WhhWGTTr
		...	3336 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	9	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	10	w1           	Width of the first matrix
	11	w2           	Width of the second matrix
	12	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	13	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	14	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	15	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	16	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	17	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	18	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	19	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	20	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	21	rcor         	Matching rank for cor
	22	rNcor        	Matching rank for Ncor
	23	rlogoDP      	Matching rank for logoDP
	24	rNsEucl      	Matching rank for NsEucl
	25	rNSW         	Matching rank for NSW
	26	rank_mean    	Mean of the matching ranks on all selected metrics
	27	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NSW NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank
cluster_2 DPBF3_MA1338.2_JASPAR cluster_2 DPBF3:MA1338.2:JASPAR 0.936 0.881 6.759 0.978 0.96265 16 17 16 17 0.9412 1.0000 0.9412 D -1 awkkmCACGTGTCcww .wwtGmCACGTGkCmww 27 2 54 3 16 20.4000 1
cluster_2 HY5_MA0551.1_JASPAR cluster_2 HY5:MA0551.1:JASPAR 0.905 0.905 7.124 0.966 0.95357 16 16 16 16 1.0000 1.0000 1.0000 D 0 awkkmCACGTGTCcww wwtGmCACGTGkCaww 54 1 28 15 36 26.8000 2
cluster_2 DPBF3_MA1338.3_JASPAR cluster_2 DPBF3:MA1338.3:JASPAR 0.944 0.649 6.752 0.972 0.94914 16 11 11 16 0.6875 0.6875 1.0000 D 2 ..kkmCACGTGTC... tGmCACGTGkC 22 29 55 25 22 30.6000 3
cluster_2 bZIP3_2_EEAD0133_EEADannot cluster_2 bZIP3_2:EEAD0133:EEADannot 0.919 0.632 7.188 0.961 0.94071 16 11 11 16 0.6875 0.6875 1.0000 D 3 ...kmCACGTGTCc.. kmCACGTGkCa 38 37 24 44 46 37.8000 4
cluster_2 LOC_Os05g36160_M0329_1.02_CISBP cluster_2 LOC_Os05g36160:M0329_1.02:CISBP 0.983 0.492 7.276 0.987 0.96011 16 8 8 16 0.5000 0.5000 1.0000 R 4 ....mCACGTGT.... MCACGTGK 3 162 17 6 5 38.6000 5
cluster_2 Os05g0437700_MA2401.1_JASPAR cluster_2 Os05g0437700:MA2401.1:JASPAR 0.984 0.492 7.181 0.988 0.96096 16 8 8 16 0.5000 0.5000 1.0000 D 4 ....mCACGTGT.... mCACGTGk 1 160 26 4 3 38.8000 6
cluster_2 BZR1_MA0550.1_JASPAR cluster_2 BZR1:MA0550.1:JASPAR 0.893 0.781 6.575 0.964 0.94926 16 14 14 16 0.8750 0.8750 1.0000 D 1 .wkkmCACGTGTCcw. mmkmCACGTGdvmm 65 4 63 24 39 39.0000 7
cluster_2 bZIP53:bZIP63_2_EEAD0129_EEADannot cluster_2 bZIP53:bZIP63_2:EEAD0129:EEADannot 0.919 0.632 7.070 0.963 0.94180 16 11 11 16 0.6875 0.6875 1.0000 D 3 ...kmCACGTGTCc.. kmCACGTGkCa 39 38 33 42 45 39.4000 8
cluster_2 OJ1058_MA1033.1_JASPAR cluster_2 OJ1058:MA1033.1:JASPAR 0.984 0.492 7.127 0.988 0.96083 16 8 8 16 0.5000 0.5000 1.0000 R 4 ....mCACGTGT.... MCACGTGK 2 161 27 5 4 39.8000 9
cluster_2 NAC072_UN0821.1_JASPAR cluster_2 NAC072:UN0821.1:JASPAR 0.959 0.599 4.823 0.982 0.95711 16 10 10 16 0.6250 0.6250 1.0000 R 3 ...kmCACGTGTC... GACACGTGTC 15 52 110 11 11 39.8000 10
cluster_2 HY5_MA0551.2_JASPAR cluster_2 HY5:MA0551.2:JASPAR 0.910 0.682 7.121 0.956 0.93959 16 12 12 16 0.7500 0.7500 1.0000 D 2 ..kkmCACGTGTCc.. tGmCACGTGkCa 50 18 29 45 58 40.0000 11
cluster_2 ABI5_M0261_1.02_CISBP cluster_2 ABI5:M0261_1.02:CISBP 0.962 0.601 3.496 0.983 0.95928 16 10 10 16 0.6250 0.6250 1.0000 R 4 ....mCACGTGTCc.. MCACGTGKCV 11 49 131 8 7 41.2000 12
cluster_2 ABI5_MA0931.1_JASPAR cluster_2 ABI5:MA0931.1:JASPAR 0.962 0.601 3.501 0.983 0.95899 16 10 10 16 0.6250 0.6250 1.0000 R 4 ....mCACGTGTCc.. MCACGTGKCV 13 50 129 9 8 41.8000 13
cluster_2 bHLH34.DAP_M0166_AthalianaCistrome cluster_2 bHLH34.DAP:M0166:AthalianaCistrome 0.901 0.627 6.003 0.972 0.95825 16 23 16 23 0.6957 1.0000 0.6957 D -3 awkkmCACGTGTCcww ...rwwgrCACGTGycarc.... 62 41 79 10 21 42.6000 14
cluster_2 BPE_MA1359.2_JASPAR cluster_2 BPE:MA1359.2:JASPAR 0.870 0.761 6.915 0.957 0.94489 16 14 14 16 0.8750 0.8750 1.0000 D 1 .wkkmCACGTGTCcw. rwgcCACGTGgcay 95 5 43 32 55 46.0000 15
cluster_2 LOC_Os02g49560_M0327_1.02_CISBP cluster_2 LOC_Os02g49560:M0327_1.02:CISBP 0.911 0.626 6.218 0.965 0.94339 16 11 11 16 0.6875 0.6875 1.0000 D 2 ..kkmCACGTGTC... tkcCACGTGwy 49 42 72 37 37 47.4000 16
cluster_2 BIM2_MA0965.2_JASPAR cluster_2 BIM2:MA0965.2:JASPAR 0.857 0.857 6.510 0.959 0.94955 16 16 16 16 1.0000 1.0000 1.0000 D 0 awkkmCACGTGTCcww wwwgkCACGTGmcwww 106 3 66 23 53 50.2000 17
cluster_2 1500010105_M0364_1.02_CISBP cluster_2 1500010105:M0364_1.02:CISBP 0.928 0.580 4.984 0.970 0.94515 16 10 10 16 0.6250 0.6250 1.0000 D 1 .wkkmCACGTG..... wyGCCACGTG 30 62 102 31 27 50.4000 18
cluster_2 PIF3_PIF3_1__Athamap cluster_2 PIF3:PIF3:1)(Athamap 0.848 0.754 7.372 0.947 0.94252 16 18 16 18 0.8889 1.0000 0.8889 R -1 awkkmCACGTGTCcww .GWSKYCACGTGKCCYM. 121 6 12 40 81 52.0000 19
cluster_2 GLYMA-13G317000_UN0421.1_JASPAR cluster_2 GLYMA-13G317000:UN0421.1:JASPAR 0.930 0.581 4.240 0.970 0.94516 16 10 10 16 0.6250 0.6250 1.0000 R 4 ....mCACGTGTCc.. MCACGTGTCW 29 59 120 30 26 52.8000 20
cluster_2 bZIP1_2_EEAD0093_EEADannot cluster_2 bZIP1_2:EEAD0093:EEADannot 0.904 0.621 7.246 0.950 0.93262 16 11 11 16 0.6875 0.6875 1.0000 D 2 ..kkmCACGTGTC... TGmCACGTGkm 57 43 19 74 73 53.2000 21
cluster_2 TZP1_EEAD0061_EEADannot cluster_2 TZP1:EEAD0061:EEADannot 0.974 0.487 6.536 0.980 0.95050 16 8 8 16 0.5000 0.5000 1.0000 D 3 ...kmCACGTG..... GmCACGTG 7 171 64 22 13 55.4000 22
cluster_2 ABF3_MA0930.2_JASPAR cluster_2 ABF3:MA0930.2:JASPAR 0.925 0.578 4.475 0.969 0.94426 16 10 10 16 0.6250 0.6250 1.0000 D 5 .....CACGTGTCcw. caCGTGtCww 33 65 117 35 30 56.0000 23
cluster_2 NFYB2_UN0689.1_JASPAR cluster_2 NFYB2:UN0689.1:JASPAR 0.927 0.580 3.937 0.969 0.94414 16 10 10 16 0.6250 0.6250 1.0000 R 4 ....mCACGTGTCc.. MYACGTGTMW 31 64 122 36 31 56.8000 24
cluster_2 GLYMA-08G357600_UN0420.1_JASPAR cluster_2 GLYMA-08G357600:UN0420.1:JASPAR 0.919 0.574 4.916 0.966 0.94197 16 10 10 16 0.6250 0.6250 1.0000 D 5 .....CACGTGTCcw. yaCGTGTCwh 40 68 103 41 35 57.4000 25
cluster_2 ABF2_MA0941.1_JASPAR cluster_2 ABF2:MA0941.1:JASPAR 0.924 0.751 0.369 0.974 0.95561 16 13 13 16 0.8125 0.8125 1.0000 R 3 ...kmCACGTGTCcww AMCACGTGTYRTG 34 7 216 12 18 57.4000 26
cluster_2 ATAREB1_M0256_1.02_CISBP cluster_2 ATAREB1:M0256_1.02:CISBP 0.923 0.750 0.370 0.974 0.95548 16 13 13 16 0.8125 0.8125 1.0000 R 3 ...kmCACGTGTCcww AMCACGTGTYRTG 35 8 215 13 19 58.0000 27
cluster_2 ABF1_M0257_1.02_CISBP cluster_2 ABF1:M0257_1.02:CISBP 0.937 0.644 0.392 0.971 0.94891 16 11 11 16 0.6875 0.6875 1.0000 R 3 ...kmCACGTGTCc.. VMCACGTGTHC 24 31 211 26 23 63.0000 28
cluster_2 ABI5_MA0931.2_JASPAR cluster_2 ABI5:MA0931.2:JASPAR 0.975 0.488 3.498 0.987 0.95938 16 8 8 16 0.5000 0.5000 1.0000 R 5 .....CACGTGTC... CACGTGKC 6 170 130 7 6 63.8000 29
cluster_2 BIM2.ampDAP_M0156_AthalianaCistrome cluster_2 BIM2.ampDAP:M0156:AthalianaCistrome 0.937 0.429 6.778 0.975 0.95189 16 19 11 24 0.4583 0.6875 0.5789 D -8 awkkmCACGTG..... ........wrwgkCACGTG 23 216 53 16 17 65.0000 30
cluster_2 ABF2.DAP_M0217_AthalianaCistrome cluster_2 ABF2.DAP:M0217:AthalianaCistrome 0.849 0.671 6.585 0.945 0.93950 16 18 15 19 0.7895 0.9375 0.8333 D -3 awkkmCACGTGTCcw. ...wwTGMCACGTswccw 119 23 61 46 88 67.4000 31
cluster_2 Transcription_5gnj_AB_3D-footprint cluster_2 Transcription:5gnj_AB:3D-footprint 0.948 0.474 6.833 0.969 0.93791 16 8 8 16 0.5000 0.5000 1.0000 D 3 ...kmCACGTG..... taCACGTG 20 187 50 55 28 68.0000 32
cluster_2 ABF3_M0267_1.02_CISBP cluster_2 ABF3:M0267_1.02:CISBP 0.952 0.476 7.070 0.964 0.93274 16 8 8 16 0.5000 0.5000 1.0000 D 4 ....mCACGTGT.... ACACGTGT 18 184 32 71 40 69.0000 33
cluster_2 ABF3_MA0930.1_JASPAR cluster_2 ABF3:MA0930.1:JASPAR 0.952 0.476 7.071 0.964 0.93273 16 8 8 16 0.5000 0.5000 1.0000 D 4 ....mCACGTGT.... ACACGTGT 18 184 31 72 41 69.2000 34
cluster_2 AT1G01260_M0150_1.02_CISBP cluster_2 AT1G01260:M0150_1.02:CISBP 0.936 0.468 7.276 0.964 0.93268 16 8 8 16 0.5000 0.5000 1.0000 D 4 ....mCACGTGT.... sCACGTGk 25 191 16 73 42 69.4000 35
cluster_2 BHLH74_MA1360.2_JASPAR cluster_2 BHLH74:MA1360.2:JASPAR 0.824 0.721 7.082 0.942 0.93591 16 14 14 16 0.8750 0.8750 1.0000 R 1 .wkkmCACGTGTCcw. DWRBCACGTGVBWM 149 10 30 64 101 70.8000 36
cluster_2 bZIP2_2_EEAD0097_EEADannot cluster_2 bZIP2_2:EEAD0097:EEADannot 0.945 0.472 6.217 0.971 0.93944 16 8 8 16 0.5000 0.5000 1.0000 D 3 ...kmCACGTG..... kmCACGTs 21 189 73 47 25 71.0000 37
cluster_2 PIF4_MA0561.1_JASPAR cluster_2 PIF4:MA0561.1:JASPAR 0.970 0.485 2.598 0.981 0.95107 16 8 8 16 0.5000 0.5000 1.0000 R 3 ...kmCACGTG..... GSCACGTG 9 173 144 18 12 71.2000 38
cluster_2 bHLH69_MA1363.1_JASPAR cluster_2 bHLH69:MA1363.1:JASPAR 0.903 0.497 6.930 0.959 0.93932 16 15 11 20 0.5500 0.6875 0.7333 D -4 awkkmCACGTG..... ....ykwbgCACGTG 59 157 42 48 52 71.6000 39
cluster_2 BHLH91_MYC2B_Mo17_1_EEAD0235_EEADannot cluster_2 BHLH91_MYC2B_Mo17_1:EEAD0235:EEADannot 0.906 0.498 5.389 0.967 0.94534 16 15 11 20 0.5500 0.6875 0.7333 D -4 awkkmCACGTG..... ....wkwaaCAYGTG 53 155 92 28 32 72.0000 40
cluster_2 PIF3_MA0560.2_JASPAR cluster_2 PIF3:MA0560.2:JASPAR 0.960 0.420 6.698 0.973 0.93740 16 7 7 16 0.4375 0.4375 1.0000 D 4 ....mCACGTG..... CCACGTG 14 224 58 59 20 75.0000 41
cluster_2 ABF3_MA0930.3_JASPAR cluster_2 ABF3:MA0930.3:JASPAR 0.968 0.423 4.447 0.983 0.95088 16 7 7 16 0.4375 0.4375 1.0000 D 6 ......ACGTGTC... aCGTGtC 10 222 118 19 9 75.6000 42
cluster_2 GLYMA-08G357600_UN0420.2_JASPAR cluster_2 GLYMA-08G357600:UN0420.2:JASPAR 0.962 0.421 4.894 0.979 0.94546 16 7 7 16 0.4375 0.4375 1.0000 D 6 ......ACGTGTC... aCGTGTC 12 223 104 27 14 76.0000 43
cluster_2 bZIP1:bZIP9_2_EEAD0107_EEADannot cluster_2 bZIP1:bZIP9_2:EEAD0107:EEADannot 0.913 0.628 0.565 0.958 0.93850 16 11 11 16 0.6875 0.6875 1.0000 R 3 ...kmCACGTGTCc.. KMCACGTGKCA 47 39 192 52 54 76.8000 44
cluster_2 BZR2_MA0549.2_JASPAR cluster_2 BZR2:MA0549.2:JASPAR 0.913 0.571 2.308 0.961 0.93737 16 10 10 16 0.6250 0.6250 1.0000 R 2 ..kkmCACGTGT.... BSMCACGTGY 46 73 154 60 51 76.8000 45
cluster_2 bHLH74_MA1360.1_JASPAR cluster_2 bHLH74:MA1360.1:JASPAR 0.809 0.617 6.945 0.944 0.94096 16 21 16 21 0.7619 1.0000 0.7619 D -4 awkkmCACGTGTCcww ....arwrkCACGTGmsayc. 167 44 40 43 95 77.8000 46
cluster_2 bHLH77_MA1362.2_JASPAR cluster_2 bHLH77:MA1362.2:JASPAR 0.848 0.636 6.887 0.942 0.93033 16 12 12 16 0.7500 0.7500 1.0000 D 0 awkkmCACGTGT.... kwdgbCACGTGm 122 35 46 82 104 77.8000 47
cluster_2 ABF1_MA0570.2_JASPAR cluster_2 ABF1:MA0570.2:JASPAR 0.903 0.678 0.271 0.961 0.94284 16 12 12 16 0.7500 0.7500 1.0000 R 0 awkkmCACGTGT.... WWTGMCACGTGT 58 19 225 39 50 78.2000 48
cluster_2 PIF1_MA0552.1_JASPAR cluster_2 PIF1:MA0552.1:JASPAR 0.904 0.603 0.383 0.963 0.94465 16 14 12 18 0.6667 0.7500 0.8571 R 4 ....mCACGTGTCcww CCACGTGWCCYY.. 56 48 212 33 43 78.4000 49
cluster_2 SPT_MA1061.2_JASPAR cluster_2 SPT:MA1061.2:JASPAR 0.958 0.419 4.885 0.979 0.94465 16 7 7 16 0.4375 0.4375 1.0000 D 4 ....mCACGTG..... sCACGTG 16 225 107 34 15 79.4000 50 
 Host name	rsat
 Job started	2026-01-09.164554
 Job done	2026-01-09.164659
 Seconds	17.25
	user	17.26
	system	6.14
	cuser	32.55
;	csystem	9.07