/var/www/html/rsat/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices.tab 
 compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices.tab
 Program version       	1.118
 Slow mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices_query_matrices.transfac
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173032_9pt1Dj/compare-matrices_query_matrices.transfac
		file1	1	12	202	wwGACTTGTGww
	file2	3346 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5		awmAGTTr
		file2		2		8		3		rkTAGTTr
		file2		3		8		5		wamaGTTr
		file2		4		8		1		GTTAGTTA
		file2		5		8		2		kwCwGTTr
		file2		6		8		2		GTTAGTTr
		file2		7		8		6		wwmaGTTr
		file2		8		8		2		rsTkGTTr
		file2		9		8		8		RkTwGKTr
		file2		10		8		1		TACTGTTG
		file2		11		8		4		WhhWGTTr
		...	3336 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	9	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	10	w1           	Width of the first matrix
	11	w2           	Width of the second matrix
	12	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	13	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	14	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	15	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	16	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	17	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	18	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	19	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	20	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	21	rcor         	Matching rank for cor
	22	rNcor        	Matching rank for Ncor
	23	rlogoDP      	Matching rank for logoDP
	24	rNsEucl      	Matching rank for NsEucl
	25	rNSW         	Matching rank for NSW
	26	rank_mean    	Mean of the matching ranks on all selected metrics
	27	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NSW NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank
cluster_3 NAC68_MA2051.1_JASPAR cluster_3 NAC68:MA2051.1:JASPAR 0.841 0.711 2.812 0.937 0.92426 12 12 11 13 0.8462 0.9167 0.9167 R -1 wwGACTTGTGw. .WWTACTTGTWW 6 1 37 3 4 10.2000 1
cluster_3 NAC68_MA2051.2_JASPAR cluster_3 NAC68:MA2051.2:JASPAR 0.886 0.591 2.809 0.942 0.91466 12 8 8 12 0.6667 0.6667 1.0000 R 1 .wGACTTGT... WTACTTGT 2 3 38 7 2 10.4000 2
cluster_3 NAC12_Mo17_1_EEAD0468_EEADannot cluster_3 NAC12_Mo17_1:EEAD0468:EEADannot 0.793 0.467 3.542 0.919 0.90987 12 15 10 17 0.5882 0.8333 0.6667 D 2 ..GACTTGTGww kaCTTGykcw..... 17 29 34 13 15 21.6000 3
cluster_3 NAC038_MA2033.2_JASPAR cluster_3 NAC038:MA2033.2:JASPAR 0.795 0.437 3.973 0.924 0.91703 12 19 11 20 0.5500 0.9167 0.5789 R 1 .wGACTTGTGww TWACTTGTGWT........ 16 51 28 6 11 22.4000 4
cluster_3 NAC031_MA2045.2_JASPAR cluster_3 NAC031:MA2045.2:JASPAR 0.793 0.436 3.543 0.925 0.91730 12 19 11 20 0.5500 0.9167 0.5789 R 1 .wGACTTGTGww TWACTTGTDWT........ 18 52 33 5 10 23.6000 5
cluster_3 NAC058_MA0938.3_JASPAR cluster_3 NAC058:MA0938.3:JASPAR 0.774 0.426 3.849 0.916 0.91256 12 19 11 20 0.5500 0.9167 0.5789 R 1 .wGACTTGTGww TTWCTTGTGWC........ 23 61 30 8 16 27.6000 6
cluster_3 NAC69_MA2018.1_JASPAR cluster_3 NAC69:MA2018.1:JASPAR 0.753 0.637 1.758 0.901 0.90495 12 12 11 13 0.8462 0.9167 0.9167 R -1 wwGACTTGTGw. .WTGCCTTGTKW 31 2 66 19 27 29.0000 7
cluster_3 NAC68_UN0378.1_JASPAR cluster_3 NAC68:UN0378.1:JASPAR 0.837 0.419 1.538 0.943 0.93135 12 24 12 24 0.5000 1.0000 0.5000 R -1 wwGACTTGTGww .WTAACTTGTGWW........... 7 69 69 1 1 29.4000 8
cluster_3 NAC12_B73_1_m1_EEAD0467_EEADannot cluster_3 NAC12_B73_1_m1:EEAD0467:EEADannot 0.796 0.422 3.366 0.919 0.90501 12 14 9 17 0.5294 0.7500 0.6429 D 3 ...ACTTGTGww rCTTGyksw..... 15 66 35 18 14 29.6000 9
cluster_3 WRKY64_B73_1_m1_EEAD0542_EEADannot cluster_3 WRKY64_B73_1_m1:EEAD0542:EEADannot 0.748 0.481 4.632 0.874 0.88175 12 11 9 14 0.6429 0.7500 0.8182 D -2 wwGACTTGT... ..TTGACTTTt 35 15 19 38 42 29.8000 10
cluster_3 WRKY82_Mo17_1_EEAD0545_EEADannot cluster_3 WRKY82_Mo17_1:EEAD0545:EEADannot 0.762 0.490 5.875 0.862 0.87597 12 11 9 14 0.6429 0.7500 0.8182 D -2 wwGACTTGT... ..TTGACTTTT 27 13 5 48 57 30.0000 11
cluster_3 WRKY55_MA1305.2_JASPAR cluster_3 WRKY55:MA1305.2:JASPAR 0.841 0.420 4.126 0.908 0.88526 12 9 7 14 0.5000 0.5833 0.7778 D -2 wwGACTT..... ..TTGACTt 5 68 26 33 20 30.4000 12
cluster_3 NTM1.DAP_M0646_AthalianaCistrome cluster_3 NTM1.DAP:M0646:AthalianaCistrome 0.808 0.404 4.280 0.923 0.90736 12 15 9 18 0.5000 0.7500 0.6000 D 3 ...ACTTGTGww aCTTsttym...... 13 88 24 16 12 30.6000 13
cluster_3 ANAC004.DAP_M0664_AthalianaCistrome cluster_3 ANAC004.DAP:M0664:AthalianaCistrome 0.817 0.432 1.477 0.925 0.90873 12 14 9 17 0.5294 0.7500 0.6429 R 3 ...ACTTGTGww ACTTRYWRA..... 11 54 71 14 9 31.8000 14
cluster_3 ANAC050.DAP_M0650_AthalianaCistrome cluster_3 ANAC050.DAP:M0650:AthalianaCistrome 0.760 0.492 0.333 0.912 0.91064 12 16 11 17 0.6471 0.9167 0.6875 R 1 .wGACTTGTGww TWACKTGYDWY..... 28 12 90 12 17 31.8000 15
cluster_3 NAC69_MA2018.2_JASPAR cluster_3 NAC69:MA2018.2:JASPAR 0.792 0.528 1.750 0.891 0.88339 12 8 8 12 0.6667 0.6667 1.0000 R 1 .wGACTTGT... TGCCTTGT 20 8 67 34 32 32.2000 16
cluster_3 NAC010_MA2009.2_JASPAR cluster_3 NAC010:MA2009.2:JASPAR 0.771 0.440 0.691 0.921 0.91863 12 21 12 21 0.5714 1.0000 0.5714 R -1 wwGACTTGTGww .GTWACTTGTGBM........ 25 49 76 4 13 33.4000 17
cluster_3 WRKY50.ampDAP_M0824_AthalianaCistrome cluster_3 WRKY50.ampDAP:M0824:AthalianaCistrome 0.744 0.478 1.993 0.882 0.88552 12 11 9 14 0.6429 0.7500 0.8182 R -2 wwGACTTGT... ..TTGACTTTT 38 16 45 32 36 33.4000 18
cluster_3 NF_CO_EEAD0014_EEADannot cluster_3 NF_CO:EEAD0014:EEADannot 0.831 0.447 0.180 0.934 0.90281 12 8 7 13 0.5385 0.5833 0.8750 R 5 .....TTGTGww TTGTGGT. 9 45 99 20 7 36.0000 19
cluster_3 AT3G42860_UN0354.2_JASPAR cluster_3 AT3G42860:UN0354.2:JASPAR 0.845 0.423 1.727 0.912 0.88763 12 9 7 14 0.5000 0.5833 0.7778 R -2 wwGACTT..... ..TTGACTT 4 64 68 28 18 36.4000 20
cluster_3 ANAC103.DAP_M0676_AthalianaCistrome cluster_3 ANAC103.DAP:M0676:AthalianaCistrome 0.729 0.416 4.656 0.906 0.91150 12 21 12 21 0.5714 1.0000 0.5714 D -1 wwGACTTGTGww .rwAACTTGbkgw........ 60 72 18 10 22 36.4000 21
cluster_3 WRKY43_MA1086.2_JASPAR cluster_3 WRKY43:MA1086.2:JASPAR 0.847 0.423 0.313 0.939 0.89889 12 6 6 12 0.5000 0.5000 1.0000 R 0 wwGACT...... TTGACY 3 63 94 23 3 37.2000 22
cluster_3 ANAC103.ampDAP_M0691_AthalianaCistrome cluster_3 ANAC103.ampDAP:M0691:AthalianaCistrome 0.721 0.541 0.696 0.905 0.91085 12 16 12 16 0.7500 1.0000 0.7500 R 0 wwGACTTGTGww RWAACTTGKKGW.... 71 7 75 11 23 37.4000 23
cluster_3 WRKY50_MA1317.2_JASPAR cluster_3 WRKY50:MA1317.2:JASPAR 0.747 0.560 5.588 0.856 0.87356 12 9 9 12 0.7500 0.7500 1.0000 D 0 wwGACTTGT... TTGACTTTT 37 5 7 63 77 37.8000 24
cluster_3 ANAC050.ampDAP_M0644_AthalianaCistrome cluster_3 ANAC050.ampDAP:M0644:AthalianaCistrome 0.731 0.430 4.244 0.896 0.89789 12 15 10 17 0.5882 0.8333 0.6667 D 2 ..GACTTGTGww TaCTTGkrda..... 57 57 25 24 29 38.4000 25
cluster_3 NAC010_UN0371.1_JASPAR cluster_3 NAC010:UN0371.1:JASPAR 0.804 0.402 0.684 0.934 0.92593 12 24 12 24 0.5000 1.0000 0.5000 R 0 wwGACTTGTGww RWAACTTGTGHH............ 14 95 77 2 6 38.8000 26
cluster_3 AT1G19040.DAP_M0704_AthalianaCistrome cluster_3 AT1G19040.DAP:M0704:AthalianaCistrome 0.713 0.461 4.292 0.896 0.90259 12 16 11 17 0.6471 0.9167 0.6875 D 1 .wGACTTGTGww wwrCTTGsrgm..... 88 34 23 21 30 39.2000 27
cluster_3 WRKY11_MA1306.2_JASPAR cluster_3 WRKY11:MA1306.2:JASPAR 0.734 0.472 4.974 0.860 0.87513 12 11 9 14 0.6429 0.7500 0.8182 D -2 wwGACTTGT... ..TTGACTTTt 48 22 14 52 61 39.4000 28
cluster_3 LEC1-A_UN0423.1_JASPAR cluster_3 LEC1-A:UN0423.1:JASPAR 0.705 0.588 3.790 0.872 0.88706 12 10 10 12 0.8333 0.8333 1.0000 R 0 wwGACTTGTG.. KMCACTTGTH 96 4 31 30 43 40.8000 29
cluster_3 NAC057_MA2034.2_JASPAR cluster_3 NAC057:MA2034.2:JASPAR 0.793 0.462 1.874 0.888 0.87348 12 7 7 12 0.5833 0.5833 1.0000 R 1 .wGACTTG.... TTACTTG 19 31 56 65 34 41.0000 30
cluster_3 WRKY40_MA1085.3_JASPAR cluster_3 WRKY40:MA1085.3:JASPAR 0.890 0.445 0.305 0.909 0.87701 12 6 6 12 0.5000 0.5000 1.0000 R 0 wwGACT...... TTGACT 1 47 96 42 19 41.0000 31
cluster_3 WRKY57_MA1089.2_JASPAR cluster_3 WRKY57:MA1089.2:JASPAR 0.834 0.417 0.308 0.927 0.88975 12 6 6 12 0.5000 0.5000 1.0000 R 0 wwGACT...... TTGACY 8 71 95 26 8 41.6000 32
cluster_3 WRKY51_MA2368.1_JASPAR cluster_3 WRKY51:MA2368.1:JASPAR 0.820 0.410 0.338 0.936 0.89632 12 6 6 12 0.5000 0.5000 1.0000 R 0 wwGACT...... TTGACY 10 80 89 25 5 41.8000 33
cluster_3 NAC057_MA2034.1_JASPAR cluster_3 NAC057:MA2034.1:JASPAR 0.713 0.549 1.889 0.877 0.88924 12 11 10 13 0.7692 0.8333 0.9091 R -1 wwGACTTGTG.. .RTTACTTGTW 85 6 55 27 39 42.4000 34
cluster_3 NAC103_MA2038.2_JASPAR cluster_3 NAC103:MA2038.2:JASPAR 0.776 0.453 2.265 0.878 0.86812 12 7 7 12 0.5833 0.5833 1.0000 R 1 .wGACTTG.... TAACTTG 22 42 39 81 38 44.4000 35
cluster_3 WRKY26_MA1297.2_JASPAR cluster_3 WRKY26:MA1297.2:JASPAR 0.729 0.468 1.974 0.865 0.87767 12 11 9 14 0.6429 0.7500 0.8182 R -2 wwGACTTGT... ..TTGACTTTT 61 27 50 39 49 45.2000 36
cluster_3 fgenesh1_pg.C_Chr_07.0001000033_M0366_1.02_CISBP cluster_3 fgenesh1_pg.C_Chr_07.0001000033:M0366_1.02:CISBP 0.718 0.431 3.548 0.886 0.88758 12 12 9 15 0.6000 0.7500 0.7500 D -3 wwGACTTGT... ...cTSACGTgk 77 55 32 29 35 45.6000 37
cluster_3 NAC028_MA1427.3_JASPAR cluster_3 NAC028:MA1427.3:JASPAR 0.785 0.458 1.823 0.881 0.86940 12 7 7 12 0.5833 0.5833 1.0000 R 1 .wGACTTG.... TTACTTG 21 38 60 80 37 47.2000 38
cluster_3 NAC096_MA2037.2_JASPAR cluster_3 NAC096:MA2037.2:JASPAR 0.773 0.451 2.135 0.875 0.86628 12 7 7 12 0.5833 0.5833 1.0000 R 1 .wGACTTG.... TTACTTG 24 43 40 88 41 47.2000 39
cluster_3 WRKY71_MA1316.1_JASPAR cluster_3 WRKY71:MA1316.1:JASPAR 0.736 0.473 1.980 0.858 0.87450 12 11 9 14 0.6429 0.7500 0.8182 R -2 wwGACTTGT... ..TTGACTTTT 46 21 47 56 69 47.8000 40
cluster_3 ANAC038.ampDAP_M0705_AthalianaCistrome cluster_3 ANAC038.ampDAP:M0705:AthalianaCistrome 0.712 0.407 2.997 0.907 0.91215 12 21 12 21 0.5714 1.0000 0.5714 D -1 wwGACTTGTGww .rTwaCkTrtdwy........ 91 84 36 9 21 48.2000 41
cluster_3 WRKY7_MA1313.2_JASPAR cluster_3 WRKY7:MA1313.2:JASPAR 0.736 0.473 5.790 0.848 0.86986 12 11 9 14 0.6429 0.7500 0.8182 D -2 wwGACTTGT... ..TTGACTTTt 45 20 6 78 94 48.6000 42
cluster_3 NGA1_EEAD0017_EEADannot cluster_3 NGA1:EEAD0017:EEADannot 0.809 0.404 6.400 0.869 0.85252 12 6 6 12 0.5000 0.5000 1.0000 D 2 ..GACTTG.... CACTTG 12 87 1 97 47 48.8000 43
cluster_3 WRKY21.DAP_M0827_AthalianaCistrome cluster_3 WRKY21.DAP:M0827:AthalianaCistrome 0.733 0.471 2.002 0.858 0.87440 12 11 9 14 0.6429 0.7500 0.8182 R -2 wwGACTTGT... ..TTGACTTTT 52 23 42 58 71 49.2000 44
cluster_3 WRKY29_MA1298.1_JASPAR cluster_3 WRKY29:MA1298.1:JASPAR 0.723 0.465 1.996 0.862 0.87617 12 11 9 14 0.6429 0.7500 0.8182 R -2 wwGACTTGT... ..TTGACTTTT 69 30 44 47 56 49.2000 45
cluster_3 NAC92_MA1044.2_JASPAR cluster_3 NAC92:MA1044.2:JASPAR 0.724 0.483 1.453 0.875 0.87496 12 8 8 12 0.6667 0.6667 1.0000 R 1 .wGACTTGT... TGGCKTGY 68 14 72 54 40 49.6000 46
cluster_3 ANAC058.ampDAP_M0665_AthalianaCistrome cluster_3 ANAC058.ampDAP:M0665:AthalianaCistrome 0.726 0.421 1.390 0.904 0.90653 12 18 11 19 0.5789 0.9167 0.6111 R 1 .wGACTTGTGww TWACKTGTDRH....... 66 67 73 17 26 49.8000 47
cluster_3 WRKY15.DAP_M0791_AthalianaCistrome cluster_3 WRKY15.DAP:M0791:AthalianaCistrome 0.718 0.462 1.984 0.862 0.87638 12 11 9 14 0.6429 0.7500 0.8182 R -2 wwGACTTGT... ..TTGACTTTT 75 33 46 45 54 50.6000 48
cluster_3 WRKY27_MA1318.2_JASPAR cluster_3 WRKY27:MA1318.2:JASPAR 0.732 0.470 5.404 0.850 0.87088 12 11 9 14 0.6429 0.7500 0.8182 D -2 wwGACTTGT... ..TTGACTTTt 55 25 10 76 92 51.6000 49
cluster_3 WRKY15.ampDAP_M0813_AthalianaCistrome cluster_3 WRKY15.ampDAP:M0813:AthalianaCistrome 0.739 0.443 5.565 0.853 0.87226 12 12 9 15 0.6000 0.7500 0.7500 D -3 wwGACTTGT... ...TTGACTTTt 41 48 8 73 88 51.6000 50 
 Host name	rsat
 Job started	2026-01-09.173032
 Job done	2026-01-09.173103
 Seconds	11.45
	user	11.45
	system	2.2
	cuser	13.38
;	csystem	4