One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173131_9JJg0K/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/01/09/compare-matrices_2026-01-09.173131_9JJg0K/compare-matrices.tab

One-to-n matrix alignment; reference matrix: cluster_4_shift3 ; 27 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
cluster_4_shift3 (cluster_4)
; cluster_4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---wwGTGGGGAwa ; Alignment reference a 0 0 0 101 93 19 11 11 21 23 11 266 94 102 c 0 0 0 32 48 2 2 4 4 11 9 5 63 59 g 0 0 0 63 43 243 6 253 245 227 259 8 60 59 t 0 0 0 94 106 26 271 22 20 29 11 11 73 70

TCP24.ampDAP_M0768_AthalianaCistrome_shift5 (TCP24.ampDAP:M0768:AthalianaCistrome) 0.808 0.560 4.972 0.893 0.897 12 1 4 3 7 5.400 1
; cluster_4 versus TCP24.ampDAP_M0768_AthalianaCistrome (TCP24.ampDAP:M0768:AthalianaCistrome); m=1/27; ncol2=11; w=0; offset=2; strand=D; shift=5; score= 5.4; -----GTGGGGACC ; cor=0.808; Ncor=0.560; logoDP=4.972; NsEucl=0.893; NSW=0.897; rcor=12; rNcor=1; rlogoDP=4; rNsEucl=3; rNSW=7; rank_mean=5.400; match_rank=1 a 0 0 0 0 0 2 5 2 0 0 2 38 0 1 c 0 0 0 0 0 3 0 0 0 1 0 0 38 37 g 0 0 0 0 0 30 6 28 38 37 36 0 0 0 t 0 0 0 0 0 3 27 8 0 0 0 0 0 0

ARF39_EEAD0041_EEADannot_shift7 (ARF39:EEAD0041:EEADannot) 0.848 0.539 4.575 0.879 0.897 3 5 5 12 6 6.200 2
; cluster_4 versus ARF39_EEAD0041_EEADannot (ARF39:EEAD0041:EEADannot); m=2/27; ncol2=7; w=0; offset=4; strand=D; shift=7; score= 6.2; -------GGGGACA ; cor=0.848; Ncor=0.539; logoDP=4.575; NsEucl=0.879; NSW=0.897; rcor=3; rNcor=5; rlogoDP=5; rNsEucl=12; rNSW=6; rank_mean=6.200; match_rank=2 a 0 0 0 0 0 0 0 0 136 283 118 2594 0 2574 c 0 0 0 0 0 0 0 0 0 0 0 0 2573 0 g 0 0 0 0 0 0 0 2594 2458 2311 2476 0 21 20 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0

TCP17_MA1290.1_JASPAR_rc_shift5 (TCP17:MA1290.1:JASPAR_rc) 0.805 0.557 3.522 0.895 0.900 17 2 11 2 5 7.400 3
; cluster_4 versus TCP17_MA1290.1_JASPAR_rc (TCP17:MA1290.1:JASPAR_rc); m=3/27; ncol2=11; w=0; offset=2; strand=R; shift=5; score= 7.4; -----GTGGGGACC ; cor=0.805; Ncor=0.557; logoDP=3.522; NsEucl=0.895; NSW=0.900; rcor=17; rNcor=2; rlogoDP=11; rNsEucl=2; rNSW=5; rank_mean=7.400; match_rank=3 a 0 0 0 0 0 13 6 6 0 0 0 85 2 1 c 0 0 0 0 0 9 6 5 1 0 0 20 106 105 g 0 0 0 0 0 77 6 80 106 108 107 0 0 2 t 0 0 0 0 0 9 90 17 1 0 1 3 0 0

StCONSTANSlike1_EEAD0013_EEADannot_shift4 (StCONSTANSlike1:EEAD0013:EEADannot) 0.810 0.515 4.364 0.882 0.903 10 7 10 9 4 8.000 4
; cluster_4 versus StCONSTANSlike1_EEAD0013_EEADannot (StCONSTANSlike1:EEAD0013:EEADannot); m=4/27; ncol2=7; w=0; offset=1; strand=D; shift=4; score= 8; ----TGTGGTG--- ; cor=0.810; Ncor=0.515; logoDP=4.364; NsEucl=0.882; NSW=0.903; rcor=10; rNcor=7; rlogoDP=10; rNsEucl=9; rNSW=4; rank_mean=8.000; match_rank=4 a 0 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 1 0 0 0 g 0 0 0 0 1 5 0 6 5 1 5 0 0 0 t 0 0 0 0 5 1 6 0 1 5 0 0 0 0

TCP13_MA1282.2_JASPAR_shift5 (TCP13:MA1282.2:JASPAR) 0.797 0.552 4.446 0.892 0.895 18 3 8 4 8 8.200 5
; cluster_4 versus TCP13_MA1282.2_JASPAR (TCP13:MA1282.2:JASPAR); m=5/27; ncol2=11; w=0; offset=2; strand=D; shift=5; score= 8.2; -----GTGGGGACC ; cor=0.797; Ncor=0.552; logoDP=4.446; NsEucl=0.892; NSW=0.895; rcor=18; rNcor=3; rlogoDP=8; rNsEucl=4; rNSW=8; rank_mean=8.200; match_rank=5 a 0 0 0 0 0 17 6 11 0 0 0 99 0 0 c 0 0 0 0 0 9 11 9 0 0 0 21 129 130 g 0 0 0 0 0 96 7 97 129 130 130 0 0 0 t 0 0 0 0 0 8 106 13 1 0 0 10 1 0

PTF1_MA1282.1_JASPAR_shift5 (PTF1:MA1282.1:JASPAR) 0.797 0.478 4.446 0.892 0.895 18 9 8 4 8 9.400 6
; cluster_4 versus PTF1_MA1282.1_JASPAR (PTF1:MA1282.1:JASPAR); m=6/27; ncol2=13; w=0; offset=2; strand=D; shift=5; score= 9.4; -----GTGGGGACC ; cor=0.797; Ncor=0.478; logoDP=4.446; NsEucl=0.892; NSW=0.895; rcor=18; rNcor=9; rlogoDP=8; rNsEucl=4; rNSW=8; rank_mean=9.400; match_rank=6 a 0 0 0 0 0 17 6 11 0 0 0 99 0 0 c 0 0 0 0 0 9 11 9 0 0 0 21 129 130 g 0 0 0 0 0 96 7 97 129 130 130 0 0 0 t 0 0 0 0 0 8 106 13 1 0 0 10 1 0

TCP17.ampDAP_M0766_AthalianaCistrome_shift5 (TCP17.ampDAP:M0766:AthalianaCistrome) 0.793 0.549 4.481 0.891 0.894 20 4 7 6 11 9.600 7
; cluster_4 versus TCP17.ampDAP_M0766_AthalianaCistrome (TCP17.ampDAP:M0766:AthalianaCistrome); m=7/27; ncol2=11; w=0; offset=2; strand=D; shift=5; score= 9.6; -----gTGGGGACC ; cor=0.793; Ncor=0.549; logoDP=4.481; NsEucl=0.891; NSW=0.894; rcor=20; rNcor=4; rlogoDP=7; rNsEucl=6; rNSW=11; rank_mean=9.600; match_rank=7 a 0 0 0 0 0 16 7 6 2 1 1 79 0 0 c 0 0 0 0 0 9 6 3 0 0 0 3 83 83 g 0 0 0 0 0 52 5 58 80 81 82 0 0 0 t 0 0 0 0 0 6 65 16 1 1 0 1 0 0

O2DREME_EEAD0018_EEADannot_rc_shift1 (O2DREME:EEAD0018:EEADannot_rc) 0.886 0.409 1.820 0.885 0.920 2 24 19 7 2 10.800 8
; cluster_4 versus O2DREME_EEAD0018_EEADannot_rc (O2DREME:EEAD0018:EEADannot_rc); m=8/27; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score= 10.8; -TGAyGTGG----- ; cor=0.886; Ncor=0.409; logoDP=1.820; NsEucl=0.885; NSW=0.920; rcor=2; rNcor=24; rlogoDP=19; rNsEucl=7; rNSW=2; rank_mean=10.800; match_rank=8 a 0 0 0 100 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 52 0 0 0 0 0 0 0 0 0 g 0 0 100 0 0 100 0 100 100 0 0 0 0 0 t 0 100 0 0 48 0 100 0 0 0 0 0 0 0

CO-NF-trimer_EEAD0156_EEADannot_rc_shift4 (CO-NF-trimer:EEAD0156:EEADannot_rc) 0.902 0.410 0.176 0.884 0.933 1 21 27 8 1 11.600 9
; cluster_4 versus CO-NF-trimer_EEAD0156_EEADannot_rc (CO-NF-trimer:EEAD0156:EEADannot_rc); m=9/27; ncol2=5; w=0; offset=1; strand=R; shift=4; score= 11.6; ----TGTGR----- ; cor=0.902; Ncor=0.410; logoDP=0.176; NsEucl=0.884; NSW=0.933; rcor=1; rNcor=21; rlogoDP=27; rNsEucl=8; rNSW=1; rank_mean=11.600; match_rank=9 a 0 0 0 0 0 0 0 0 1 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 4 0 4 3 0 0 0 0 0 t 0 0 0 0 4 0 4 0 0 0 0 0 0 0

ASHR1.DAP_M0716_AthalianaCistrome_rc_shift3 (ASHR1.DAP:M0716:AthalianaCistrome_rc) 0.726 0.533 1.475 0.902 0.895 24 6 20 1 10 12.200 10
; cluster_4 versus ASHR1.DAP_M0716_AthalianaCistrome_rc (ASHR1.DAP:M0716:AthalianaCistrome_rc); m=10/27; ncol2=15; w=0; offset=0; strand=R; shift=3; score= 12.2; ---tgaTGGTGAwg ; cor=0.726; Ncor=0.533; logoDP=1.475; NsEucl=0.902; NSW=0.895; rcor=24; rNcor=6; rlogoDP=20; rNsEucl=1; rNSW=10; rank_mean=12.200; match_rank=10 a 0 0 0 59 67 116 0 0 2 0 0 258 70 53 c 0 0 0 48 51 38 0 0 0 0 0 0 38 40 g 0 0 0 52 97 60 0 270 268 0 270 2 50 134 t 0 0 0 111 55 56 270 0 0 270 0 10 112 43

Zm00001d034298_MA1834.2_JASPAR_rc_shift2 (Zm00001d034298:MA1834.2:JASPAR_rc) 0.825 0.413 0.664 0.881 0.915 6 20 24 11 3 12.800 11
; cluster_4 versus Zm00001d034298_MA1834.2_JASPAR_rc (Zm00001d034298:MA1834.2:JASPAR_rc); m=11/27; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score= 12.8; --CGCGTGG----- ; cor=0.825; Ncor=0.413; logoDP=0.664; NsEucl=0.881; NSW=0.915; rcor=6; rNcor=20; rlogoDP=24; rNsEucl=11; rNSW=3; rank_mean=12.800; match_rank=11 a 0 0 207 744 358 72 84 262 161 0 0 0 0 0 c 0 0 5681 401 5256 252 17 487 160 0 0 0 0 0 g 0 0 522 5039 489 6223 128 5812 6091 0 0 0 0 0 t 0 0 192 418 499 55 6373 41 190 0 0 0 0 0

DEP_UN0855.1_JASPAR_shift6 (DEP:UN0855.1:JASPAR) 0.814 0.444 5.956 0.855 0.873 7 10 1 24 22 12.800 12
; cluster_4 versus DEP_UN0855.1_JASPAR (DEP:UN0855.1:JASPAR); m=12/27; ncol2=6; w=0; offset=3; strand=D; shift=6; score= 12.8; ------TGGTGA-- ; cor=0.814; Ncor=0.444; logoDP=5.956; NsEucl=0.855; NSW=0.873; rcor=7; rNcor=10; rlogoDP=1; rNsEucl=24; rNSW=22; rank_mean=12.800; match_rank=12 a 0 0 0 0 0 0 0 0 0 0 0 1000 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 1000 1000 0 1000 0 0 0 t 0 0 0 0 0 0 1000 0 0 1000 0 0 0 0

FEM111.DAP_M0491_AthalianaCistrome_shift6 (FEM111.DAP:M0491:AthalianaCistrome) 0.814 0.444 5.956 0.855 0.873 7 10 1 24 22 12.800 13
; cluster_4 versus FEM111.DAP_M0491_AthalianaCistrome (FEM111.DAP:M0491:AthalianaCistrome); m=13/27; ncol2=6; w=0; offset=3; strand=D; shift=6; score= 12.8; ------TGGTGA-- ; cor=0.814; Ncor=0.444; logoDP=5.956; NsEucl=0.855; NSW=0.873; rcor=7; rNcor=10; rlogoDP=1; rNsEucl=24; rNSW=22; rank_mean=12.800; match_rank=13 a 0 0 0 0 0 0 0 0 0 0 0 54 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 54 54 0 54 0 0 0 t 0 0 0 0 0 0 54 0 0 54 0 0 0 0

bHLH112_MA0961.2_JASPAR_rc_shift2 (bHLH112:MA0961.2:JASPAR_rc) 0.836 0.418 2.498 0.864 0.889 4 16 15 17 13 13.000 14
; cluster_4 versus bHLH112_MA0961.2_JASPAR_rc (bHLH112:MA0961.2:JASPAR_rc); m=14/27; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score= 13; --CAAGTGG----- ; cor=0.836; Ncor=0.418; logoDP=2.498; NsEucl=0.864; NSW=0.889; rcor=4; rNcor=16; rlogoDP=15; rNsEucl=17; rNSW=13; rank_mean=13.000; match_rank=14 a 0 0 0 1000 1000 0 0 0 0 0 0 0 0 0 c 0 0 1000 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 1000 0 823 1000 0 0 0 0 0 t 0 0 0 0 0 0 1000 177 0 0 0 0 0 0

OsFBH1_MA2350.1_JASPAR_rc_shift2 (OsFBH1:MA2350.1:JASPAR_rc) 0.836 0.418 2.498 0.864 0.889 5 17 16 18 14 14.000 15
; cluster_4 versus OsFBH1_MA2350.1_JASPAR_rc (OsFBH1:MA2350.1:JASPAR_rc); m=15/27; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score= 14; --CAAGTGG----- ; cor=0.836; Ncor=0.418; logoDP=2.498; NsEucl=0.864; NSW=0.889; rcor=5; rNcor=17; rlogoDP=16; rNsEucl=18; rNSW=14; rank_mean=14.000; match_rank=15 a 0 0 0 999 999 0 0 0 0 0 0 0 0 0 c 0 0 999 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 999 0 822 999 0 0 0 0 0 t 0 0 0 0 0 0 999 177 0 0 0 0 0 0

At1g70910.DAP_M0349_AthalianaCistrome_rc_shift6 (At1g70910.DAP:M0349:AthalianaCistrome_rc) 0.809 0.515 0.288 0.873 0.887 11 8 25 13 16 14.600 16
; cluster_4 versus At1g70910.DAP_M0349_AthalianaCistrome_rc (At1g70910.DAP:M0349:AthalianaCistrome_rc); m=16/27; ncol2=7; w=0; offset=3; strand=R; shift=6; score= 14.6; ------TGGTGAk- ; cor=0.809; Ncor=0.515; logoDP=0.288; NsEucl=0.873; NSW=0.887; rcor=11; rNcor=8; rlogoDP=25; rNsEucl=13; rNSW=16; rank_mean=14.600; match_rank=16 a 0 0 0 0 0 0 0 0 0 0 0 50 12 0 c 0 0 0 0 0 0 0 0 0 0 0 0 3 0 g 0 0 0 0 0 0 0 50 50 0 50 0 16 0 t 0 0 0 0 0 0 50 0 0 50 0 0 19 0

AT2G48100_UN0843.1_JASPAR_shift6 (AT2G48100:UN0843.1:JASPAR) 0.807 0.440 5.546 0.855 0.874 15 14 3 22 20 14.800 17
; cluster_4 versus AT2G48100_UN0843.1_JASPAR (AT2G48100:UN0843.1:JASPAR); m=17/27; ncol2=6; w=0; offset=3; strand=D; shift=6; score= 14.8; ------TGGTGA-- ; cor=0.807; Ncor=0.440; logoDP=5.546; NsEucl=0.855; NSW=0.874; rcor=15; rNcor=14; rlogoDP=3; rNsEucl=22; rNSW=20; rank_mean=14.800; match_rank=17 a 0 0 0 0 0 0 0 0 0 0 0 895 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 1000 1000 0 1000 0 0 0 t 0 0 0 0 0 0 1000 0 0 1000 0 105 0 0

AGL80_UN0852.1_JASPAR_rc_shift6 (AGL80:UN0852.1:JASPAR_rc) 0.814 0.444 2.866 0.855 0.873 7 10 12 24 22 15.000 18
; cluster_4 versus AGL80_UN0852.1_JASPAR_rc (AGL80:UN0852.1:JASPAR_rc); m=18/27; ncol2=6; w=0; offset=3; strand=R; shift=6; score= 15; ------TGGTGA-- ; cor=0.814; Ncor=0.444; logoDP=2.866; NsEucl=0.855; NSW=0.873; rcor=7; rNcor=10; rlogoDP=12; rNsEucl=24; rNSW=22; rank_mean=15.000; match_rank=18 a 0 0 0 0 0 0 0 0 0 0 0 1000 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 1000 1000 0 1000 0 0 0 t 0 0 0 0 0 0 1000 0 0 1000 0 0 0 0

BHLH112_MA0961.1_JASPAR_rc_shift1 (BHLH112:MA0961.1:JASPAR_rc) 0.770 0.414 2.501 0.868 0.877 21 18 13 14 17 16.600 19
; cluster_4 versus BHLH112_MA0961.1_JASPAR_rc (BHLH112:MA0961.1:JASPAR_rc); m=19/27; ncol2=9; w=-2; offset=-2; strand=R; shift=1; score= 16.6; -gCAAGTGGs---- ; cor=0.770; Ncor=0.414; logoDP=2.501; NsEucl=0.868; NSW=0.877; rcor=21; rNcor=18; rlogoDP=13; rNsEucl=14; rNSW=17; rank_mean=16.600; match_rank=19 a 0 223 0 1000 1000 0 0 0 0 222 0 0 0 0 c 0 217 1000 0 0 0 0 0 0 306 0 0 0 0 g 0 343 0 0 0 1000 0 823 1000 250 0 0 0 0 t 0 218 0 0 0 0 1000 177 0 221 0 0 0 0

AGL55_MA1202.1_JASPAR_rc_shift6 (AGL55:MA1202.1:JASPAR_rc) 0.807 0.440 2.368 0.855 0.874 14 13 18 21 19 17.000 20
; cluster_4 versus AGL55_MA1202.1_JASPAR_rc (AGL55:MA1202.1:JASPAR_rc); m=20/27; ncol2=6; w=0; offset=3; strand=R; shift=6; score= 17; ------TGGTGA-- ; cor=0.807; Ncor=0.440; logoDP=2.368; NsEucl=0.855; NSW=0.874; rcor=14; rNcor=13; rlogoDP=18; rNsEucl=21; rNSW=19; rank_mean=17.000; match_rank=20 a 0 0 0 0 0 0 0 0 0 0 0 81 0 0 c 0 0 0 0 0 0 0 0 0 0 0 4 0 0 g 0 0 0 0 0 0 0 90 90 0 90 5 0 0 t 0 0 0 0 0 0 90 0 0 90 0 0 0 0

bhlh112_M0229_1.02_CISBP_rc_shift1 (bhlh112:M0229_1.02:CISBP_rc) 0.769 0.414 2.501 0.868 0.877 22 19 14 15 18 17.600 21
; cluster_4 versus bhlh112_M0229_1.02_CISBP_rc (bhlh112:M0229_1.02:CISBP_rc); m=21/27; ncol2=9; w=-2; offset=-2; strand=R; shift=1; score= 17.6; -gCAAGTGGs---- ; cor=0.769; Ncor=0.414; logoDP=2.501; NsEucl=0.868; NSW=0.877; rcor=22; rNcor=19; rlogoDP=14; rNsEucl=15; rNSW=18; rank_mean=17.600; match_rank=21 a 0 22 0 100 100 0 0 0 0 22 0 0 0 0 c 0 22 100 0 0 0 0 0 0 31 0 0 0 0 g 0 34 0 0 0 100 0 82 100 25 0 0 0 0 t 0 22 0 0 0 0 100 18 0 22 0 0 0 0

At2g48100.DAP_M0339_AthalianaCistrome_rc_shift6 (At2g48100.DAP:M0339:AthalianaCistrome_rc) 0.807 0.440 2.417 0.855 0.874 16 15 17 23 21 18.400 22
; cluster_4 versus At2g48100.DAP_M0339_AthalianaCistrome_rc (At2g48100.DAP:M0339:AthalianaCistrome_rc); m=22/27; ncol2=6; w=0; offset=3; strand=R; shift=6; score= 18.4; ------TGGTGA-- ; cor=0.807; Ncor=0.440; logoDP=2.417; NsEucl=0.855; NSW=0.874; rcor=16; rNcor=15; rlogoDP=17; rNsEucl=23; rNSW=21; rank_mean=18.400; match_rank=22 a 0 0 0 0 0 0 0 0 0 0 0 34 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 38 38 0 38 0 0 0 t 0 0 0 0 0 0 38 0 0 38 0 4 0 0

ABF4_MA1659.2_JASPAR_rc_shift2 (ABF4:MA1659.2:JASPAR_rc) 0.808 0.404 0.268 0.865 0.891 13 26 26 16 12 18.600 23
; cluster_4 versus ABF4_MA1659.2_JASPAR_rc (ABF4:MA1659.2:JASPAR_rc); m=23/27; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score= 18.6; --sACGTGG----- ; cor=0.808; Ncor=0.404; logoDP=0.268; NsEucl=0.865; NSW=0.891; rcor=13; rNcor=26; rlogoDP=26; rNsEucl=16; rNSW=12; rank_mean=18.600; match_rank=23 a 0 0 253 5815 200 161 73 62 155 0 0 0 0 0 c 0 0 1825 52 5470 44 47 86 62 0 0 0 0 0 g 0 0 3358 58 166 5666 20 5763 5169 0 0 0 0 0 t 0 0 610 121 210 175 5906 135 660 0 0 0 0 0

Zm00001d034298_MA1834.1_JASPAR_rc_shift0 (Zm00001d034298:MA1834.1:JASPAR_rc) 0.716 0.409 0.675 0.882 0.888 25 22 23 10 15 19.000 24
; cluster_4 versus Zm00001d034298_MA1834.1_JASPAR_rc (Zm00001d034298:MA1834.1:JASPAR_rc); m=24/27; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score= 19; ssCGCGTGGgs--- ; cor=0.716; Ncor=0.409; logoDP=0.675; NsEucl=0.882; NSW=0.888; rcor=25; rNcor=22; rlogoDP=23; rNsEucl=10; rNSW=15; rank_mean=19.000; match_rank=24 a 1276 1462 207 744 358 72 84 262 161 1494 1075 0 0 0 c 1777 1893 5681 401 5256 252 17 487 160 1597 2146 0 0 0 g 2323 1886 522 5039 489 6223 128 5812 6091 2040 2050 0 0 0 t 1226 1361 192 418 499 55 6373 41 190 1471 1331 0 0 0

BHLH168_ZmSPT2_Mo17_1_EEAD0221_EEADannot_shift0 (BHLH168_ZmSPT2_Mo17_1:EEAD0221:EEADannot) 0.715 0.409 4.510 0.863 0.850 27 25 6 19 25 20.400 25
; cluster_4 versus BHLH168_ZmSPT2_Mo17_1_EEAD0221_EEADannot (BHLH168_ZmSPT2_Mo17_1:EEAD0221:EEADannot); m=25/27; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score= 20.4; gcCACGTGGGc--- ; cor=0.715; Ncor=0.409; logoDP=4.510; NsEucl=0.863; NSW=0.850; rcor=27; rNcor=25; rlogoDP=6; rNsEucl=19; rNSW=25; rank_mean=20.400; match_rank=25 a 13 14 0 99 0 1 0 0 0 7 8 0 0 0 c 14 55 100 0 95 0 0 0 3 9 57 0 0 0 g 60 20 0 1 0 99 0 100 96 79 14 0 0 0 t 13 11 0 0 5 0 100 0 1 5 21 0 0 0

BHLH168_ZmSPT2_B73_3_m1_EEAD0220_EEADannot_rc_shift0 (BHLH168_ZmSPT2_B73_3_m1:EEAD0220:EEADannot_rc) 0.716 0.409 1.237 0.862 0.848 26 23 22 20 26 23.400 26
; cluster_4 versus BHLH168_ZmSPT2_B73_3_m1_EEAD0220_EEADannot_rc (BHLH168_ZmSPT2_B73_3_m1:EEAD0220:EEADannot_rc); m=26/27; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score= 23.4; gcCACGTGGGc--- ; cor=0.716; Ncor=0.409; logoDP=1.237; NsEucl=0.862; NSW=0.848; rcor=26; rNcor=23; rlogoDP=22; rNsEucl=20; rNSW=26; rank_mean=23.400; match_rank=26 a 11 14 0 100 0 2 0 0 0 6 10 0 0 0 c 16 55 100 0 97 0 0 0 3 7 56 0 0 0 g 60 22 0 0 0 98 0 100 97 82 15 0 0 0 t 13 9 0 0 3 0 100 0 0 5 19 0 0 0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_4_shift3 (cluster_4)													; cluster_4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---wwGTGGGGAwa ; Alignment reference a 0 0 0 101 93 19 11 11 21 23 11 266 94 102 c 0 0 0 32 48 2 2 4 4 11 9 5 63 59 g 0 0 0 63 43 243 6 253 245 227 259 8 60 59 t 0 0 0 94 106 26 271 22 20 29 11 11 73 70
TCP24.ampDAP_M0768_AthalianaCistrome_shift5 (TCP24.ampDAP:M0768:AthalianaCistrome)	0.808	0.560	4.972	0.893	0.897	12	1	4	3	7	5.400	1	; cluster_4 versus TCP24.ampDAP_M0768_AthalianaCistrome (TCP24.ampDAP:M0768:AthalianaCistrome); m=1/27; ncol2=11; w=0; offset=2; strand=D; shift=5; score= 5.4; -----GTGGGGACC ; cor=0.808; Ncor=0.560; logoDP=4.972; NsEucl=0.893; NSW=0.897; rcor=12; rNcor=1; rlogoDP=4; rNsEucl=3; rNSW=7; rank_mean=5.400; match_rank=1 a 0 0 0 0 0 2 5 2 0 0 2 38 0 1 c 0 0 0 0 0 3 0 0 0 1 0 0 38 37 g 0 0 0 0 0 30 6 28 38 37 36 0 0 0 t 0 0 0 0 0 3 27 8 0 0 0 0 0 0
ARF39_EEAD0041_EEADannot_shift7 (ARF39:EEAD0041:EEADannot)	0.848	0.539	4.575	0.879	0.897	3	5	5	12	6	6.200	2	; cluster_4 versus ARF39_EEAD0041_EEADannot (ARF39:EEAD0041:EEADannot); m=2/27; ncol2=7; w=0; offset=4; strand=D; shift=7; score= 6.2; -------GGGGACA ; cor=0.848; Ncor=0.539; logoDP=4.575; NsEucl=0.879; NSW=0.897; rcor=3; rNcor=5; rlogoDP=5; rNsEucl=12; rNSW=6; rank_mean=6.200; match_rank=2 a 0 0 0 0 0 0 0 0 136 283 118 2594 0 2574 c 0 0 0 0 0 0 0 0 0 0 0 0 2573 0 g 0 0 0 0 0 0 0 2594 2458 2311 2476 0 21 20 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TCP17_MA1290.1_JASPAR_rc_shift5 (TCP17:MA1290.1:JASPAR_rc)	0.805	0.557	3.522	0.895	0.900	17	2	11	2	5	7.400	3	; cluster_4 versus TCP17_MA1290.1_JASPAR_rc (TCP17:MA1290.1:JASPAR_rc); m=3/27; ncol2=11; w=0; offset=2; strand=R; shift=5; score= 7.4; -----GTGGGGACC ; cor=0.805; Ncor=0.557; logoDP=3.522; NsEucl=0.895; NSW=0.900; rcor=17; rNcor=2; rlogoDP=11; rNsEucl=2; rNSW=5; rank_mean=7.400; match_rank=3 a 0 0 0 0 0 13 6 6 0 0 0 85 2 1 c 0 0 0 0 0 9 6 5 1 0 0 20 106 105 g 0 0 0 0 0 77 6 80 106 108 107 0 0 2 t 0 0 0 0 0 9 90 17 1 0 1 3 0 0
StCONSTANSlike1_EEAD0013_EEADannot_shift4 (StCONSTANSlike1:EEAD0013:EEADannot)	0.810	0.515	4.364	0.882	0.903	10	7	10	9	4	8.000	4	; cluster_4 versus StCONSTANSlike1_EEAD0013_EEADannot (StCONSTANSlike1:EEAD0013:EEADannot); m=4/27; ncol2=7; w=0; offset=1; strand=D; shift=4; score= 8; ----TGTGGTG--- ; cor=0.810; Ncor=0.515; logoDP=4.364; NsEucl=0.882; NSW=0.903; rcor=10; rNcor=7; rlogoDP=10; rNsEucl=9; rNSW=4; rank_mean=8.000; match_rank=4 a 0 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 1 0 0 0 g 0 0 0 0 1 5 0 6 5 1 5 0 0 0 t 0 0 0 0 5 1 6 0 1 5 0 0 0 0
TCP13_MA1282.2_JASPAR_shift5 (TCP13:MA1282.2:JASPAR)	0.797	0.552	4.446	0.892	0.895	18	3	8	4	8	8.200	5	; cluster_4 versus TCP13_MA1282.2_JASPAR (TCP13:MA1282.2:JASPAR); m=5/27; ncol2=11; w=0; offset=2; strand=D; shift=5; score= 8.2; -----GTGGGGACC ; cor=0.797; Ncor=0.552; logoDP=4.446; NsEucl=0.892; NSW=0.895; rcor=18; rNcor=3; rlogoDP=8; rNsEucl=4; rNSW=8; rank_mean=8.200; match_rank=5 a 0 0 0 0 0 17 6 11 0 0 0 99 0 0 c 0 0 0 0 0 9 11 9 0 0 0 21 129 130 g 0 0 0 0 0 96 7 97 129 130 130 0 0 0 t 0 0 0 0 0 8 106 13 1 0 0 10 1 0
PTF1_MA1282.1_JASPAR_shift5 (PTF1:MA1282.1:JASPAR)	0.797	0.478	4.446	0.892	0.895	18	9	8	4	8	9.400	6	; cluster_4 versus PTF1_MA1282.1_JASPAR (PTF1:MA1282.1:JASPAR); m=6/27; ncol2=13; w=0; offset=2; strand=D; shift=5; score= 9.4; -----GTGGGGACC ; cor=0.797; Ncor=0.478; logoDP=4.446; NsEucl=0.892; NSW=0.895; rcor=18; rNcor=9; rlogoDP=8; rNsEucl=4; rNSW=8; rank_mean=9.400; match_rank=6 a 0 0 0 0 0 17 6 11 0 0 0 99 0 0 c 0 0 0 0 0 9 11 9 0 0 0 21 129 130 g 0 0 0 0 0 96 7 97 129 130 130 0 0 0 t 0 0 0 0 0 8 106 13 1 0 0 10 1 0
TCP17.ampDAP_M0766_AthalianaCistrome_shift5 (TCP17.ampDAP:M0766:AthalianaCistrome)	0.793	0.549	4.481	0.891	0.894	20	4	7	6	11	9.600	7	; cluster_4 versus TCP17.ampDAP_M0766_AthalianaCistrome (TCP17.ampDAP:M0766:AthalianaCistrome); m=7/27; ncol2=11; w=0; offset=2; strand=D; shift=5; score= 9.6; -----gTGGGGACC ; cor=0.793; Ncor=0.549; logoDP=4.481; NsEucl=0.891; NSW=0.894; rcor=20; rNcor=4; rlogoDP=7; rNsEucl=6; rNSW=11; rank_mean=9.600; match_rank=7 a 0 0 0 0 0 16 7 6 2 1 1 79 0 0 c 0 0 0 0 0 9 6 3 0 0 0 3 83 83 g 0 0 0 0 0 52 5 58 80 81 82 0 0 0 t 0 0 0 0 0 6 65 16 1 1 0 1 0 0
O2DREME_EEAD0018_EEADannot_rc_shift1 (O2DREME:EEAD0018:EEADannot_rc)	0.886	0.409	1.820	0.885	0.920	2	24	19	7	2	10.800	8	; cluster_4 versus O2DREME_EEAD0018_EEADannot_rc (O2DREME:EEAD0018:EEADannot_rc); m=8/27; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score= 10.8; -TGAyGTGG----- ; cor=0.886; Ncor=0.409; logoDP=1.820; NsEucl=0.885; NSW=0.920; rcor=2; rNcor=24; rlogoDP=19; rNsEucl=7; rNSW=2; rank_mean=10.800; match_rank=8 a 0 0 0 100 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 52 0 0 0 0 0 0 0 0 0 g 0 0 100 0 0 100 0 100 100 0 0 0 0 0 t 0 100 0 0 48 0 100 0 0 0 0 0 0 0
CO-NF-trimer_EEAD0156_EEADannot_rc_shift4 (CO-NF-trimer:EEAD0156:EEADannot_rc)	0.902	0.410	0.176	0.884	0.933	1	21	27	8	1	11.600	9	; cluster_4 versus CO-NF-trimer_EEAD0156_EEADannot_rc (CO-NF-trimer:EEAD0156:EEADannot_rc); m=9/27; ncol2=5; w=0; offset=1; strand=R; shift=4; score= 11.6; ----TGTGR----- ; cor=0.902; Ncor=0.410; logoDP=0.176; NsEucl=0.884; NSW=0.933; rcor=1; rNcor=21; rlogoDP=27; rNsEucl=8; rNSW=1; rank_mean=11.600; match_rank=9 a 0 0 0 0 0 0 0 0 1 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 4 0 4 3 0 0 0 0 0 t 0 0 0 0 4 0 4 0 0 0 0 0 0 0
ASHR1.DAP_M0716_AthalianaCistrome_rc_shift3 (ASHR1.DAP:M0716:AthalianaCistrome_rc)	0.726	0.533	1.475	0.902	0.895	24	6	20	1	10	12.200	10	; cluster_4 versus ASHR1.DAP_M0716_AthalianaCistrome_rc (ASHR1.DAP:M0716:AthalianaCistrome_rc); m=10/27; ncol2=15; w=0; offset=0; strand=R; shift=3; score= 12.2; ---tgaTGGTGAwg ; cor=0.726; Ncor=0.533; logoDP=1.475; NsEucl=0.902; NSW=0.895; rcor=24; rNcor=6; rlogoDP=20; rNsEucl=1; rNSW=10; rank_mean=12.200; match_rank=10 a 0 0 0 59 67 116 0 0 2 0 0 258 70 53 c 0 0 0 48 51 38 0 0 0 0 0 0 38 40 g 0 0 0 52 97 60 0 270 268 0 270 2 50 134 t 0 0 0 111 55 56 270 0 0 270 0 10 112 43
Zm00001d034298_MA1834.2_JASPAR_rc_shift2 (Zm00001d034298:MA1834.2:JASPAR_rc)	0.825	0.413	0.664	0.881	0.915	6	20	24	11	3	12.800	11	; cluster_4 versus Zm00001d034298_MA1834.2_JASPAR_rc (Zm00001d034298:MA1834.2:JASPAR_rc); m=11/27; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score= 12.8; --CGCGTGG----- ; cor=0.825; Ncor=0.413; logoDP=0.664; NsEucl=0.881; NSW=0.915; rcor=6; rNcor=20; rlogoDP=24; rNsEucl=11; rNSW=3; rank_mean=12.800; match_rank=11 a 0 0 207 744 358 72 84 262 161 0 0 0 0 0 c 0 0 5681 401 5256 252 17 487 160 0 0 0 0 0 g 0 0 522 5039 489 6223 128 5812 6091 0 0 0 0 0 t 0 0 192 418 499 55 6373 41 190 0 0 0 0 0
DEP_UN0855.1_JASPAR_shift6 (DEP:UN0855.1:JASPAR)	0.814	0.444	5.956	0.855	0.873	7	10	1	24	22	12.800	12	; cluster_4 versus DEP_UN0855.1_JASPAR (DEP:UN0855.1:JASPAR); m=12/27; ncol2=6; w=0; offset=3; strand=D; shift=6; score= 12.8; ------TGGTGA-- ; cor=0.814; Ncor=0.444; logoDP=5.956; NsEucl=0.855; NSW=0.873; rcor=7; rNcor=10; rlogoDP=1; rNsEucl=24; rNSW=22; rank_mean=12.800; match_rank=12 a 0 0 0 0 0 0 0 0 0 0 0 1000 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 1000 1000 0 1000 0 0 0 t 0 0 0 0 0 0 1000 0 0 1000 0 0 0 0
FEM111.DAP_M0491_AthalianaCistrome_shift6 (FEM111.DAP:M0491:AthalianaCistrome)	0.814	0.444	5.956	0.855	0.873	7	10	1	24	22	12.800	13	; cluster_4 versus FEM111.DAP_M0491_AthalianaCistrome (FEM111.DAP:M0491:AthalianaCistrome); m=13/27; ncol2=6; w=0; offset=3; strand=D; shift=6; score= 12.8; ------TGGTGA-- ; cor=0.814; Ncor=0.444; logoDP=5.956; NsEucl=0.855; NSW=0.873; rcor=7; rNcor=10; rlogoDP=1; rNsEucl=24; rNSW=22; rank_mean=12.800; match_rank=13 a 0 0 0 0 0 0 0 0 0 0 0 54 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 54 54 0 54 0 0 0 t 0 0 0 0 0 0 54 0 0 54 0 0 0 0
bHLH112_MA0961.2_JASPAR_rc_shift2 (bHLH112:MA0961.2:JASPAR_rc)	0.836	0.418	2.498	0.864	0.889	4	16	15	17	13	13.000	14	; cluster_4 versus bHLH112_MA0961.2_JASPAR_rc (bHLH112:MA0961.2:JASPAR_rc); m=14/27; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score= 13; --CAAGTGG----- ; cor=0.836; Ncor=0.418; logoDP=2.498; NsEucl=0.864; NSW=0.889; rcor=4; rNcor=16; rlogoDP=15; rNsEucl=17; rNSW=13; rank_mean=13.000; match_rank=14 a 0 0 0 1000 1000 0 0 0 0 0 0 0 0 0 c 0 0 1000 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 1000 0 823 1000 0 0 0 0 0 t 0 0 0 0 0 0 1000 177 0 0 0 0 0 0
OsFBH1_MA2350.1_JASPAR_rc_shift2 (OsFBH1:MA2350.1:JASPAR_rc)	0.836	0.418	2.498	0.864	0.889	5	17	16	18	14	14.000	15	; cluster_4 versus OsFBH1_MA2350.1_JASPAR_rc (OsFBH1:MA2350.1:JASPAR_rc); m=15/27; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score= 14; --CAAGTGG----- ; cor=0.836; Ncor=0.418; logoDP=2.498; NsEucl=0.864; NSW=0.889; rcor=5; rNcor=17; rlogoDP=16; rNsEucl=18; rNSW=14; rank_mean=14.000; match_rank=15 a 0 0 0 999 999 0 0 0 0 0 0 0 0 0 c 0 0 999 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 999 0 822 999 0 0 0 0 0 t 0 0 0 0 0 0 999 177 0 0 0 0 0 0
At1g70910.DAP_M0349_AthalianaCistrome_rc_shift6 (At1g70910.DAP:M0349:AthalianaCistrome_rc)	0.809	0.515	0.288	0.873	0.887	11	8	25	13	16	14.600	16	; cluster_4 versus At1g70910.DAP_M0349_AthalianaCistrome_rc (At1g70910.DAP:M0349:AthalianaCistrome_rc); m=16/27; ncol2=7; w=0; offset=3; strand=R; shift=6; score= 14.6; ------TGGTGAk- ; cor=0.809; Ncor=0.515; logoDP=0.288; NsEucl=0.873; NSW=0.887; rcor=11; rNcor=8; rlogoDP=25; rNsEucl=13; rNSW=16; rank_mean=14.600; match_rank=16 a 0 0 0 0 0 0 0 0 0 0 0 50 12 0 c 0 0 0 0 0 0 0 0 0 0 0 0 3 0 g 0 0 0 0 0 0 0 50 50 0 50 0 16 0 t 0 0 0 0 0 0 50 0 0 50 0 0 19 0
AT2G48100_UN0843.1_JASPAR_shift6 (AT2G48100:UN0843.1:JASPAR)	0.807	0.440	5.546	0.855	0.874	15	14	3	22	20	14.800	17	; cluster_4 versus AT2G48100_UN0843.1_JASPAR (AT2G48100:UN0843.1:JASPAR); m=17/27; ncol2=6; w=0; offset=3; strand=D; shift=6; score= 14.8; ------TGGTGA-- ; cor=0.807; Ncor=0.440; logoDP=5.546; NsEucl=0.855; NSW=0.874; rcor=15; rNcor=14; rlogoDP=3; rNsEucl=22; rNSW=20; rank_mean=14.800; match_rank=17 a 0 0 0 0 0 0 0 0 0 0 0 895 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 1000 1000 0 1000 0 0 0 t 0 0 0 0 0 0 1000 0 0 1000 0 105 0 0
AGL80_UN0852.1_JASPAR_rc_shift6 (AGL80:UN0852.1:JASPAR_rc)	0.814	0.444	2.866	0.855	0.873	7	10	12	24	22	15.000	18	; cluster_4 versus AGL80_UN0852.1_JASPAR_rc (AGL80:UN0852.1:JASPAR_rc); m=18/27; ncol2=6; w=0; offset=3; strand=R; shift=6; score= 15; ------TGGTGA-- ; cor=0.814; Ncor=0.444; logoDP=2.866; NsEucl=0.855; NSW=0.873; rcor=7; rNcor=10; rlogoDP=12; rNsEucl=24; rNSW=22; rank_mean=15.000; match_rank=18 a 0 0 0 0 0 0 0 0 0 0 0 1000 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 1000 1000 0 1000 0 0 0 t 0 0 0 0 0 0 1000 0 0 1000 0 0 0 0
BHLH112_MA0961.1_JASPAR_rc_shift1 (BHLH112:MA0961.1:JASPAR_rc)	0.770	0.414	2.501	0.868	0.877	21	18	13	14	17	16.600	19	; cluster_4 versus BHLH112_MA0961.1_JASPAR_rc (BHLH112:MA0961.1:JASPAR_rc); m=19/27; ncol2=9; w=-2; offset=-2; strand=R; shift=1; score= 16.6; -gCAAGTGGs---- ; cor=0.770; Ncor=0.414; logoDP=2.501; NsEucl=0.868; NSW=0.877; rcor=21; rNcor=18; rlogoDP=13; rNsEucl=14; rNSW=17; rank_mean=16.600; match_rank=19 a 0 223 0 1000 1000 0 0 0 0 222 0 0 0 0 c 0 217 1000 0 0 0 0 0 0 306 0 0 0 0 g 0 343 0 0 0 1000 0 823 1000 250 0 0 0 0 t 0 218 0 0 0 0 1000 177 0 221 0 0 0 0
AGL55_MA1202.1_JASPAR_rc_shift6 (AGL55:MA1202.1:JASPAR_rc)	0.807	0.440	2.368	0.855	0.874	14	13	18	21	19	17.000	20	; cluster_4 versus AGL55_MA1202.1_JASPAR_rc (AGL55:MA1202.1:JASPAR_rc); m=20/27; ncol2=6; w=0; offset=3; strand=R; shift=6; score= 17; ------TGGTGA-- ; cor=0.807; Ncor=0.440; logoDP=2.368; NsEucl=0.855; NSW=0.874; rcor=14; rNcor=13; rlogoDP=18; rNsEucl=21; rNSW=19; rank_mean=17.000; match_rank=20 a 0 0 0 0 0 0 0 0 0 0 0 81 0 0 c 0 0 0 0 0 0 0 0 0 0 0 4 0 0 g 0 0 0 0 0 0 0 90 90 0 90 5 0 0 t 0 0 0 0 0 0 90 0 0 90 0 0 0 0
bhlh112_M0229_1.02_CISBP_rc_shift1 (bhlh112:M0229_1.02:CISBP_rc)	0.769	0.414	2.501	0.868	0.877	22	19	14	15	18	17.600	21	; cluster_4 versus bhlh112_M0229_1.02_CISBP_rc (bhlh112:M0229_1.02:CISBP_rc); m=21/27; ncol2=9; w=-2; offset=-2; strand=R; shift=1; score= 17.6; -gCAAGTGGs---- ; cor=0.769; Ncor=0.414; logoDP=2.501; NsEucl=0.868; NSW=0.877; rcor=22; rNcor=19; rlogoDP=14; rNsEucl=15; rNSW=18; rank_mean=17.600; match_rank=21 a 0 22 0 100 100 0 0 0 0 22 0 0 0 0 c 0 22 100 0 0 0 0 0 0 31 0 0 0 0 g 0 34 0 0 0 100 0 82 100 25 0 0 0 0 t 0 22 0 0 0 0 100 18 0 22 0 0 0 0
At2g48100.DAP_M0339_AthalianaCistrome_rc_shift6 (At2g48100.DAP:M0339:AthalianaCistrome_rc)	0.807	0.440	2.417	0.855	0.874	16	15	17	23	21	18.400	22	; cluster_4 versus At2g48100.DAP_M0339_AthalianaCistrome_rc (At2g48100.DAP:M0339:AthalianaCistrome_rc); m=22/27; ncol2=6; w=0; offset=3; strand=R; shift=6; score= 18.4; ------TGGTGA-- ; cor=0.807; Ncor=0.440; logoDP=2.417; NsEucl=0.855; NSW=0.874; rcor=16; rNcor=15; rlogoDP=17; rNsEucl=23; rNSW=21; rank_mean=18.400; match_rank=22 a 0 0 0 0 0 0 0 0 0 0 0 34 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 38 38 0 38 0 0 0 t 0 0 0 0 0 0 38 0 0 38 0 4 0 0
ABF4_MA1659.2_JASPAR_rc_shift2 (ABF4:MA1659.2:JASPAR_rc)	0.808	0.404	0.268	0.865	0.891	13	26	26	16	12	18.600	23	; cluster_4 versus ABF4_MA1659.2_JASPAR_rc (ABF4:MA1659.2:JASPAR_rc); m=23/27; ncol2=7; w=-1; offset=-1; strand=R; shift=2; score= 18.6; --sACGTGG----- ; cor=0.808; Ncor=0.404; logoDP=0.268; NsEucl=0.865; NSW=0.891; rcor=13; rNcor=26; rlogoDP=26; rNsEucl=16; rNSW=12; rank_mean=18.600; match_rank=23 a 0 0 253 5815 200 161 73 62 155 0 0 0 0 0 c 0 0 1825 52 5470 44 47 86 62 0 0 0 0 0 g 0 0 3358 58 166 5666 20 5763 5169 0 0 0 0 0 t 0 0 610 121 210 175 5906 135 660 0 0 0 0 0
Zm00001d034298_MA1834.1_JASPAR_rc_shift0 (Zm00001d034298:MA1834.1:JASPAR_rc)	0.716	0.409	0.675	0.882	0.888	25	22	23	10	15	19.000	24	; cluster_4 versus Zm00001d034298_MA1834.1_JASPAR_rc (Zm00001d034298:MA1834.1:JASPAR_rc); m=24/27; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score= 19; ssCGCGTGGgs--- ; cor=0.716; Ncor=0.409; logoDP=0.675; NsEucl=0.882; NSW=0.888; rcor=25; rNcor=22; rlogoDP=23; rNsEucl=10; rNSW=15; rank_mean=19.000; match_rank=24 a 1276 1462 207 744 358 72 84 262 161 1494 1075 0 0 0 c 1777 1893 5681 401 5256 252 17 487 160 1597 2146 0 0 0 g 2323 1886 522 5039 489 6223 128 5812 6091 2040 2050 0 0 0 t 1226 1361 192 418 499 55 6373 41 190 1471 1331 0 0 0
BHLH168_ZmSPT2_Mo17_1_EEAD0221_EEADannot_shift0 (BHLH168_ZmSPT2_Mo17_1:EEAD0221:EEADannot)	0.715	0.409	4.510	0.863	0.850	27	25	6	19	25	20.400	25	; cluster_4 versus BHLH168_ZmSPT2_Mo17_1_EEAD0221_EEADannot (BHLH168_ZmSPT2_Mo17_1:EEAD0221:EEADannot); m=25/27; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score= 20.4; gcCACGTGGGc--- ; cor=0.715; Ncor=0.409; logoDP=4.510; NsEucl=0.863; NSW=0.850; rcor=27; rNcor=25; rlogoDP=6; rNsEucl=19; rNSW=25; rank_mean=20.400; match_rank=25 a 13 14 0 99 0 1 0 0 0 7 8 0 0 0 c 14 55 100 0 95 0 0 0 3 9 57 0 0 0 g 60 20 0 1 0 99 0 100 96 79 14 0 0 0 t 13 11 0 0 5 0 100 0 1 5 21 0 0 0
BHLH168_ZmSPT2_B73_3_m1_EEAD0220_EEADannot_rc_shift0 (BHLH168_ZmSPT2_B73_3_m1:EEAD0220:EEADannot_rc)	0.716	0.409	1.237	0.862	0.848	26	23	22	20	26	23.400	26	; cluster_4 versus BHLH168_ZmSPT2_B73_3_m1_EEAD0220_EEADannot_rc (BHLH168_ZmSPT2_B73_3_m1:EEAD0220:EEADannot_rc); m=26/27; ncol2=11; w=-3; offset=-3; strand=R; shift=0; score= 23.4; gcCACGTGGGc--- ; cor=0.716; Ncor=0.409; logoDP=1.237; NsEucl=0.862; NSW=0.848; rcor=26; rNcor=23; rlogoDP=22; rNsEucl=20; rNSW=26; rank_mean=23.400; match_rank=26 a 11 14 0 100 0 2 0 0 0 6 10 0 0 0 c 16 55 100 0 97 0 0 0 3 7 56 0 0 0 g 60 22 0 0 0 98 0 100 97 82 15 0 0 0 t 13 9 0 0 3 0 100 0 0 5 19 0 0 0