position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.135019_2026-01-10.135019_8fKo4y/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title ZBTB24_PROM -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.135019_2026-01-10.135019_8fKo4y/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.135019_2026-01-10.135019_8fKo4y/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.135019_2026-01-10.135019_8fKo4y/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 69 Sum of sequence lengths 22267 Min sequence length 0 Max sequence length 1000 Average sequence length 322 Possible positions 22267 Sequences: # length ID 1 1000 chr1:11868-14412 2 1000 chr1:11868-14409 3 359 chr1:11868-12227 4 109 chr1:12612-12721 5 1000 chr1:13220-14409 6 1000 chr1:11871-14412 7 356 chr1:11871-12227 8 109 chr1:12612-12721 9 1000 chr1:13224-14412 10 1000 chr1:11873-14409 11 354 chr1:11873-12227 12 127 chr1:12594-12721 13 253 chr1:13402-13655 14 749 chr1:13660-14409 15 1000 chr1:12009-13670 16 48 chr1:12009-12057 17 49 chr1:12178-12227 18 85 chr1:12612-12697 19 78 chr1:12974-13052 20 154 chr1:13220-13374 21 218 chr1:13452-13670 22 1000 chr1:14362-29806 23 1000 chr1:14362-29370 24 50 chr1:29320-29370 25 154 chr1:24737-24891 26 112 chr1:18267-18379 27 147 chr1:17914-18061 28 141 chr1:17601-17742 29 132 chr1:17232-17364 30 202 chr1:16853-17055 31 159 chr1:16606-16765 32 44 chr1:15903-15947 33 106 chr1:15795-15901 34 69 chr1:14969-15038 35 467 chr1:14362-14829 36 1000 chr1:14362-24886 37 153 chr1:24733-24886 38 102 chr1:18267-18369 39 147 chr1:17914-18061 40 137 chr1:17605-17742 41 7 chr1:17497-17504 42 132 chr1:17232-17364 43 202 chr1:16853-17055 44 69 chr1:14969-15038 45 467 chr1:14362-14829 46 1000 chr1:14362-29370 47 50 chr1:29320-29370 48 154 chr1:24737-24891 49 147 chr1:17914-18061 50 137 chr1:17605-17742 51 136 chr1:17232-17368 52 198 chr1:16857-17055 53 159 chr1:16606-16765 54 152 chr1:15795-15947 55 69 chr1:14969-15038 56 467 chr1:14362-14829 57 1000 chr1:14403-29570 58 37 chr1:29533-29570 59 154 chr1:24737-24891 60 99 chr1:18267-18366 61 147 chr1:17914-18061 62 137 chr1:17605-17742 63 136 chr1:17232-17368 64 198 chr1:16857-17055 65 159 chr1:16606-16765 66 152 chr1:15795-15947 67 34 chr1:15004-15038 68 98 chr1:14403-14501 69 1000 chr1:14410-29806 Oligonucleotide statistics: Total occurrences 7171 Position interval parameters: Position interval 20 Number of windows 50 Total positions 22267 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 13 260 2 -24 [-479,-460] -469.5 13 260 3 -23 [-459,-440] -449.5 13 260 4 -22 [-439,-420] -429.5 13 260 5 -21 [-419,-400] -409.5 13 260 6 -20 [-399,-380] -389.5 13 260 7 -19 [-379,-360] -369.5 14 275 8 -18 [-359,-340] -349.5 14 280 9 -17 [-339,-320] -329.5 14 280 10 -16 [-319,-300] -309.5 14 280 11 -15 [-299,-280] -289.5 14 280 12 -14 [-279,-260] -269.5 14 280 13 -13 [-259,-240] -249.5 14 280 14 -12 [-239,-220] -229.5 17 322 15 -11 [-219,-200] -209.5 17 340 16 -10 [-199,-180] -189.5 17 340 17 -9 [-179,-160] -169.5 20 396 18 -8 [-159,-140] -149.5 20 400 19 -7 [-139,-120] -129.5 21 407 20 -6 [-119,-100] -109.5 24 434 21 -5 [-99,-80] -89.5 26 520 22 -4 [-79,-60] -69.5 49 827 23 -3 [-59,-40] -49.5 57 1075 24 -2 [-39,-20] -29.5 66 1228 25 -1 [-19,0] -9.5 69 1361 26 0 [1,20] 10.5 69 1357 27 1 [21,40] 30.5 66 1218 28 2 [41,60] 50.5 57 1065 29 3 [61,80] 70.5 49 806 30 4 [81,100] 90.5 26 516 31 5 [101,120] 110.5 22 428 32 6 [121,140] 130.5 21 406 33 7 [141,160] 150.5 20 400 34 8 [161,180] 170.5 20 393 35 9 [181,200] 190.5 17 340 36 10 [201,220] 210.5 17 340 37 11 [221,240] 230.5 17 319 38 12 [241,260] 250.5 14 280 39 13 [261,280] 270.5 14 280 40 14 [281,300] 290.5 14 280 41 15 [301,320] 310.5 14 280 42 16 [321,340] 330.5 14 280 43 17 [341,360] 350.5 14 280 44 18 [361,380] 370.5 14 274 45 19 [381,400] 390.5 13 260 46 20 [401,420] 410.5 13 260 47 21 [421,440] 430.5 13 260 48 22 [441,460] 450.5 13 260 49 23 [461,480] 470.5 13 260 50 24 [481,500] 490.5 13 260 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 2135 | 157.4 | 49 | 2.7e-13 | 1.1e-12 | 11.97 | 1 | 44 | 31 | 35 | 39 | 39 | 41 | 43 | 31 | 32 | 50 | 31 | 29 | 35 | 22 | 19 | 19 | 45 | 37 | 25 | 41 | 54 | 69 | 98 | 98 | 142 | 120 | 82 | 65 | 60 | 40 | 40 | 42 | 48 | 39 | 33 | 32 | 26 | 30 | 32 | 25 | 31 | 31 | 27 | 36 | 30 | 28 | 29 | 25 | 12 | 23 |
| g | g | 2001 | 134.2 | 49 | 7.4e-10 | 2.9e-09 | 8.53 | 2 | 36 | 43 | 32 | 31 | 34 | 33 | 36 | 41 | 44 | 28 | 36 | 31 | 25 | 14 | 15 | 28 | 34 | 34 | 45 | 30 | 33 | 74 | 93 | 108 | 109 | 120 | 113 | 87 | 59 | 44 | 30 | 39 | 38 | 31 | 32 | 20 | 24 | 14 | 16 | 21 | 22 | 37 | 32 | 31 | 25 | 18 | 14 | 19 | 24 | 24 |
| a | a | 1463 | 133.8 | 49 | 8.5e-10 | 3.4e-09 | 8.47 | 3 | 22 | 29 | 24 | 26 | 30 | 26 | 23 | 19 | 21 | 25 | 25 | 17 | 14 | 11 | 19 | 17 | 19 | 34 | 33 | 29 | 38 | 39 | 47 | 59 | 63 | 68 | 57 | 78 | 49 | 41 | 46 | 28 | 28 | 20 | 21 | 21 | 21 | 13 | 13 | 24 | 21 | 29 | 31 | 18 | 24 | 17 | 19 | 20 | 25 | 22 |
| t | t | 1572 | 85.8 | 49 | 9.1e-04 | 0.0036 | 2.44 | 4 | 19 | 17 | 29 | 24 | 17 | 20 | 18 | 29 | 23 | 17 | 26 | 23 | 13 | 13 | 7 | 22 | 37 | 35 | 37 | 42 | 35 | 55 | 81 | 69 | 87 | 89 | 70 | 58 | 60 | 35 | 24 | 31 | 26 | 30 | 14 | 27 | 22 | 23 | 19 | 28 | 26 | 23 | 30 | 29 | 21 | 25 | 18 | 16 | 19 | 14 |
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