position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title promotor -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 500 Sum of sequence lengths 149801 Min sequence length 0 Max sequence length 1000 Average sequence length 299 Possible positions 149801 Oligonucleotide statistics: Total occurrences 148142 Position interval parameters: Position interval 20 Number of windows 50 Total positions 149801 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 7 110 2 -24 [-479,-460] -469.5 7 140 3 -23 [-459,-440] -449.5 8 150 4 -22 [-439,-420] -429.5 10 175 5 -21 [-419,-400] -409.5 11 220 6 -20 [-399,-380] -389.5 12 231 7 -19 [-379,-360] -369.5 17 307 8 -18 [-359,-340] -349.5 21 379 9 -17 [-339,-320] -329.5 28 478 10 -16 [-319,-300] -309.5 38 680 11 -15 [-299,-280] -289.5 46 813 12 -14 [-279,-260] -269.5 60 1103 13 -13 [-259,-240] -249.5 73 1335 14 -12 [-239,-220] -229.5 89 1632 15 -11 [-219,-200] -209.5 110 2045 16 -10 [-199,-180] -189.5 139 2475 17 -9 [-179,-160] -169.5 161 2994 18 -8 [-159,-140] -149.5 200 3639 19 -7 [-139,-120] -129.5 239 4329 20 -6 [-119,-100] -109.5 294 5276 21 -5 [-99,-80] -89.5 411 6938 22 -4 [-79,-60] -69.5 500 9699 23 -3 [-59,-40] -49.5 500 10000 24 -2 [-39,-20] -29.5 500 10000 25 -1 [-19,0] -9.5 500 10000 26 0 [1,20] 10.5 500 10000 27 1 [21,40] 30.5 500 10000 28 2 [41,60] 50.5 500 10000 29 3 [61,80] 70.5 500 9600 30 4 [81,100] 90.5 398 6818 31 5 [101,120] 110.5 290 5227 32 6 [121,140] 130.5 236 4288 33 7 [141,160] 150.5 199 3600 34 8 [161,180] 170.5 161 2973 35 9 [181,200] 190.5 136 2450 36 10 [201,220] 210.5 109 2030 37 11 [221,240] 230.5 89 1616 38 12 [241,260] 250.5 72 1322 39 13 [261,280] 270.5 60 1092 40 14 [281,300] 290.5 45 806 41 15 [301,320] 310.5 37 670 42 16 [321,340] 330.5 27 468 43 17 [341,360] 350.5 21 378 44 18 [361,380] 370.5 17 301 45 19 [381,400] 390.5 12 230 46 20 [401,420] 410.5 11 220 47 21 [421,440] 430.5 10 172 48 22 [441,460] 450.5 8 148 49 23 [461,480] 470.5 7 140 50 24 [481,500] 490.5 7 104 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 30366 | 121.7 | 49 | 4.1e-08 | 1.6e-07 | 6.79 | 1 | 17 | 33 | 43 | 46 | 52 | 52 | 65 | 104 | 99 | 163 | 170 | 244 | 275 | 346 | 485 | 559 | 669 | 773 | 903 | 1028 | 1378 | 1863 | 2011 | 1950 | 1974 | 2002 | 2048 | 1991 | 1843 | 1366 | 1006 | 845 | 711 | 570 | 506 | 442 | 326 | 306 | 243 | 168 | 160 | 107 | 84 | 81 | 50 | 57 | 50 | 36 | 40 | 26 |
| g | g | 43731 | 114.4 | 49 | 3.8e-07 | 1.5e-06 | 5.82 | 2 | 37 | 54 | 45 | 66 | 59 | 75 | 104 | 113 | 129 | 190 | 252 | 344 | 407 | 458 | 563 | 749 | 857 | 1001 | 1266 | 1622 | 2170 | 3011 | 2993 | 3017 | 2825 | 2947 | 2774 | 2918 | 2740 | 2091 | 1487 | 1244 | 1023 | 797 | 723 | 561 | 467 | 370 | 277 | 196 | 160 | 122 | 92 | 76 | 54 | 63 | 41 | 42 | 32 | 27 |
| c | c | 43598 | 98.3 | 49 | 3.8e-05 | 0.00015 | 3.82 | 3 | 29 | 31 | 34 | 39 | 60 | 57 | 84 | 100 | 157 | 197 | 232 | 295 | 340 | 445 | 532 | 632 | 852 | 1057 | 1186 | 1502 | 1999 | 2809 | 2950 | 2861 | 3043 | 2977 | 2925 | 2966 | 2960 | 2027 | 1614 | 1246 | 1077 | 930 | 672 | 554 | 436 | 360 | 298 | 248 | 198 | 119 | 104 | 70 | 73 | 56 | 54 | 41 | 44 | 26 |
| t | t | 30447 | 93.0 | 49 | 1.5e-04 | 0.0006 | 3.22 | 4 | 27 | 22 | 28 | 24 | 49 | 47 | 54 | 62 | 93 | 130 | 159 | 220 | 313 | 383 | 459 | 511 | 579 | 768 | 934 | 1084 | 1360 | 1976 | 1968 | 2060 | 2039 | 1947 | 2084 | 1959 | 1913 | 1256 | 1065 | 913 | 751 | 620 | 493 | 421 | 349 | 252 | 252 | 177 | 152 | 120 | 98 | 74 | 53 | 44 | 27 | 29 | 24 | 25 |
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