/var/www/html/rsat/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title promotor -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	500
	Sum of sequence lengths      	149801
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	299
	Possible positions           	149301
 Oligonucleotide statistics:
	Total occurrences    	147627
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	149301
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	7	110
	2	-24	[-479,-460]	-469.5	7	140
	3	-23	[-459,-440]	-449.5	8	150
	4	-22	[-439,-420]	-429.5	10	175
	5	-21	[-419,-400]	-409.5	11	220
	6	-20	[-399,-380]	-389.5	12	231
	7	-19	[-379,-360]	-369.5	17	307
	8	-18	[-359,-340]	-349.5	21	379
	9	-17	[-339,-320]	-329.5	28	478
	10	-16	[-319,-300]	-309.5	38	680
	11	-15	[-299,-280]	-289.5	46	813
	12	-14	[-279,-260]	-269.5	60	1103
	13	-13	[-259,-240]	-249.5	73	1335
	14	-12	[-239,-220]	-229.5	89	1632
	15	-11	[-219,-200]	-209.5	110	2045
	16	-10	[-199,-180]	-189.5	139	2475
	17	-9	[-179,-160]	-169.5	161	2994
	18	-8	[-159,-140]	-149.5	200	3639
	19	-7	[-139,-120]	-129.5	239	4329
	20	-6	[-119,-100]	-109.5	294	5276
	21	-5	[-99,-80]	-89.5	411	6938
	22	-4	[-79,-60]	-69.5	500	9699
	23	-3	[-59,-40]	-49.5	500	10000
	24	-2	[-39,-20]	-29.5	500	10000
	25	-1	[-19,0]	-9.5	500	10000
	26	0	[1,20]	10.5	500	10000
	27	1	[21,40]	30.5	500	10000
	28	2	[41,60]	50.5	500	10000
	29	3	[61,80]	70.5	500	9498
	30	4	[81,100]	90.5	397	6710
	31	5	[101,120]	110.5	288	5173
	32	6	[121,140]	130.5	234	4251
	33	7	[141,160]	150.5	199	3562
	34	8	[161,180]	170.5	161	2948
	35	9	[181,200]	190.5	135	2423
	36	10	[201,220]	210.5	108	2010
	37	11	[221,240]	230.5	89	1599
	38	12	[241,260]	250.5	71	1310
	39	13	[261,280]	270.5	59	1077
	40	14	[281,300]	290.5	45	798
	41	15	[301,320]	310.5	37	660
	42	16	[321,340]	330.5	27	462
	43	17	[341,360]	350.5	21	374
	44	18	[361,380]	370.5	17	296
	45	19	[381,400]	390.5	12	229
	46	20	[401,420]	410.5	11	219
	47	21	[421,440]	430.5	10	170
	48	22	[441,460]	450.5	8	147
	49	23	[461,480]	470.5	7	140
	50	24	[481,500]	490.5	7	97

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 8030 137.3 49 2.7e-10 4.2e-09 8.37 1 8 5 8 3 13 13 9 13 21 32 34 66 84 115 133 154 140 225 276 286 340 498 533 576 548 464 615 493 445 286 289 238 182 169 128 130 90 62 74 59 41 34 29 21 15 11 8 6 4 4
gg gg 15031 136.2 49 3.9e-10 6.2e-09 8.21 2 15 21 7 25 18 27 37 39 43 61 85 125 153 165 191 276 301 332 425 569 773 1066 1048 1094 996 983 922 965 930 745 497 436 356 255 272 166 158 115 88 50 48 41 26 20 14 15 12 11 4 10
aa aa 7947 133.2 49 1.0e-09 1.6e-08 7.79 3 1 5 12 16 22 17 20 29 24 49 50 64 78 105 132 152 199 238 247 264 334 483 523 529 540 522 558 524 440 316 251 186 165 150 130 110 83 86 71 46 34 29 16 19 14 14 18 7 14 11
cc cc 14869 118.5 49 1.1e-07 1.7e-06 5.76 4 10 6 11 11 18 9 23 32 63 70 81 102 118 134 174 198 292 371 396 498 688 952 1026 942 1089 1004 1025 1017 1018 710 578 424 371 317 226 194 130 114 91 90 71 25 28 19 27 16 25 15 12 8
ag ag 10738 94.9 49 9.2e-05 0.0015 2.83 5 7 18 20 19 10 12 31 37 39 55 63 92 91 107 147 205 241 254 335 396 527 707 729 670 649 725 692 722 624 514 360 308 243 189 179 175 104 95 71 49 49 28 29 26 16 26 18 18 13 4
ta ta 4146 94.8 49 9.6e-05 0.0015 2.81 6 1 3 5 5 7 11 8 15 15 22 23 41 49 70 77 78 93 114 142 145 187 226 283 267 273 272 268 260 219 154 129 123 102 76 70 67 45 37 32 20 26 20 23 11 9 8 6 5 2 2
at at 4615 85.8 49 8.9e-04 0.014 1.84 7 6 4 5 4 7 13 7 14 16 25 29 35 61 59 81 94 86 113 131 149 209 270 308 305 332 303 307 277 269 183 149 128 117 77 81 54 60 55 46 28 25 28 16 18 5 7 4 4 5 6
cg cg 8846 84.2 49 1.3e-03 0.021 1.68 8 5 7 6 11 12 24 19 19 28 40 51 64 75 91 85 140 148 198 247 341 464 608 644 615 612 642 587 620 578 386 294 222 206 168 124 99 85 73 53 39 29 24 13 11 9 9 7 5 7 2
gc gc 12863 71.1 49 2.1e-02 0.34 0.47 9 11 9 16 19 18 27 33 34 39 58 76 86 106 132 143 184 246 305 362 489 624 899 878 877 857 900 804 882 838 611 468 343 278 282 188 157 135 110 85 69 35 31 30 15 14 20 11 10 14 5
ga ga 8974 65.5 49 5.7e-02 0.91 0.04 10 6 18 14 16 8 13 18 27 24 41 51 81 86 87 131 181 180 205 263 290 417 589 598 604 551 605 618 615 537 453 280 253 216 153 146 131 102 88 58 45 41 25 19 23 13 14 12 14 10 4
ca ca 9073 62.6 49 9.2e-02 1.5 -0.17 11 8 10 9 9 16 11 20 24 38 50 44 55 56 87 134 154 185 209 244 314 396 535 609 561 615 604 584 609 608 430 341 270 222 193 159 120 99 95 73 56 51 32 31 21 20 19 11 12 14 6
ct ct 10776 61.0 49 1.2e-01 1.9 -0.27 12 6 8 8 8 14 13 22 25 28 37 56 74 91 133 139 140 226 279 299 349 451 714 670 743 727 726 729 719 751 490 398 328 277 252 162 139 122 78 80 62 47 37 32 19 17 12 11 9 11 8
ac ac 6846 57.3 49 1.9e-01 3.1 -0.49 13 3 6 6 7 13 10 7 24 20 34 28 53 45 75 125 108 143 168 190 219 308 403 451 445 452 451 491 468 459 306 225 211 166 139 106 94 74 64 49 42 49 19 21 18 14 9 10 6 8 4
tg tg 9075 47.3 49 5.4e-01 8.7 -0.94 14 11 7 12 13 17 11 17 20 27 32 56 61 96 96 143 139 167 224 265 348 429 650 581 599 578 600 567 611 614 390 305 269 213 182 140 119 112 76 73 46 35 29 21 20 12 13 4 9 7 9
tc tc 8981 45.8 49 6.0e-01 9.7 -0.98 15 7 7 3 3 12 12 20 14 30 44 46 52 84 102 105 140 179 205 251 305 403 602 571 617 640 611 633 595 596 382 319 264 238 185 141 99 92 72 67 49 45 35 23 18 17 12 7 9 11 7
gt gt 6817 44.2 49 6.7e-01 11 -1.03 16 5 6 8 6 15 8 16 13 23 30 40 52 62 74 98 107 130 159 216 274 356 457 468 441 421 458 429 456 430 277 235 208 171 104 114 105 71 55 44 31 34 25 17 17 13 14 6 7 4 7 
 Host name	rsat
 Job started	2026-01-10.155304
 Job done	2026-01-10.155305
 Seconds	0.91
	user	0.91
	system	0.02
	cuser	0
;	csystem	0