RSAT - peak-motifs result

Analysis: promotor (10/01/2026 15:53)

peak-motifs  -v 1 -title promotor -i $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: gcggggcg (sig=9.56; e-value=2.8e-10) RC: cgccccgc oligos_6nt_mkv3_m2 assembly: cggagcg (sig=7.93; e-value=1.2e-08) RC: cgctccg oligos_6nt_mkv3_m3 assembly: caggacc (sig=7.48; e-value=3.3e-08) RC: ggtcctg oligos_6nt_mkv3_m4 assembly: gccaggc (sig=2.84; e-value=0.0014) RC: gcctggc oligos_6nt_mkv3_m5 assembly: aagaaa (sig=2.75; e-value=0.0018) RC: tttctt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: caggacct (sig=5.20; e-value=6.3e-06) RC: aggtcctg oligos_7nt_mkv4_m2 assembly: ccgggcc (sig=2.03; e-value=0.0093) RC: ggcccgg oligos_7nt_mkv4_m3 assembly: ccctccc (sig=1.97; e-value=0.011) RC: gggaggg oligos_7nt_mkv4_m4 assembly: gccccgcc (sig=1.50; e-value=0.032) RC: ggcggggc oligos_7nt_mkv4_m5 assembly: ccggagc (sig=0.55; e-value=0.28) RC: gctccgg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=9.56; evalue=2.8e-10 gsGCGGGGCggg CCCGCCCCGCSC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 79 (15.80%) Max nb of predicted sites per peak: 5  (chr3:126194146-126194747) Mean nb of predicted sites per peak: 1.57	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=7.93; evalue=1.2e-08 ssCGGAGCbgs SCVGCTCCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 97 (19.40%) Max nb of predicted sites per peak: 5  (chr1:29563033-29563197) Mean nb of predicted sites per peak: 1.32	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=7.48; evalue=3.3e-08 tccAGGACCtk MAGGTCCTGGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 100 (20.00%) Max nb of predicted sites per peak: 4  (chr2:242295151-242295343) Mean nb of predicted sites per peak: 1.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=2.84; evalue=0.0014 rysCCAGGChs SDGCCTGGSRY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 33 (6.60%) Max nb of predicted sites per peak: 2  (chr9:99329283-99329715) Mean nb of predicted sites per peak: 1.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=2.75; evalue=0.0018 dwAAGAAAww WWTTTCTTWH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 107 (21.40%) Max nb of predicted sites per peak: 7  (chr2:188418821-188419367) Mean nb of predicted sites per peak: 1.61	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=5.20; evalue=6.3e-06 kcCAGGACCTss SSAGGTCCTGGM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 69 (13.80%) Max nb of predicted sites per peak: 4  (chr2:242295151-242295343) Mean nb of predicted sites per peak: 1.43	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=2.03; evalue=0.0093 ssCCGgGCCss SSGGCCCGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 88 (17.60%) Max nb of predicted sites per peak: 5  (chr5:175970084-175970520) Mean nb of predicted sites per peak: 1.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=1.97; evalue=0.011 yyCCCTCCCsc GSGGGAGGGRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 97 (19.40%) Max nb of predicted sites per peak: 7  (chr13:100632984-100633559) Mean nb of predicted sites per peak: 1.30	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=1.50; evalue=0.032 csGCCCCGCCcs SGGGCGGGGCSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 91 (18.20%) Max nb of predicted sites per peak: 5  (chr2:242295151-242295343) Mean nb of predicted sites per peak: 1.57	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=0.55; evalue=0.28 csCCGGAGCss SSGCTCCGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 54 (10.80%) Max nb of predicted sites per peak: 3  (chr5:66299673-66300366) Mean nb of predicted sites per peak: 1.31	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title promotor -i $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF

Warning: Not a single pattern was found in file tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/01/10/peak-motifs.2026-01-10.155300_2026-01-10.155300_GuwVfF/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab