position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Promotor -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 5379 Sum of sequence lengths 1634236 Min sequence length 0 Max sequence length 1000 Average sequence length 303 Possible positions 1634236 Oligonucleotide statistics: Total occurrences 1571741 Position interval parameters: Position interval 20 Number of windows 50 Total positions 1634236 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 109 2057 2 -24 [-479,-460] -469.5 128 2301 3 -23 [-459,-440] -449.5 146 2731 4 -22 [-439,-420] -429.5 167 3151 5 -21 [-419,-400] -409.5 185 3580 6 -20 [-399,-380] -389.5 215 4020 7 -19 [-379,-360] -369.5 256 4638 8 -18 [-359,-340] -349.5 297 5510 9 -17 [-339,-320] -329.5 355 6568 10 -16 [-319,-300] -309.5 422 7830 11 -15 [-299,-280] -289.5 512 9328 12 -14 [-279,-260] -269.5 611 11353 13 -13 [-259,-240] -249.5 757 13743 14 -12 [-239,-220] -229.5 919 16884 15 -11 [-219,-200] -209.5 1112 20439 16 -10 [-199,-180] -189.5 1369 24862 17 -9 [-179,-160] -169.5 1698 30605 18 -8 [-159,-140] -149.5 2112 38048 19 -7 [-139,-120] -129.5 2580 47038 20 -6 [-119,-100] -109.5 3301 58522 21 -5 [-99,-80] -89.5 4623 78863 22 -4 [-79,-60] -69.5 5379 104960 23 -3 [-59,-40] -49.5 5379 107580 24 -2 [-39,-20] -29.5 5379 107580 25 -1 [-19,0] -9.5 5379 107580 26 0 [1,20] 10.5 5379 107580 27 1 [21,40] 30.5 5379 107580 28 2 [41,60] 50.5 5379 107580 29 3 [61,80] 70.5 5379 104203 30 4 [81,100] 90.5 4541 77513 31 5 [101,120] 110.5 3245 57793 32 6 [121,140] 130.5 2547 46584 33 7 [141,160] 150.5 2087 37644 34 8 [161,180] 170.5 1682 30256 35 9 [181,200] 190.5 1353 24611 36 10 [201,220] 210.5 1104 20254 37 11 [221,240] 230.5 913 16725 38 12 [241,260] 250.5 751 13605 39 13 [261,280] 270.5 608 11257 40 14 [281,300] 290.5 500 9229 41 15 [301,320] 310.5 418 7766 42 16 [321,340] 330.5 351 6508 43 17 [341,360] 350.5 295 5471 44 18 [361,380] 370.5 253 4596 45 19 [381,400] 390.5 213 3985 46 20 [401,420] 410.5 185 3560 47 21 [421,440] 430.5 166 3129 48 22 [441,460] 450.5 146 2715 49 23 [461,480] 470.5 125 2283 50 24 [481,500] 490.5 109 2038 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 458507 | 292.5 | 49 | 2.2e-36 | 8.8e-36 | 35.05 | 1 | 505 | 560 | 694 | 780 | 899 | 1091 | 1156 | 1461 | 1755 | 2124 | 2417 | 3250 | 3875 | 4621 | 5590 | 7151 | 8489 | 10784 | 13337 | 17142 | 23275 | 30318 | 30460 | 30391 | 30059 | 30091 | 29901 | 30037 | 28823 | 21753 | 16111 | 13064 | 10597 | 8380 | 6714 | 5734 | 4589 | 3635 | 2988 | 2517 | 2181 | 1756 | 1515 | 1239 | 1059 | 942 | 816 | 736 | 618 | 527 |
| c | c | 458927 | 234.2 | 49 | 5.5e-26 | 2.2e-25 | 24.66 | 2 | 563 | 601 | 735 | 818 | 980 | 1056 | 1231 | 1439 | 1784 | 2050 | 2540 | 3063 | 3723 | 4658 | 5554 | 6656 | 8642 | 10529 | 13210 | 16222 | 22104 | 29081 | 30030 | 30160 | 29899 | 29898 | 30170 | 30747 | 30540 | 22760 | 16626 | 13257 | 10699 | 8624 | 6987 | 5631 | 4645 | 3829 | 3178 | 2556 | 2111 | 1796 | 1471 | 1275 | 1096 | 933 | 860 | 738 | 608 | 564 |
| a | a | 327932 | 217.9 | 49 | 3.6e-23 | 1.4e-22 | 21.84 | 3 | 449 | 573 | 602 | 727 | 756 | 819 | 1068 | 1229 | 1442 | 1698 | 2031 | 2380 | 2844 | 3443 | 4279 | 5185 | 6249 | 7763 | 9338 | 11651 | 15535 | 21035 | 21601 | 21448 | 21860 | 21800 | 21594 | 21331 | 20318 | 15146 | 11178 | 9235 | 7468 | 6020 | 4980 | 4087 | 3332 | 2720 | 2290 | 1870 | 1602 | 1339 | 1078 | 949 | 807 | 726 | 641 | 537 | 444 | 435 |
| t | t | 326375 | 185.1 | 49 | 1.1e-17 | 4.4e-17 | 16.36 | 4 | 472 | 463 | 568 | 666 | 772 | 882 | 1024 | 1169 | 1342 | 1607 | 1892 | 2240 | 2762 | 3474 | 4193 | 4888 | 6076 | 7599 | 9539 | 11463 | 15163 | 20549 | 21228 | 21461 | 21766 | 21493 | 21534 | 21252 | 20728 | 14975 | 11694 | 9358 | 7447 | 6038 | 5046 | 4109 | 3572 | 2892 | 2322 | 1899 | 1575 | 1401 | 1186 | 935 | 843 | 783 | 625 | 504 | 456 | 450 |
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