/var/www/html/rsat/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Promotor -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	5379
	Sum of sequence lengths      	1634236
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	303
	Possible positions           	1628857
 Oligonucleotide statistics:
	Total occurrences    	1565971
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	1628857
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	109	2057
	2	-24	[-479,-460]	-469.5	128	2301
	3	-23	[-459,-440]	-449.5	146	2731
	4	-22	[-439,-420]	-429.5	167	3151
	5	-21	[-419,-400]	-409.5	185	3580
	6	-20	[-399,-380]	-389.5	215	4020
	7	-19	[-379,-360]	-369.5	256	4638
	8	-18	[-359,-340]	-349.5	297	5510
	9	-17	[-339,-320]	-329.5	355	6568
	10	-16	[-319,-300]	-309.5	422	7830
	11	-15	[-299,-280]	-289.5	512	9328
	12	-14	[-279,-260]	-269.5	611	11353
	13	-13	[-259,-240]	-249.5	757	13743
	14	-12	[-239,-220]	-229.5	919	16884
	15	-11	[-219,-200]	-209.5	1112	20439
	16	-10	[-199,-180]	-189.5	1369	24862
	17	-9	[-179,-160]	-169.5	1698	30605
	18	-8	[-159,-140]	-149.5	2112	38048
	19	-7	[-139,-120]	-129.5	2580	47038
	20	-6	[-119,-100]	-109.5	3301	58522
	21	-5	[-99,-80]	-89.5	4623	78863
	22	-4	[-79,-60]	-69.5	5379	104960
	23	-3	[-59,-40]	-49.5	5379	107580
	24	-2	[-39,-20]	-29.5	5379	107580
	25	-1	[-19,0]	-9.5	5379	107580
	26	0	[1,20]	10.5	5379	107580
	27	1	[21,40]	30.5	5379	107580
	28	2	[41,60]	50.5	5379	107580
	29	3	[61,80]	70.5	5379	103365
	30	4	[81,100]	90.5	4498	76217
	31	5	[101,120]	110.5	3223	57095
	32	6	[121,140]	130.5	2535	46124
	33	7	[141,160]	150.5	2076	37239
	34	8	[161,180]	170.5	1669	29927
	35	9	[181,200]	190.5	1343	24362
	36	10	[201,220]	210.5	1098	20063
	37	11	[221,240]	230.5	910	16563
	38	12	[241,260]	250.5	748	13462
	39	13	[261,280]	270.5	604	11149
	40	14	[281,300]	290.5	499	9147
	41	15	[301,320]	310.5	415	7699
	42	16	[321,340]	330.5	351	6452
	43	17	[341,360]	350.5	292	5429
	44	18	[361,380]	370.5	252	4556
	45	19	[381,400]	390.5	212	3957
	46	20	[401,420]	410.5	184	3541
	47	21	[421,440]	430.5	165	3109
	48	22	[441,460]	450.5	145	2694
	49	23	[461,480]	470.5	123	2267
	50	24	[481,500]	490.5	109	1929

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gg gg 156423 336.6 49 1.5e-44 2.4e-43 42.62 1 173 179 197 259 305 343 352 467 595 755 780 1139 1361 1566 1874 2513 2965 3830 4600 6007 8289 10444 10586 10436 10276 10356 10060 10138 9551 7450 5455 4465 3628 2834 2160 1826 1546 1171 965 805 734 574 503 411 326 284 270 259 208 153
aa aa 86318 331.1 49 1.6e-43 2.6e-42 41.59 2 128 165 177 215 211 208 335 347 399 484 569 658 783 929 1124 1383 1732 2202 2446 3098 3987 5712 5857 5727 5988 5827 5777 5636 5075 3589 2867 2267 1836 1495 1253 1040 830 678 588 483 415 332 257 243 222 210 162 139 103 130
cc cc 155632 266.9 49 9.4e-32 1.5e-30 29.82 3 183 188 229 279 336 318 399 450 604 676 849 981 1276 1590 1838 2202 3013 3601 4565 5488 7476 9787 10321 10070 9992 9977 10223 10641 10610 7954 5659 4469 3609 2893 2365 1912 1519 1279 1082 865 710 595 491 449 381 298 306 267 196 171
tt tt 85694 250.3 49 8.5e-29 1.4e-27 26.87 4 140 118 143 175 218 236 289 287 355 452 482 596 674 948 1121 1246 1574 1942 2568 2968 3706 5271 5678 5708 5780 5779 5840 5615 5264 3717 3005 2441 1925 1600 1322 1124 1031 768 626 530 409 422 358 259 225 218 183 127 118 113
cg cg 89557 238.9 49 8.6e-27 1.4e-25 24.86 5 72 73 124 121 150 217 191 250 301 357 434 590 709 883 1012 1342 1587 2052 2642 3390 4629 5944 6015 6013 5879 5915 5892 6050 5872 4306 3173 2574 2096 1589 1303 1105 865 676 598 469 403 333 257 228 200 175 157 137 112 95
ta ta 44937 238.5 49 1.0e-26 1.6e-25 24.80 6 70 73 78 129 118 141 162 215 218 242 269 317 400 521 613 759 830 1080 1269 1479 1962 2722 3021 3019 3122 3087 3020 2895 2607 1925 1504 1281 979 784 709 555 489 399 364 274 222 198 175 133 117 111 95 67 63 55
at at 50886 233.8 49 6.7e-26 1.1e-24 23.97 7 81 102 99 122 134 149 184 218 248 283 344 352 492 581 683 804 929 1190 1432 1739 2226 3125 3418 3381 3520 3464 3327 3266 3044 2223 1663 1455 1171 899 779 571 561 474 388 304 240 248 172 163 141 138 114 90 81 74
ca ca 98347 124.5 49 1.7e-08 2.7e-07 6.58 8 143 194 190 196 232 231 312 342 437 488 626 705 787 1002 1296 1466 1849 2222 2737 3446 4582 6121 6376 6404 6420 6443 6450 6451 6381 4866 3447 2834 2330 1902 1514 1208 1023 869 706 559 449 423 336 289 223 227 196 148 150 119
ct ct 114940 117.5 49 1.5e-07 2.4e-06 5.62 9 164 146 192 222 262 290 328 397 442 528 630 786 950 1182 1407 1644 2187 2651 3261 3891 5407 7221 7311 7664 7595 7550 7597 7598 7625 5554 4316 3348 2639 2221 1782 1393 1227 1001 786 659 546 442 384 307 290 232 200 185 150 150
gc gc 133099 116.4 49 2.1e-07 3.3e-06 5.48 10 152 155 205 206 241 318 333 439 483 585 705 916 1090 1348 1609 1960 2448 3016 3815 4994 6719 8747 8798 8797 8623 8681 8718 8837 8604 6403 4771 3792 3056 2509 1968 1665 1362 1072 914 788 566 524 444 354 305 290 234 207 185 148
ag ag 115023 100.3 49 2.2e-05 0.00035 3.45 11 140 182 189 223 221 282 323 414 488 561 689 852 977 1195 1509 1893 2197 2657 3351 4301 5818 7610 7547 7510 7452 7587 7637 7492 7024 5294 3842 3185 2648 2098 1745 1510 1115 899 773 643 569 446 413 325 265 234 214 188 171 125
tg tg 97010 78.4 49 4.8e-03 0.077 1.11 12 121 132 186 179 222 269 280 358 384 454 540 686 861 1012 1244 1461 1780 2335 2871 3600 4876 6408 6337 6376 6405 6263 6309 6366 6143 4288 3439 2695 2100 1778 1473 1238 990 833 653 554 470 382 324 275 254 247 164 147 124 124
ac ac 73422 64.3 49 7.0e-02 1.1 -0.05 13 99 124 137 167 189 180 226 250 306 367 429 517 591 735 960 1103 1389 1711 2105 2509 3495 4575 4774 4823 4893 4908 4845 4928 4829 3491 2518 2140 1654 1406 1097 890 765 611 495 407 355 284 221 202 168 135 145 112 82 80
gt gt 72612 61.6 49 1.1e-01 1.7 -0.23 14 75 89 135 138 165 192 215 249 297 328 407 499 611 755 924 1125 1341 1732 2154 2696 3587 4833 4770 4793 4808 4679 4738 4745 4598 3246 2565 2035 1635 1248 1130 954 728 630 483 383 378 288 254 195 191 177 124 103 94 93
tc tc 96240 53.6 49 3.0e-01 4.9 -0.69 15 141 139 160 183 214 235 293 307 384 457 600 639 825 992 1209 1420 1889 2236 2824 3410 4604 6138 6189 6350 6449 6355 6362 6370 6335 4486 3424 2749 2248 1720 1439 1107 988 824 632 508 439 380 308 250 234 200 170 153 143 129
ga ga 95831 51.1 49 3.9e-01 6.2 -0.80 16 104 137 156 177 188 237 256 305 377 456 525 695 811 950 1182 1550 1733 2205 2766 3438 4674 6285 6294 6363 6348 6366 6380 6311 6003 4554 3268 2725 2247 1763 1441 1273 938 748 617 530 496 364 309 274 235 188 185 165 130 109 
 Host name	rsat
 Job started	2026-01-10.165314
 Job done	2026-01-10.165323
 Seconds	9.21
	user	9.21
	system	0.02
	cuser	0
;	csystem	0