compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files html_index $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html match_table_txt $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab match_table_html $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_disco_compa.html prefix $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_disco_compa alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html Matrices file1 10 matrices $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 13 4141 file1 2 11 3675 file1 3 10 1727 file1 4 13 2410 file1 5 12 5735 file1 6 16 3090 file1 7 12 2965 file1 8 11 4881 file1 9 12 6906 file1 10 12 3935 file2 10 matrices $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 13 4141 file2 2 11 3675 file2 3 10 1727 file2 4 13 2410 file2 5 12 5735 file2 6 16 3090 file2 7 12 2965 file2 8 11 4881 file2 9 12 6906 file2 10 12 3935 Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m2 | 0.828 | 0.828 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m5 | 0.828 | 0.828 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m1 | 0.970 | 0.788 | 13 | 16 | 13 | 16 | 0.8125 | 1.0000 | 0.8125 | D | -2 |
| oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m1 | 0.970 | 0.788 | 16 | 13 | 13 | 16 | 0.8125 | 0.8125 | 1.0000 | D | 2 |
| oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m2 | 0.780 | 0.715 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | R | 1 |
| oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m5 | 0.780 | 0.715 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | R | 0 |
| oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m4 | 0.767 | 0.708 | 12 | 13 | 12 | 13 | 0.9231 | 1.0000 | 0.9231 | R | 0 |
| oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m5 | 0.767 | 0.708 | 13 | 12 | 12 | 13 | 0.9231 | 0.9231 | 1.0000 | R | 1 |
| oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m3 | 0.748 | 0.686 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | R | 1 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m5 | 0.748 | 0.686 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | R | 0 |
| oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m5 | oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m5 | 0.740 | 0.679 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | D | 0 |
| oligos_6nt_mkv4_m5 | oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m5 | oligos_7nt_mkv5_m3 | 0.740 | 0.679 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m3 | 0.707 | 0.648 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | R | 1 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m2 | 0.707 | 0.648 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | R | 0 |
| oligos_6nt_mkv4_m5 | oligos_7nt_mkv5_m4 | oligos_6nt_mkv4_m5 | oligos_7nt_mkv5_m4 | 0.865 | 0.618 | 12 | 12 | 10 | 14 | 0.7143 | 0.8333 | 0.8333 | D | 2 |
| oligos_7nt_mkv5_m4 | oligos_6nt_mkv4_m5 | oligos_7nt_mkv5_m4 | oligos_6nt_mkv4_m5 | 0.865 | 0.618 | 12 | 12 | 10 | 14 | 0.7143 | 0.8333 | 0.8333 | D | -2 |
| oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m3 | 0.844 | 0.543 | 12 | 11 | 9 | 14 | 0.6429 | 0.7500 | 0.8182 | D | 3 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m4 | 0.844 | 0.543 | 11 | 12 | 9 | 14 | 0.6429 | 0.8182 | 0.7500 | D | -3 |
Host name rsat Job started 2026-01-10.165428 Job done 2026-01-10.165438 Seconds 1.29 user 1.29 system 0.4 cuser 7.76 ; csystem 0.91