RSAT - peak-motifs result

Analysis: Promotor (10/01/2026 16:54)

peak-motifs  -v 1 -title Promotor -i $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU

motif discovery
oligos_6nt_mkv4	oligos_6nt_mkv4_m1 assembly: caggacctg (sig=25.80; e-value=1.6e-26) RC: caggtcctg oligos_6nt_mkv4_m2 assembly: gcggagc (sig=14.65; e-value=2.2e-15) RC: gctccgc oligos_6nt_mkv4_m3 assembly: cttttc (sig=11.84; e-value=1.4e-12) RC: gaaaag oligos_6nt_mkv4_m4 assembly: ggcagggca (sig=10.77; e-value=1.7e-11) RC: tgccctgcc oligos_6nt_mkv4_m5 assembly: cgccccgc (sig=8.52; e-value=3e-09) RC: gcggggcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	positions_6nt_m1 assembly: aggacc (sig=0.66; e-value=0.22) RC: ggtcct positions_6nt_m2 assembly: ccgccc (sig=0.27; e-value=0.54) RC: gggcgg positions_6nt_m3 assembly: cccgga (sig=0.01; e-value=0.98) RC: tccggg positions_6nt_m4 assembly: cttttc (sig=0.00; e-value=1) RC: gaaaag positions_6nt_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv5	oligos_7nt_mkv5_m1 assembly: tccaggacctgg (sig=17.99; e-value=1e-18) RC: ccaggtcctgga oligos_7nt_mkv5_m2 assembly: cgcaggcg (sig=10.88; e-value=1.3e-11) RC: cgcctgcg oligos_7nt_mkv5_m3 assembly: cgccccc (sig=9.02; e-value=9.5e-10) RC: gggggcg oligos_7nt_mkv5_m4 assembly: ccccgccc (sig=8.32; e-value=4.8e-09) RC: gggcgggg oligos_7nt_mkv5_m5 assembly: cggctgcg (sig=8.08; e-value=8.3e-09) RC: cgcagccg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv4_m1	k-mer sig=25.80; evalue=1.6e-26 kcCAGGACCTggv BCCAGGTCCTGGM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 812 (15.10%) Max nb of predicted sites per peak: 23  (chr19:16144032-16144680) Mean nb of predicted sites per peak: 1.54	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv4_m2	k-mer sig=14.65; evalue=2.2e-15 scgCGGAGCss SSGCTCCGCGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 662 (12.31%) Max nb of predicted sites per peak: 7  (chr7:106300337-106301503) Mean nb of predicted sites per peak: 1.21	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv4_m3	k-mer sig=11.84; evalue=1.4e-12 twCTTTTChy RDGAAAAGWA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 843 (15.67%) Max nb of predicted sites per peak: 5  (chr8:82643918-82645106) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv4_m4	k-mer sig=10.77; evalue=1.7e-11 sggGCAGGGCAgg CCTGCCCTGCCCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 367 (6.82%) Max nb of predicted sites per peak: 5  (chr2:24306903-24307408) Mean nb of predicted sites per peak: 1.13	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv4_m5	k-mer sig=8.52; evalue=3e-09 csCGCCCCGCcs SGGCGGGGCGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 804 (14.95%) Max nb of predicted sites per peak: 9  (chr7:140372903-140373058) Mean nb of predicted sites per peak: 1.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv5_m1	k-mer sig=17.99; evalue=1e-18 cttccAGGACCTggvr YBCCAGGTCCTGGAAG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 918 (17.07%) Max nb of predicted sites per peak: 13  (chr19:16144032-16144680) Mean nb of predicted sites per peak: 1.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv5_m2	k-mer sig=10.88; evalue=1.3e-11 ssCGCAGGCGss SSCGCCTGCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 519 (9.65%) Max nb of predicted sites per peak: 5  (chr16:89724084-89724603) Mean nb of predicted sites per peak: 1.32	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv5_m3	k-mer sig=9.02; evalue=9.5e-10 ssCGCCcCCgs SCGGGGGCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1022 (19.00%) Max nb of predicted sites per peak: 14  (chrX:57617984-57619176) Mean nb of predicted sites per peak: 1.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv5_m4	k-mer sig=8.32; evalue=4.8e-09 ssCCCCGCCCcs SGGGGCGGGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 882 (16.40%) Max nb of predicted sites per peak: 10  (chr2:242295151-242295343) Mean nb of predicted sites per peak: 1.43	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv5_m5	k-mer sig=8.08; evalue=8.3e-09 ssCGGCTGCGss SSCGCAGCCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 812 (15.10%) Max nb of predicted sites per peak: 10  (chrX:57617984-57619176) Mean nb of predicted sites per peak: 1.61	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Promotor -i $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU

Error: Cannot scale matrix with only null values
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_sig_matrices_rescaled.tf

Warning: Input file contained not a single matrix

Error: OpenInputFile: File tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_sig_sites.ft does not exist.
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Not a single pattern was found in file tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165257_2026-01-10.165257_gp1QRU/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab