compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file2 $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html html_index $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab prefix $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_disco_compa match_table_html $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_disco_compa.html match_table_txt $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Matrices file1 16 matrices $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 15 3904 file1 2 13 3350 file1 3 10 3125 file1 4 13 3861 file1 5 12 3798 file1 6 15 3135 file1 7 10 1798 file1 8 10 2965 file1 9 11 3063 file1 10 10 3431 file1 11 11 5372 ... 6 more matrices file2 16 matrices $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.165328_2026-01-10.165328_VAz8tE/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 15 3904 file2 2 13 3350 file2 3 10 3125 file2 4 13 3861 file2 5 12 3798 file2 6 15 3135 file2 7 10 1798 file2 8 10 2965 file2 9 11 3063 file2 10 10 3431 file2 11 11 5372 ... 6 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m5 | positions_6nt_m5 | positions_6nt_m5 | positions_6nt_m5 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | oligos_7nt_mkv5_m2 | positions_6nt_m1 | oligos_7nt_mkv5_m2 | 0.999 | 0.999 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m2 | positions_6nt_m1 | oligos_7nt_mkv5_m2 | positions_6nt_m1 | 0.999 | 0.999 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_7nt_m1 | positions_6nt_m1 | positions_7nt_m1 | 0.997 | 0.997 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m1 | positions_6nt_m1 | positions_7nt_m1 | positions_6nt_m1 | 0.997 | 0.997 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m2 | positions_7nt_m1 | oligos_7nt_mkv5_m2 | positions_7nt_m1 | 0.996 | 0.996 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m1 | oligos_7nt_mkv5_m2 | positions_7nt_m1 | oligos_7nt_mkv5_m2 | 0.996 | 0.996 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | positions_7nt_m1 | oligos_6nt_mkv4_m1 | positions_7nt_m1 | 0.987 | 0.987 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m1 | oligos_6nt_mkv4_m1 | positions_7nt_m1 | oligos_6nt_mkv4_m1 | 0.987 | 0.987 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | positions_6nt_m1 | oligos_6nt_mkv4_m1 | positions_6nt_m1 | 0.977 | 0.977 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | oligos_6nt_mkv4_m1 | positions_6nt_m1 | oligos_6nt_mkv4_m1 | 0.977 | 0.977 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m2 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m2 | 0.974 | 0.974 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m2 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m2 | oligos_6nt_mkv4_m1 | 0.974 | 0.974 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m4 | 0.853 | 0.788 | 12 | 13 | 12 | 13 | 0.9231 | 1.0000 | 0.9231 | R | 0 |
| oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m5 | 0.853 | 0.788 | 13 | 12 | 12 | 13 | 0.9231 | 0.9231 | 1.0000 | R | 1 |
| positions_6nt_m4 | positions_6nt_m3 | positions_6nt_m4 | positions_6nt_m3 | 0.705 | 0.641 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | D | 1 |
| positions_6nt_m3 | positions_6nt_m4 | positions_6nt_m3 | positions_6nt_m4 | 0.705 | 0.641 | 10 | 11 | 10 | 11 | 0.9091 | 1.0000 | 0.9091 | D | -1 |
| oligos_6nt_mkv4_m5 | positions_6nt_m4 | oligos_6nt_mkv4_m5 | positions_6nt_m4 | 0.801 | 0.616 | 12 | 11 | 10 | 13 | 0.7692 | 0.8333 | 0.9091 | R | -1 |
| positions_6nt_m4 | oligos_6nt_mkv4_m5 | positions_6nt_m4 | oligos_6nt_mkv4_m5 | 0.801 | 0.616 | 11 | 12 | 10 | 13 | 0.7692 | 0.9091 | 0.8333 | R | -2 |
| oligos_7nt_mkv5_m4 | positions_6nt_m1 | oligos_7nt_mkv5_m4 | positions_6nt_m1 | 0.756 | 0.555 | 11 | 15 | 11 | 15 | 0.7333 | 1.0000 | 0.7333 | D | -1 |
| positions_6nt_m1 | oligos_7nt_mkv5_m4 | positions_6nt_m1 | oligos_7nt_mkv5_m4 | 0.756 | 0.555 | 15 | 11 | 11 | 15 | 0.7333 | 0.7333 | 1.0000 | D | 1 |
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m4 | 0.752 | 0.551 | 15 | 11 | 11 | 15 | 0.7333 | 0.7333 | 1.0000 | D | 1 |
| oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m2 | 0.752 | 0.551 | 11 | 15 | 11 | 15 | 0.7333 | 1.0000 | 0.7333 | D | -1 |
| positions_7nt_m1 | oligos_7nt_mkv5_m4 | positions_7nt_m1 | oligos_7nt_mkv5_m4 | 0.749 | 0.549 | 15 | 11 | 11 | 15 | 0.7333 | 0.7333 | 1.0000 | D | 1 |
| oligos_7nt_mkv5_m4 | positions_7nt_m1 | oligos_7nt_mkv5_m4 | positions_7nt_m1 | 0.749 | 0.549 | 11 | 15 | 11 | 15 | 0.7333 | 1.0000 | 0.7333 | D | -1 |
| oligos_7nt_mkv5_m4 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m4 | oligos_6nt_mkv4_m1 | 0.747 | 0.548 | 11 | 15 | 11 | 15 | 0.7333 | 1.0000 | 0.7333 | D | -1 |
| oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m4 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m4 | 0.747 | 0.548 | 15 | 11 | 11 | 15 | 0.7333 | 0.7333 | 1.0000 | D | 1 |
| oligos_6nt_mkv4_m2 | oligos_7nt_mkv5_m5 | oligos_6nt_mkv4_m2 | oligos_7nt_mkv5_m5 | 0.714 | 0.476 | 13 | 12 | 10 | 15 | 0.6667 | 0.7692 | 0.8333 | D | -2 |
| oligos_7nt_mkv5_m5 | oligos_6nt_mkv4_m2 | oligos_7nt_mkv5_m5 | oligos_6nt_mkv4_m2 | 0.714 | 0.476 | 12 | 13 | 10 | 15 | 0.6667 | 0.8333 | 0.7692 | D | 2 |
Host name rsat Job started 2026-01-10.165516 Job done 2026-01-10.165529 Seconds 1.69 user 1.69 system 0.59 cuser 10.22 ; csystem 1.27