position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title ZBTB_prom_tous_sans_ctrl -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Oligo length 2 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 6906 Sum of sequence lengths 2105541 Min sequence length 0 Max sequence length 1000 Average sequence length 304 Possible positions 2098635 Oligonucleotide statistics: Total occurrences 1992263 Position interval parameters: Position interval 20 Number of windows 50 Total positions 2098635 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 167 3160 2 -24 [-479,-460] -469.5 193 3574 3 -23 [-459,-440] -449.5 220 4122 4 -22 [-439,-420] -429.5 253 4738 5 -21 [-419,-400] -409.5 279 5384 6 -20 [-399,-380] -389.5 313 5931 7 -19 [-379,-360] -369.5 365 6707 8 -18 [-359,-340] -349.5 417 7805 9 -17 [-339,-320] -329.5 492 9127 10 -16 [-319,-300] -309.5 579 10754 11 -15 [-299,-280] -289.5 692 12701 12 -14 [-279,-260] -269.5 812 15152 13 -13 [-259,-240] -249.5 985 18070 14 -12 [-239,-220] -229.5 1175 21759 15 -11 [-219,-200] -209.5 1408 25994 16 -10 [-199,-180] -189.5 1729 31487 17 -9 [-179,-160] -169.5 2158 38758 18 -8 [-159,-140] -149.5 2677 48398 19 -7 [-139,-120] -129.5 3260 59553 20 -6 [-119,-100] -109.5 4164 74030 21 -5 [-99,-80] -89.5 5897 99942 22 -4 [-79,-60] -69.5 6906 134652 23 -3 [-59,-40] -49.5 6906 138120 24 -2 [-39,-20] -29.5 6906 138120 25 -1 [-19,0] -9.5 6906 138120 26 0 [1,20] 10.5 6906 138120 27 1 [21,40] 30.5 6906 138120 28 2 [41,60] 50.5 6906 138120 29 3 [61,80] 70.5 6906 132531 30 4 [81,100] 90.5 5725 96467 31 5 [101,120] 110.5 4072 72249 32 6 [121,140] 130.5 3201 58408 33 7 [141,160] 150.5 2634 47378 34 8 [161,180] 170.5 2117 37875 35 9 [181,200] 190.5 1696 30858 36 10 [201,220] 210.5 1392 25542 37 11 [221,240] 230.5 1164 21386 38 12 [241,260] 250.5 975 17736 39 13 [261,280] 270.5 802 14908 40 14 [281,300] 290.5 676 12480 41 15 [301,320] 310.5 569 10585 42 16 [321,340] 330.5 486 8979 43 17 [341,360] 350.5 410 7703 44 18 [361,380] 370.5 360 6603 45 19 [381,400] 390.5 310 5861 46 20 [401,420] 410.5 276 5330 47 21 [421,440] 430.5 249 4672 48 22 [441,460] 450.5 218 4069 49 23 [461,480] 470.5 188 3527 50 24 [481,500] 490.5 166 2970 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| aa | aa | 119086 | 448.2 | 49 | 0.0e+00 | 0 | 300 | 1 | 218 | 294 | 287 | 354 | 332 | 345 | 464 | 497 | 589 | 725 | 830 | 936 | 1086 | 1269 | 1522 | 1826 | 2323 | 2959 | 3368 | 4135 | 5408 | 7785 | 8053 | 7967 | 8063 | 8154 | 7993 | 7769 | 7004 | 4767 | 3839 | 3089 | 2574 | 2035 | 1661 | 1466 | 1155 | 978 | 838 | 670 | 611 | 482 | 404 | 389 | 357 | 325 | 292 | 232 | 170 | 197 |
| gg | gg | 188219 | 448.2 | 49 | 0.0e+00 | 0 | 300 | 2 | 233 | 250 | 273 | 356 | 410 | 450 | 479 | 637 | 776 | 930 | 979 | 1418 | 1634 | 1895 | 2289 | 3003 | 3550 | 4558 | 5354 | 7077 | 9845 | 12649 | 12665 | 12373 | 12229 | 12386 | 12164 | 12185 | 11613 | 8886 | 6440 | 5283 | 4321 | 3414 | 2565 | 2182 | 1798 | 1427 | 1221 | 1058 | 927 | 751 | 660 | 517 | 457 | 418 | 361 | 349 | 298 | 226 |
| cg | cg | 97594 | 375.2 | 49 | 8.0e-52 | 1.3e-50 | 49.89 | 3 | 95 | 105 | 145 | 143 | 188 | 246 | 226 | 285 | 350 | 401 | 488 | 651 | 777 | 962 | 1109 | 1477 | 1728 | 2198 | 2842 | 3668 | 4999 | 6487 | 6539 | 6496 | 6374 | 6445 | 6418 | 6588 | 6415 | 4674 | 3418 | 2788 | 2277 | 1714 | 1399 | 1195 | 950 | 748 | 653 | 524 | 456 | 375 | 302 | 260 | 221 | 202 | 188 | 159 | 135 | 111 |
| cc | cc | 187347 | 338.1 | 49 | 8.2e-45 | 1.3e-43 | 42.88 | 4 | 264 | 285 | 353 | 392 | 447 | 445 | 536 | 592 | 798 | 852 | 1081 | 1201 | 1563 | 1909 | 2157 | 2675 | 3489 | 4231 | 5416 | 6509 | 8927 | 11731 | 12424 | 12105 | 12116 | 12076 | 12283 | 12725 | 12652 | 9449 | 6696 | 5310 | 4336 | 3440 | 2864 | 2234 | 1831 | 1554 | 1332 | 1091 | 887 | 741 | 641 | 564 | 484 | 391 | 402 | 348 | 283 | 235 |
| ta | ta | 63201 | 333.0 | 49 | 7.2e-44 | 1.2e-42 | 41.94 | 5 | 117 | 132 | 131 | 200 | 186 | 218 | 243 | 297 | 316 | 382 | 419 | 494 | 605 | 749 | 843 | 1035 | 1158 | 1447 | 1760 | 2066 | 2710 | 3788 | 4214 | 4221 | 4323 | 4337 | 4221 | 4073 | 3634 | 2607 | 2081 | 1786 | 1367 | 1062 | 963 | 797 | 719 | 589 | 510 | 399 | 320 | 298 | 257 | 222 | 206 | 178 | 169 | 125 | 118 | 109 |
| at | at | 72875 | 325.3 | 49 | 1.9e-42 | 3.1e-41 | 40.51 | 6 | 134 | 169 | 170 | 201 | 225 | 252 | 276 | 320 | 371 | 431 | 529 | 559 | 719 | 819 | 971 | 1140 | 1314 | 1687 | 2035 | 2410 | 3165 | 4460 | 4782 | 4831 | 4945 | 4970 | 4822 | 4672 | 4282 | 3057 | 2347 | 2080 | 1642 | 1275 | 1069 | 857 | 813 | 688 | 569 | 455 | 373 | 374 | 278 | 263 | 233 | 215 | 187 | 167 | 139 | 133 |
| tt | tt | 118001 | 312.1 | 49 | 5.4e-40 | 8.7e-39 | 38.06 | 7 | 213 | 206 | 227 | 292 | 350 | 374 | 439 | 429 | 530 | 645 | 731 | 851 | 969 | 1301 | 1497 | 1683 | 2140 | 2702 | 3417 | 3981 | 5010 | 7084 | 7695 | 7855 | 7918 | 7968 | 7981 | 7793 | 7181 | 5118 | 4048 | 3339 | 2682 | 2223 | 1750 | 1482 | 1385 | 1095 | 913 | 773 | 610 | 597 | 530 | 417 | 334 | 345 | 275 | 226 | 209 | 188 |
| gc | gc | 157699 | 189.6 | 49 | 2.0e-18 | 3.2e-17 | 16.50 | 8 | 212 | 225 | 270 | 279 | 341 | 415 | 443 | 561 | 609 | 722 | 864 | 1112 | 1342 | 1599 | 1906 | 2307 | 2870 | 3544 | 4445 | 5822 | 7853 | 10394 | 10411 | 10328 | 10168 | 10237 | 10316 | 10439 | 10254 | 7531 | 5594 | 4416 | 3585 | 2923 | 2298 | 1935 | 1596 | 1308 | 1086 | 954 | 707 | 654 | 550 | 445 | 403 | 382 | 310 | 272 | 260 | 202 |
| ct | ct | 148144 | 171.7 | 49 | 1.6e-15 | 2.5e-14 | 13.60 | 9 | 250 | 248 | 306 | 329 | 381 | 433 | 490 | 549 | 610 | 726 | 866 | 1035 | 1226 | 1507 | 1730 | 2072 | 2699 | 3344 | 4064 | 4978 | 6887 | 9219 | 9511 | 9844 | 9766 | 9649 | 9711 | 9822 | 9793 | 7145 | 5515 | 4273 | 3379 | 2808 | 2238 | 1793 | 1559 | 1299 | 1062 | 909 | 728 | 602 | 525 | 442 | 413 | 348 | 293 | 277 | 259 | 232 |
| ca | ca | 129750 | 106.9 | 49 | 3.4e-06 | 5.4e-05 | 4.27 | 10 | 232 | 277 | 289 | 290 | 370 | 372 | 453 | 493 | 602 | 690 | 847 | 946 | 1102 | 1320 | 1673 | 1873 | 2378 | 2904 | 3638 | 4469 | 5947 | 8136 | 8353 | 8436 | 8514 | 8485 | 8563 | 8455 | 8361 | 6222 | 4478 | 3647 | 2999 | 2440 | 1972 | 1559 | 1325 | 1166 | 948 | 773 | 659 | 579 | 473 | 413 | 338 | 337 | 283 | 249 | 238 | 184 |
| ag | ag | 148134 | 92.9 | 49 | 1.6e-04 | 0.0025 | 2.60 | 11 | 236 | 270 | 289 | 342 | 359 | 406 | 467 | 596 | 670 | 766 | 915 | 1098 | 1285 | 1543 | 1909 | 2366 | 2785 | 3389 | 4263 | 5436 | 7315 | 9828 | 9659 | 9634 | 9630 | 9714 | 9818 | 9588 | 9085 | 6713 | 4905 | 4027 | 3349 | 2630 | 2231 | 1869 | 1443 | 1211 | 1012 | 866 | 764 | 608 | 551 | 459 | 413 | 377 | 327 | 269 | 251 | 198 |
| tc | tc | 122823 | 76.2 | 49 | 7.7e-03 | 0.12 | 0.91 | 12 | 218 | 222 | 267 | 267 | 328 | 350 | 403 | 431 | 516 | 620 | 810 | 815 | 1048 | 1239 | 1488 | 1775 | 2313 | 2800 | 3494 | 4294 | 5801 | 7770 | 7906 | 8111 | 8301 | 8074 | 8068 | 8138 | 7943 | 5706 | 4313 | 3492 | 2857 | 2162 | 1817 | 1421 | 1238 | 1066 | 849 | 700 | 603 | 507 | 425 | 366 | 320 | 277 | 251 | 228 | 223 | 192 |
| tg | tg | 128289 | 72.7 | 49 | 1.5e-02 | 0.25 | 0.61 | 13 | 196 | 215 | 265 | 288 | 324 | 388 | 428 | 518 | 555 | 645 | 744 | 975 | 1140 | 1344 | 1638 | 1876 | 2348 | 3066 | 3683 | 4628 | 6321 | 8419 | 8356 | 8383 | 8417 | 8263 | 8319 | 8389 | 8119 | 5627 | 4490 | 3539 | 2779 | 2345 | 1908 | 1616 | 1296 | 1100 | 924 | 762 | 640 | 536 | 461 | 407 | 374 | 361 | 256 | 231 | 205 | 182 |
| ac | ac | 94861 | 68.1 | 49 | 3.7e-02 | 0.58 | 0.23 | 14 | 159 | 190 | 197 | 234 | 278 | 278 | 340 | 353 | 430 | 512 | 575 | 690 | 784 | 955 | 1205 | 1378 | 1749 | 2162 | 2717 | 3230 | 4465 | 5881 | 6150 | 6219 | 6257 | 6283 | 6305 | 6346 | 6195 | 4393 | 3233 | 2701 | 2095 | 1768 | 1410 | 1129 | 989 | 802 | 676 | 564 | 488 | 383 | 312 | 283 | 250 | 214 | 198 | 189 | 143 | 124 |
| gt | gt | 93660 | 56.6 | 49 | 2.1e-01 | 3.4 | -0.53 | 15 | 134 | 146 | 190 | 211 | 229 | 262 | 298 | 356 | 409 | 460 | 550 | 681 | 811 | 1003 | 1201 | 1405 | 1717 | 2199 | 2709 | 3410 | 4478 | 6204 | 6141 | 6172 | 6216 | 6066 | 6047 | 6078 | 5874 | 4137 | 3243 | 2619 | 2112 | 1596 | 1458 | 1210 | 964 | 798 | 679 | 516 | 498 | 386 | 346 | 293 | 276 | 246 | 193 | 162 | 139 | 132 |
| ga | ga | 122580 | 45.2 | 49 | 6.3e-01 | 10 | -1.00 | 16 | 174 | 212 | 238 | 269 | 306 | 345 | 382 | 452 | 534 | 629 | 698 | 898 | 1023 | 1206 | 1498 | 1942 | 2198 | 2813 | 3468 | 4326 | 5845 | 7992 | 7991 | 8089 | 8049 | 8090 | 8164 | 8058 | 7687 | 5734 | 4161 | 3419 | 2851 | 2224 | 1813 | 1577 | 1205 | 981 | 819 | 731 | 655 | 499 | 427 | 384 | 349 | 306 | 277 | 235 | 189 | 168 |
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