/var/www/html/rsat/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_disco_compa
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
 Matrices
	file1	17 matrices	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	13	5267
		file1	2	11	5272
		file1	3	10	2242
		file1	4	13	2486
		file1	5	10	2238
		file1	6	11	4900
		file1	7	11	7445
		file1	8	10	2202
		file1	9	10	1854
		file1	10	10	2369
		file1	11	16	3750
		...	7 more matrices
	file2	17 matrices	$RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.172331_2026-01-10.172331_h5H1zA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		13		5267
		file2		2		11		5272
		file2		3		10		2242
		file2		4		13		2486
		file2		5		10		2238
		file2		6		11		4900
		file2		7		11		7445
		file2		8		10		2202
		file2		9		10		1854
		file2		10		10		2369
		file2		11		16		3750
		...	7 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 oligos_6nt_mkv4_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 positions_6nt_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_7nt_m1 positions_7nt_m1 positions_7nt_m1 positions_7nt_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 oligos_6nt_mkv4_m1 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_6nt_m3 positions_6nt_m3 positions_6nt_m3 positions_6nt_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m5 positions_6nt_m5 positions_6nt_m5 positions_6nt_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 oligos_6nt_mkv4_m4 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
positions_6nt_m4 positions_6nt_m4 positions_6nt_m4 positions_6nt_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_7nt_m2 positions_7nt_m2 positions_7nt_m2 positions_7nt_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 0.825 0.825 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m2 0.825 0.825 12 12 12 12 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv4_m1 positions_6nt_m1 oligos_6nt_mkv4_m1 positions_6nt_m1 0.960 0.812 13 11 11 13 0.8462 0.8462 1.0000 D 1
positions_6nt_m1 oligos_6nt_mkv4_m1 positions_6nt_m1 oligos_6nt_mkv4_m1 0.960 0.812 11 13 11 13 0.8462 1.0000 0.8462 D -1
oligos_6nt_mkv4_m1 oligos_7nt_mkv5_m1 oligos_6nt_mkv4_m1 oligos_7nt_mkv5_m1 0.970 0.788 13 16 13 16 0.8125 1.0000 0.8125 D -2
oligos_7nt_mkv5_m1 oligos_6nt_mkv4_m1 oligos_7nt_mkv5_m1 oligos_6nt_mkv4_m1 0.970 0.788 16 13 13 16 0.8125 0.8125 1.0000 D 2
positions_7nt_m2 positions_6nt_m2 positions_7nt_m2 positions_6nt_m2 0.905 0.755 11 11 10 12 0.8333 0.9091 0.9091 D 1
positions_6nt_m2 positions_7nt_m2 positions_6nt_m2 positions_7nt_m2 0.905 0.755 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m4 0.822 0.754 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m5 0.822 0.754 11 12 11 12 0.9167 1.0000 0.9167 R 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m5 0.703 0.703 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m5 oligos_7nt_mkv5_m3 0.703 0.703 12 12 12 12 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 positions_6nt_m4 positions_6nt_m2 positions_6nt_m4 0.761 0.692 11 10 10 11 0.9091 0.9091 1.0000 R 1
positions_6nt_m4 positions_6nt_m2 positions_6nt_m4 positions_6nt_m2 0.761 0.692 10 11 10 11 0.9091 1.0000 0.9091 R 0
oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m4 0.728 0.667 12 11 11 12 0.9167 0.9167 1.0000 R 1
oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m3 0.728 0.667 11 12 11 12 0.9167 1.0000 0.9167 R 0
positions_6nt_m5 oligos_7nt_mkv5_m4 positions_6nt_m5 oligos_7nt_mkv5_m4 0.729 0.663 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_7nt_mkv5_m4 positions_6nt_m5 oligos_7nt_mkv5_m4 positions_6nt_m5 0.729 0.663 11 10 10 11 0.9091 0.9091 1.0000 D 0
positions_7nt_m1 positions_6nt_m3 positions_7nt_m1 positions_6nt_m3 0.727 0.661 11 10 10 11 0.9091 0.9091 1.0000 D 0
positions_6nt_m3 positions_7nt_m1 positions_6nt_m3 positions_7nt_m1 0.727 0.661 10 11 10 11 0.9091 1.0000 0.9091 D 0
positions_7nt_m2 oligos_7nt_mkv5_m3 positions_7nt_m2 oligos_7nt_mkv5_m3 0.710 0.651 11 12 11 12 0.9167 1.0000 0.9167 R 0
oligos_7nt_mkv5_m3 positions_7nt_m2 oligos_7nt_mkv5_m3 positions_7nt_m2 0.710 0.651 12 11 11 12 0.9167 0.9167 1.0000 R 1
positions_6nt_m1 oligos_7nt_mkv5_m1 positions_6nt_m1 oligos_7nt_mkv5_m1 0.942 0.647 11 16 11 16 0.6875 1.0000 0.6875 D -3
oligos_7nt_mkv5_m1 positions_6nt_m1 oligos_7nt_mkv5_m1 positions_6nt_m1 0.942 0.647 16 11 11 16 0.6875 0.6875 1.0000 D 3
positions_7nt_m1 oligos_6nt_mkv4_m1 positions_7nt_m1 oligos_6nt_mkv4_m1 0.871 0.622 11 13 10 14 0.7143 0.9091 0.7692 D 1
oligos_6nt_mkv4_m1 positions_7nt_m1 oligos_6nt_mkv4_m1 positions_7nt_m1 0.871 0.622 13 11 10 14 0.7143 0.7692 0.9091 D -1
positions_7nt_m2 oligos_6nt_mkv4_m2 positions_7nt_m2 oligos_6nt_mkv4_m2 0.742 0.618 11 11 10 12 0.8333 0.9091 0.9091 R -1
oligos_6nt_mkv4_m2 positions_7nt_m2 oligos_6nt_mkv4_m2 positions_7nt_m2 0.742 0.618 11 11 10 12 0.8333 0.9091 0.9091 R -1
positions_7nt_m2 oligos_6nt_mkv4_m4 positions_7nt_m2 oligos_6nt_mkv4_m4 0.714 0.604 11 13 11 13 0.8462 1.0000 0.8462 R -2
oligos_6nt_mkv4_m4 positions_7nt_m2 oligos_6nt_mkv4_m4 positions_7nt_m2 0.714 0.604 13 11 11 13 0.8462 0.8462 1.0000 R 0
oligos_7nt_mkv5_m1 positions_7nt_m1 oligos_7nt_mkv5_m1 positions_7nt_m1 0.870 0.598 16 11 11 16 0.6875 0.6875 1.0000 D 1
positions_7nt_m1 oligos_7nt_mkv5_m1 positions_7nt_m1 oligos_7nt_mkv5_m1 0.870 0.598 11 16 11 16 0.6875 1.0000 0.6875 D -1
oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m3 0.713 0.594 10 12 10 12 0.8333 1.0000 0.8333 D 0
oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m5 oligos_7nt_mkv5_m3 oligos_6nt_mkv4_m5 0.713 0.594 12 10 10 12 0.8333 0.8333 1.0000 D 0
positions_7nt_m1 positions_6nt_m1 positions_7nt_m1 positions_6nt_m1 0.858 0.594 11 11 9 13 0.6923 0.8182 0.8182 D 2
positions_6nt_m1 positions_7nt_m1 positions_6nt_m1 positions_7nt_m1 0.858 0.594 11 11 9 13 0.6923 0.8182 0.8182 D -2
positions_6nt_m2 oligos_7nt_mkv5_m4 positions_6nt_m2 oligos_7nt_mkv5_m4 0.850 0.588 11 11 9 13 0.6923 0.8182 0.8182 D 2
oligos_7nt_mkv5_m4 positions_6nt_m2 oligos_7nt_mkv5_m4 positions_6nt_m2 0.850 0.588 11 11 9 13 0.6923 0.8182 0.8182 D -2
positions_6nt_m4 oligos_7nt_mkv5_m4 positions_6nt_m4 oligos_7nt_mkv5_m4 0.764 0.573 10 11 9 12 0.7500 0.9000 0.8182 R -2
oligos_7nt_mkv5_m4 positions_6nt_m4 oligos_7nt_mkv5_m4 positions_6nt_m4 0.764 0.573 11 10 9 12 0.7500 0.8182 0.9000 R -1
oligos_7nt_mkv5_m4 positions_7nt_m2 oligos_7nt_mkv5_m4 positions_7nt_m2 0.884 0.505 11 11 8 14 0.5714 0.7273 0.7273 D -3
positions_7nt_m2 oligos_7nt_mkv5_m4 positions_7nt_m2 oligos_7nt_mkv5_m4 0.884 0.505 11 11 8 14 0.5714 0.7273 0.7273 D 3
oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m5 0.744 0.458 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m2 oligos_6nt_mkv4_m5 oligos_6nt_mkv4_m2 0.744 0.458 10 11 8 13 0.6154 0.8000 0.7273 R 2
positions_6nt_m2 oligos_7nt_mkv5_m5 positions_6nt_m2 oligos_7nt_mkv5_m5 0.752 0.401 11 12 8 15 0.5333 0.7273 0.6667 R -4
oligos_7nt_mkv5_m5 positions_6nt_m2 oligos_7nt_mkv5_m5 positions_6nt_m2 0.752 0.401 12 11 8 15 0.5333 0.6667 0.7273 R -3 
 Host name	rsat
 Job started	2026-01-10.172533
 Job done	2026-01-10.172554
 Seconds	2.81
	user	2.82
	system	0.91
	cuser	15.78
;	csystem	1.87