compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file2 $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files match_table_html $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_disco_compa.html html_index $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab prefix $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_disco_compa alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html Matrices file1 17 matrices $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 13 5267 file1 2 11 5272 file1 3 10 2242 file1 4 13 2486 file1 5 10 2238 file1 6 11 4900 file1 7 11 7445 file1 8 10 2202 file1 9 10 1854 file1 10 10 2369 file1 11 16 3750 ... 7 more matrices file2 17 matrices $RSAT/public_html/tmp/www-data/2026/01/10/peak-motifs.2026-01-10.173413_2026-01-10.173413_ct8LJt/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 13 5267 file2 2 11 5272 file2 3 10 2242 file2 4 13 2486 file2 5 10 2238 file2 6 11 4900 file2 7 11 7445 file2 8 10 2202 file2 9 10 1854 file2 10 10 2369 file2 11 16 3750 ... 7 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m5 | positions_6nt_m5 | positions_6nt_m5 | positions_6nt_m5 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m2 | positions_7nt_m2 | positions_7nt_m2 | positions_7nt_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m2 | 0.825 | 0.825 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m3 | 0.825 | 0.825 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| positions_6nt_m1 | oligos_6nt_mkv4_m1 | positions_6nt_m1 | oligos_6nt_mkv4_m1 | 0.960 | 0.812 | 11 | 13 | 11 | 13 | 0.8462 | 1.0000 | 0.8462 | D | -1 |
| oligos_6nt_mkv4_m1 | positions_6nt_m1 | oligos_6nt_mkv4_m1 | positions_6nt_m1 | 0.960 | 0.812 | 13 | 11 | 11 | 13 | 0.8462 | 0.8462 | 1.0000 | D | 1 |
| oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m1 | 0.970 | 0.788 | 16 | 13 | 13 | 16 | 0.8125 | 0.8125 | 1.0000 | D | 2 |
| oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m1 | 0.970 | 0.788 | 13 | 16 | 13 | 16 | 0.8125 | 1.0000 | 0.8125 | D | -2 |
| positions_7nt_m2 | positions_6nt_m2 | positions_7nt_m2 | positions_6nt_m2 | 0.905 | 0.755 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | D | 1 |
| positions_6nt_m2 | positions_7nt_m2 | positions_6nt_m2 | positions_7nt_m2 | 0.905 | 0.755 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | D | -1 |
| oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m5 | 0.822 | 0.754 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | R | 0 |
| oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m4 | 0.822 | 0.754 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | R | 1 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m5 | 0.703 | 0.703 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m3 | 0.703 | 0.703 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m4 | positions_6nt_m2 | positions_6nt_m4 | positions_6nt_m2 | 0.761 | 0.692 | 10 | 11 | 10 | 11 | 0.9091 | 1.0000 | 0.9091 | R | 0 |
| positions_6nt_m2 | positions_6nt_m4 | positions_6nt_m2 | positions_6nt_m4 | 0.761 | 0.692 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | R | 1 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m4 | 0.728 | 0.667 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | R | 1 |
| oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m3 | 0.728 | 0.667 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | R | 0 |
| oligos_7nt_mkv5_m4 | positions_6nt_m5 | oligos_7nt_mkv5_m4 | positions_6nt_m5 | 0.729 | 0.663 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | D | 0 |
| positions_6nt_m5 | oligos_7nt_mkv5_m4 | positions_6nt_m5 | oligos_7nt_mkv5_m4 | 0.729 | 0.663 | 10 | 11 | 10 | 11 | 0.9091 | 1.0000 | 0.9091 | D | 0 |
| positions_7nt_m1 | positions_6nt_m3 | positions_7nt_m1 | positions_6nt_m3 | 0.727 | 0.661 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | D | 0 |
| positions_6nt_m3 | positions_7nt_m1 | positions_6nt_m3 | positions_7nt_m1 | 0.727 | 0.661 | 10 | 11 | 10 | 11 | 0.9091 | 1.0000 | 0.9091 | D | 0 |
| oligos_7nt_mkv5_m3 | positions_7nt_m2 | oligos_7nt_mkv5_m3 | positions_7nt_m2 | 0.710 | 0.651 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | R | 1 |
| positions_7nt_m2 | oligos_7nt_mkv5_m3 | positions_7nt_m2 | oligos_7nt_mkv5_m3 | 0.710 | 0.651 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | R | 0 |
| oligos_7nt_mkv5_m1 | positions_6nt_m1 | oligos_7nt_mkv5_m1 | positions_6nt_m1 | 0.942 | 0.647 | 16 | 11 | 11 | 16 | 0.6875 | 0.6875 | 1.0000 | D | 3 |
| positions_6nt_m1 | oligos_7nt_mkv5_m1 | positions_6nt_m1 | oligos_7nt_mkv5_m1 | 0.942 | 0.647 | 11 | 16 | 11 | 16 | 0.6875 | 1.0000 | 0.6875 | D | -3 |
| oligos_6nt_mkv4_m1 | positions_7nt_m1 | oligos_6nt_mkv4_m1 | positions_7nt_m1 | 0.871 | 0.622 | 13 | 11 | 10 | 14 | 0.7143 | 0.7692 | 0.9091 | D | -1 |
| positions_7nt_m1 | oligos_6nt_mkv4_m1 | positions_7nt_m1 | oligos_6nt_mkv4_m1 | 0.871 | 0.622 | 11 | 13 | 10 | 14 | 0.7143 | 0.9091 | 0.7692 | D | 1 |
| oligos_6nt_mkv4_m2 | positions_7nt_m2 | oligos_6nt_mkv4_m2 | positions_7nt_m2 | 0.742 | 0.618 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | R | -1 |
| positions_7nt_m2 | oligos_6nt_mkv4_m2 | positions_7nt_m2 | oligos_6nt_mkv4_m2 | 0.742 | 0.618 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | R | -1 |
| oligos_6nt_mkv4_m4 | positions_7nt_m2 | oligos_6nt_mkv4_m4 | positions_7nt_m2 | 0.714 | 0.604 | 13 | 11 | 11 | 13 | 0.8462 | 0.8462 | 1.0000 | R | 0 |
| positions_7nt_m2 | oligos_6nt_mkv4_m4 | positions_7nt_m2 | oligos_6nt_mkv4_m4 | 0.714 | 0.604 | 11 | 13 | 11 | 13 | 0.8462 | 1.0000 | 0.8462 | R | -2 |
| positions_7nt_m1 | oligos_7nt_mkv5_m1 | positions_7nt_m1 | oligos_7nt_mkv5_m1 | 0.870 | 0.598 | 11 | 16 | 11 | 16 | 0.6875 | 1.0000 | 0.6875 | D | -1 |
| oligos_7nt_mkv5_m1 | positions_7nt_m1 | oligos_7nt_mkv5_m1 | positions_7nt_m1 | 0.870 | 0.598 | 16 | 11 | 11 | 16 | 0.6875 | 0.6875 | 1.0000 | D | 1 |
| oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m5 | oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m5 | 0.713 | 0.594 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m5 | oligos_7nt_mkv5_m3 | oligos_6nt_mkv4_m5 | oligos_7nt_mkv5_m3 | 0.713 | 0.594 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | D | 0 |
| positions_7nt_m1 | positions_6nt_m1 | positions_7nt_m1 | positions_6nt_m1 | 0.858 | 0.594 | 11 | 11 | 9 | 13 | 0.6923 | 0.8182 | 0.8182 | D | 2 |
| positions_6nt_m1 | positions_7nt_m1 | positions_6nt_m1 | positions_7nt_m1 | 0.858 | 0.594 | 11 | 11 | 9 | 13 | 0.6923 | 0.8182 | 0.8182 | D | -2 |
| positions_6nt_m2 | oligos_7nt_mkv5_m4 | positions_6nt_m2 | oligos_7nt_mkv5_m4 | 0.850 | 0.588 | 11 | 11 | 9 | 13 | 0.6923 | 0.8182 | 0.8182 | D | 2 |
| oligos_7nt_mkv5_m4 | positions_6nt_m2 | oligos_7nt_mkv5_m4 | positions_6nt_m2 | 0.850 | 0.588 | 11 | 11 | 9 | 13 | 0.6923 | 0.8182 | 0.8182 | D | -2 |
| oligos_7nt_mkv5_m4 | positions_6nt_m4 | oligos_7nt_mkv5_m4 | positions_6nt_m4 | 0.764 | 0.573 | 11 | 10 | 9 | 12 | 0.7500 | 0.8182 | 0.9000 | R | -1 |
| positions_6nt_m4 | oligos_7nt_mkv5_m4 | positions_6nt_m4 | oligos_7nt_mkv5_m4 | 0.764 | 0.573 | 10 | 11 | 9 | 12 | 0.7500 | 0.9000 | 0.8182 | R | -2 |
| positions_7nt_m2 | oligos_7nt_mkv5_m4 | positions_7nt_m2 | oligos_7nt_mkv5_m4 | 0.884 | 0.505 | 11 | 11 | 8 | 14 | 0.5714 | 0.7273 | 0.7273 | D | 3 |
| oligos_7nt_mkv5_m4 | positions_7nt_m2 | oligos_7nt_mkv5_m4 | positions_7nt_m2 | 0.884 | 0.505 | 11 | 11 | 8 | 14 | 0.5714 | 0.7273 | 0.7273 | D | -3 |
| oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m5 | 0.744 | 0.458 | 11 | 10 | 8 | 13 | 0.6154 | 0.7273 | 0.8000 | R | 3 |
| oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m2 | 0.744 | 0.458 | 10 | 11 | 8 | 13 | 0.6154 | 0.8000 | 0.7273 | R | 2 |
| oligos_7nt_mkv5_m5 | positions_6nt_m2 | oligos_7nt_mkv5_m5 | positions_6nt_m2 | 0.752 | 0.401 | 12 | 11 | 8 | 15 | 0.5333 | 0.6667 | 0.7273 | R | -3 |
| positions_6nt_m2 | oligos_7nt_mkv5_m5 | positions_6nt_m2 | oligos_7nt_mkv5_m5 | 0.752 | 0.401 | 11 | 12 | 8 | 15 | 0.5333 | 0.7273 | 0.6667 | R | -4 |
Host name rsat Job started 2026-01-10.173613 Job done 2026-01-10.173635 Seconds 2.96 user 2.96 system 0.87 cuser 16.18 ; csystem 1.99