peak-motifs ZBTB_prom_tous_avec

Sequence composition (test sequences)

Nb of peaks: 6906
Total seq. size: 2106 kb
Min length: 145 bp
Mean length: 304.886 bp
Max length: 1000 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Sequence composition (ctrl sequences)

Nb of peaks: 740
Total seq. size: 191 kb
Min length: 137 bp
Mean length: 258.33 bp
Max length: 1000 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=350.00; evalue=0

wwTmATWAAAAwAAAAAAwmAwww

WWWTKWTTTTTTWTTTTWATKAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1531 (22.17%)
Max nb of predicted sites per peak: 76
(chr1:222639007-222639964)
Mean nb of predicted sites per peak: 6.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=350.00; evalue=0

wwAwwAAAAAAAAAAAAWAAAAaa

TTTTTTWTTTTTTTTTTTTWWTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 932 (13.50%)
Max nb of predicted sites per peak: 76
(chr1:222639007-222639964)
Mean nb of predicted sites per peak: 10.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=350.00; evalue=0

ttTTTTwTTTTTTyTTTwwTkAww

WWTMAWWAAARAAAAAAWAAAAAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1235 (17.88%)
Max nb of predicted sites per peak: 74
(chr1:222639007-222639964)
Mean nb of predicted sites per peak: 8.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=350.00; evalue=0

wwAAWtWAmAAAAAAwAAAAwmww

WWKWTTTTWTTTTTTKTWAWTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1518 (21.98%)
Max nb of predicted sites per peak: 88
(chr1:222639007-222639964)
Mean nb of predicted sites per peak: 6.83

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=350.00; evalue=0

wwTmATTAAAAAArWAAAWwAAww

WWTTWWTTTWYTTTTTTAATKAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1599 (23.15%)
Max nb of predicted sites per peak: 72
(chr1:222639007-222639964)
Mean nb of predicted sites per peak: 5.48

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_test_vs_ctrl_m1

k-mer sig=279.23; evalue=5.9e-280

ccAGGACCTGgv

BCCAGGTCCTGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1015 (14.70%)
Max nb of predicted sites per peak: 13
(chr19:16144032-16144680)
Mean nb of predicted sites per peak: 1.65

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m2

k-mer sig=259.13; evalue=7.4e-260

wwyTTwTTTTTTTAAAAAAAwAww

WWTWTTTTTTTAAAAAAAWAARWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1077 (15.60%)
Max nb of predicted sites per peak: 74
(chr1:222639007-222639964)
Mean nb of predicted sites per peak: 6.58

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m3

k-mer sig=182.77; evalue=1.7e-183

wwAAAATcATgww

WWCATGATTTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 782 (11.32%)
Max nb of predicted sites per peak: 6
(chr3:168867249-168867674)
Mean nb of predicted sites per peak: 1.34

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m4

k-mer sig=180.88; evalue=1.3e-181

wwAAAAGTAAaw

WTTTACTTTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1253 (18.14%)
Max nb of predicted sites per peak: 9
(chr15:69758219-69758386)
Mean nb of predicted sites per peak: 1.68

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m5

k-mer sig=162.62; evalue=2.4e-163

wwGTTACAAAww

WWTTTGTAACWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 619 (8.96%)
Max nb of predicted sites per peak: 4
(chr9:70842697-70843557)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Predicted sites on test peaks (all motifs)

[tab]
[bed]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31.
Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nat Protoc 7(8): 1551-1568.

RSAT - peak-motifs result

Analysis: ZBTB_prom_tous_avec_ctrl (10/01/2026 17:45)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results