One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.111536_2026-01-11.111536_IpNTs3/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.111536_2026-01-11.111536_IpNTs3/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m1_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1) |
 |
|
|
; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; mbCCCTTCAww
; Alignment reference
a 1 0 0 0 0 0 0 0 3 1 1
c 2 1 3 3 3 0 0 3 0 0 0
g 0 1 0 0 0 0 0 0 0 0 0
t 0 1 0 0 0 3 3 0 0 2 2
|
| oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1) |
|
|
|
; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m1; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; mbCCCTTCAww
; cor=; Ncor=
a 1 0 0 0 0 0 0 0 3 1 1
c 2 1 3 3 3 0 0 3 0 0 0
g 0 1 0 0 0 0 0 0 0 0 0
t 0 1 0 0 0 3 3 0 0 2 2
|
| oligos_6nt_mkv1_m1_shift0 (oligos_6nt_mkv1_m1) |
 |
|
|
; oligos_7nt_mkv1_m1 versus oligos_6nt_mkv1_m1; m=2/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; mbCCCTTCAww
; cor=; Ncor=
a 1 0 0 0 0 0 0 0 3 1 1
c 2 1 3 3 3 0 0 3 0 0 0
g 0 1 0 0 0 0 0 0 0 0 0
t 0 1 0 0 0 3 3 0 0 2 2
|
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m1_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv1_m1_shift0 (oligos_6nt_mkv1_m1) |
|
|
|
; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; mbCCCTTCAww
; Alignment reference
a 1 0 0 0 0 0 0 0 3 1 1
c 2 1 3 3 3 0 0 3 0 0 0
g 0 1 0 0 0 0 0 0 0 0 0
t 0 1 0 0 0 3 3 0 0 2 2
|
| oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1) |
|
|
|
; oligos_6nt_mkv1_m1 versus oligos_7nt_mkv1_m1; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; mbCCCTTCAww
; cor=; Ncor=
a 1 0 0 0 0 0 0 0 3 1 1
c 2 1 3 3 3 0 0 3 0 0 0
g 0 1 0 0 0 0 0 0 0 0 0
t 0 1 0 0 0 3 3 0 0 2 2
|
| oligos_6nt_mkv1_m1_shift0 (oligos_6nt_mkv1_m1) |
|
|
|
; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m1; m=2/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; mbCCCTTCAww
; cor=; Ncor=
a 1 0 0 0 0 0 0 0 3 1 1
c 2 1 3 3 3 0 0 3 0 0 0
g 0 1 0 0 0 0 0 0 0 0 0
t 0 1 0 0 0 3 3 0 0 2 2
|