; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.111536_2026-01-11.111536_IpNTs3/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.111536_2026-01-11.111536_IpNTs3/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.111536_2026-01-11.111536_IpNTs3/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.111536_2026-01-11.111536_IpNTs3/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.111536_2026-01-11.111536_IpNTs3/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	1	0	0	0	0	0	0	0	3	1	1
c	2	1	3	3	3	0	0	3	0	0	0
g	0	1	0	0	0	0	0	0	0	0	0
t	0	1	0	0	0	3	3	0	0	2	2
//
; Sites	3
>site_0
CCCCCTTCATT
>site_1
CGCCCTTCAAA
>site_2
ATCCCTTCATT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.111536_2026-01-11.111536_IpNTs3/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.111536_2026-01-11.111536_IpNTs3/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
; Host name	rsat
; Job started	2026-01-11.111543
; Job done	2026-01-11.111543
; Seconds	0.09
;	user	0.09
;	system	0.03
;	cuser	0.18
;	csystem	0.06
