position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title ZBTB_prom_tous_ctrl_plus_f -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 740 Sum of sequence lengths 191164 Min sequence length 0 Max sequence length 1000 Average sequence length 258 Possible positions 191164 Oligonucleotide statistics: Total occurrences 178026 Position interval parameters: Position interval 20 Number of windows 50 Total positions 191164 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 2 21 2 -24 [-479,-460] -469.5 6 68 3 -23 [-459,-440] -449.5 6 120 4 -22 [-439,-420] -429.5 8 129 5 -21 [-419,-400] -409.5 9 165 6 -20 [-399,-380] -389.5 12 216 7 -19 [-379,-360] -369.5 13 259 8 -18 [-359,-340] -349.5 15 289 9 -17 [-339,-320] -329.5 19 339 10 -16 [-319,-300] -309.5 25 432 11 -15 [-299,-280] -289.5 30 542 12 -14 [-279,-260] -269.5 38 669 13 -13 [-259,-240] -249.5 52 933 14 -12 [-239,-220] -229.5 65 1200 15 -11 [-219,-200] -209.5 86 1510 16 -10 [-199,-180] -189.5 114 2000 17 -9 [-179,-160] -169.5 158 2764 18 -8 [-159,-140] -149.5 212 3723 19 -7 [-139,-120] -129.5 303 5084 20 -6 [-119,-100] -109.5 417 7236 21 -5 [-99,-80] -89.5 579 9939 22 -4 [-79,-60] -69.5 740 13900 23 -3 [-59,-40] -49.5 740 14800 24 -2 [-39,-20] -29.5 740 14800 25 -1 [-19,0] -9.5 740 14800 26 0 [1,20] 10.5 740 14800 27 1 [21,40] 30.5 740 14800 28 2 [41,60] 50.5 740 14800 29 3 [61,80] 70.5 740 13753 30 4 [81,100] 90.5 569 9789 31 5 [101,120] 110.5 409 7127 32 6 [121,140] 130.5 293 4990 33 7 [141,160] 150.5 207 3667 34 8 [161,180] 170.5 156 2727 35 9 [181,200] 190.5 113 1973 36 10 [201,220] 210.5 85 1486 37 11 [221,240] 230.5 62 1187 38 12 [241,260] 250.5 52 919 39 13 [261,280] 270.5 38 661 40 14 [281,300] 290.5 30 538 41 15 [301,320] 310.5 24 426 42 16 [321,340] 330.5 17 332 43 17 [341,360] 350.5 15 286 44 18 [361,380] 370.5 13 258 45 19 [381,400] 390.5 12 211 46 20 [401,420] 410.5 9 164 47 21 [421,440] 430.5 8 128 48 22 [441,460] 450.5 6 120 49 23 [461,480] 470.5 6 64 50 24 [481,500] 490.5 1 20 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 56363 | 290.4 | 49 | 5.2e-36 | 2.1e-35 | 34.68 | 1 | 0 | 20 | 15 | 34 | 38 | 48 | 59 | 73 | 78 | 113 | 128 | 171 | 274 | 354 | 426 | 600 | 748 | 1031 | 1457 | 2159 | 3132 | 4251 | 4547 | 4466 | 4419 | 4576 | 4488 | 4637 | 4081 | 2858 | 1992 | 1349 | 988 | 707 | 440 | 384 | 298 | 226 | 147 | 110 | 87 | 69 | 58 | 68 | 50 | 27 | 38 | 34 | 10 | 0 |
| c | c | 56729 | 192.2 | 49 | 7.6e-19 | 3e-18 | 17.52 | 2 | 0 | 10 | 44 | 33 | 39 | 41 | 67 | 75 | 87 | 122 | 148 | 191 | 240 | 308 | 379 | 542 | 778 | 1068 | 1428 | 2041 | 2873 | 4267 | 4590 | 4574 | 4506 | 4341 | 4498 | 4435 | 4379 | 2971 | 2139 | 1449 | 1061 | 710 | 565 | 396 | 289 | 252 | 191 | 124 | 107 | 78 | 64 | 58 | 52 | 45 | 29 | 31 | 14 | 0 |
| a | a | 32298 | 100.2 | 49 | 2.2e-05 | 9e-05 | 4.05 | 3 | 0 | 5 | 18 | 17 | 18 | 23 | 26 | 32 | 53 | 75 | 103 | 117 | 165 | 215 | 302 | 345 | 480 | 633 | 933 | 1353 | 1754 | 2421 | 2507 | 2415 | 2511 | 2480 | 2375 | 2393 | 2268 | 1602 | 1164 | 899 | 681 | 465 | 326 | 262 | 212 | 137 | 98 | 88 | 72 | 53 | 43 | 49 | 32 | 29 | 19 | 20 | 10 | 0 |
| t | t | 32636 | 60.2 | 49 | 1.3e-01 | 0.52 | 0.28 | 4 | 1 | 13 | 23 | 21 | 18 | 28 | 38 | 49 | 61 | 62 | 103 | 117 | 169 | 210 | 267 | 331 | 498 | 654 | 895 | 1256 | 1610 | 2380 | 2439 | 2525 | 2473 | 2482 | 2535 | 2487 | 2257 | 1742 | 1298 | 905 | 614 | 520 | 370 | 263 | 219 | 164 | 102 | 96 | 73 | 62 | 61 | 42 | 37 | 23 | 18 | 15 | 10 | 0 |
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