position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title ZBTB_prom_tous_ctrl_plus_f -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 6906 Sum of sequence lengths 2105541 Min sequence length 0 Max sequence length 1000 Average sequence length 304 Possible positions 2105541 Oligonucleotide statistics: Total occurrences 1999785 Position interval parameters: Position interval 20 Number of windows 50 Total positions 2105541 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 167 3160 2 -24 [-479,-460] -469.5 193 3574 3 -23 [-459,-440] -449.5 220 4122 4 -22 [-439,-420] -429.5 253 4738 5 -21 [-419,-400] -409.5 279 5384 6 -20 [-399,-380] -389.5 313 5931 7 -19 [-379,-360] -369.5 365 6707 8 -18 [-359,-340] -349.5 417 7805 9 -17 [-339,-320] -329.5 492 9127 10 -16 [-319,-300] -309.5 579 10754 11 -15 [-299,-280] -289.5 692 12701 12 -14 [-279,-260] -269.5 812 15152 13 -13 [-259,-240] -249.5 985 18070 14 -12 [-239,-220] -229.5 1175 21759 15 -11 [-219,-200] -209.5 1408 25994 16 -10 [-199,-180] -189.5 1729 31487 17 -9 [-179,-160] -169.5 2158 38758 18 -8 [-159,-140] -149.5 2677 48398 19 -7 [-139,-120] -129.5 3260 59553 20 -6 [-119,-100] -109.5 4164 74030 21 -5 [-99,-80] -89.5 5897 99942 22 -4 [-79,-60] -69.5 6906 134652 23 -3 [-59,-40] -49.5 6906 138120 24 -2 [-39,-20] -29.5 6906 138120 25 -1 [-19,0] -9.5 6906 138120 26 0 [1,20] 10.5 6906 138120 27 1 [21,40] 30.5 6906 138120 28 2 [41,60] 50.5 6906 138120 29 3 [61,80] 70.5 6906 133652 30 4 [81,100] 90.5 5785 98153 31 5 [101,120] 110.5 4099 73126 32 6 [121,140] 130.5 3222 58980 33 7 [141,160] 150.5 2650 47894 34 8 [161,180] 170.5 2134 38303 35 9 [181,200] 190.5 1706 31166 36 10 [201,220] 210.5 1398 25772 37 11 [221,240] 230.5 1168 21576 38 12 [241,260] 250.5 978 17906 39 13 [261,280] 270.5 808 15038 40 14 [281,300] 290.5 678 12585 41 15 [301,320] 310.5 573 10670 42 16 [321,340] 330.5 488 9053 43 17 [341,360] 350.5 414 7756 44 18 [361,380] 370.5 361 6653 45 19 [381,400] 390.5 311 5895 46 20 [401,420] 410.5 277 5356 47 21 [421,440] 430.5 251 4704 48 22 [441,460] 450.5 219 4098 49 23 [461,480] 470.5 190 3550 50 24 [481,500] 490.5 167 3137 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 562863 | 406.6 | 49 | 0.0e+00 | 0 | 300 | 1 | 755 | 833 | 972 | 1115 | 1286 | 1473 | 1602 | 2008 | 2331 | 2742 | 3092 | 4110 | 4813 | 5705 | 6895 | 8660 | 10342 | 13117 | 15980 | 20646 | 28038 | 37250 | 37222 | 36967 | 36669 | 36791 | 36701 | 36766 | 35511 | 26409 | 19506 | 15790 | 12910 | 10194 | 8154 | 6926 | 5580 | 4529 | 3819 | 3268 | 2796 | 2298 | 1988 | 1644 | 1488 | 1356 | 1144 | 1021 | 887 | 764 |
| c | c | 563428 | 361.2 | 49 | 3.6e-49 | 1.5e-48 | 47.84 | 2 | 842 | 915 | 1093 | 1156 | 1386 | 1496 | 1706 | 1920 | 2361 | 2670 | 3284 | 3834 | 4668 | 5700 | 6671 | 8104 | 10300 | 12683 | 15967 | 19632 | 26774 | 35587 | 36842 | 36894 | 36790 | 36670 | 36985 | 37596 | 37279 | 27591 | 20147 | 16063 | 13025 | 10425 | 8500 | 6798 | 5679 | 4771 | 4002 | 3301 | 2736 | 2300 | 1945 | 1683 | 1458 | 1279 | 1168 | 1034 | 916 | 802 |
| a | a | 437908 | 307.3 | 49 | 4.2e-39 | 1.7e-38 | 37.77 | 3 | 748 | 924 | 946 | 1131 | 1196 | 1281 | 1547 | 1766 | 2061 | 2438 | 2850 | 3285 | 3877 | 4590 | 5613 | 6712 | 8175 | 10205 | 12389 | 15222 | 20367 | 27976 | 28651 | 28661 | 28909 | 29145 | 28954 | 28386 | 27033 | 19622 | 14675 | 12130 | 9866 | 7868 | 6497 | 5415 | 4467 | 3747 | 3150 | 2599 | 2265 | 1886 | 1566 | 1412 | 1268 | 1145 | 1018 | 868 | 713 | 693 |
| t | t | 435586 | 225.5 | 49 | 1.8e-24 | 7.4e-24 | 23.13 | 4 | 744 | 775 | 891 | 1048 | 1188 | 1332 | 1513 | 1677 | 1920 | 2294 | 2704 | 3138 | 3765 | 4635 | 5474 | 6372 | 7965 | 10019 | 12365 | 14981 | 19858 | 27084 | 28177 | 28581 | 28974 | 28657 | 28597 | 28402 | 27394 | 19809 | 15341 | 12391 | 9928 | 7996 | 6571 | 5417 | 4731 | 3933 | 3253 | 2682 | 2220 | 1964 | 1699 | 1438 | 1250 | 1170 | 967 | 824 | 764 | 714 |
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