/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	24	506
		file1	2	24	2226
		file1	3	24	1051
		file1	4	24	689
		file1	5	24	587
		file1	6	12	5353
		file1	7	24	747
		file1	8	13	2366
		file1	9	12	3043
		file1	10	12	1479
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		24		506
		file2		2		24		2226
		file2		3		24		1051
		file2		4		24		689
		file2		5		24		587
		file2		6		12		5353
		file2		7		24		747
		file2		8		13		2366
		file2		9		12		3043
		file2		10		12		1479
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 0.881 0.881 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.881 0.881 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 0.874 0.874 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 0.874 0.874 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 0.811 0.811 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 0.811 0.811 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m3 0.781 0.781 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 0.781 0.781 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m3 0.753 0.753 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m4 0.753 0.753 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 0.748 0.748 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 0.748 0.748 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.701 0.701 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.701 0.701 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 0.819 0.693 24 24 22 26 0.8462 0.9167 0.9167 D -2
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 0.819 0.693 24 24 22 26 0.8462 0.9167 0.9167 D 2
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 0.782 0.661 24 24 22 26 0.8462 0.9167 0.9167 D -2
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 0.782 0.661 24 24 22 26 0.8462 0.9167 0.9167 D 2
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 0.766 0.547 24 24 20 28 0.7143 0.8333 0.8333 D 4
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m2 0.766 0.547 24 24 20 28 0.7143 0.8333 0.8333 D -4
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.722 0.516 24 24 20 28 0.7143 0.8333 0.8333 D 4
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 0.722 0.516 24 24 20 28 0.7143 0.8333 0.8333 D -4
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.713 0.509 24 24 20 28 0.7143 0.8333 0.8333 R 4
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 0.713 0.509 24 24 20 28 0.7143 0.8333 0.8333 R 4
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 0.852 0.426 12 24 12 24 0.5000 1.0000 0.5000 D -7
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m4 0.852 0.426 24 12 12 24 0.5000 0.5000 1.0000 D 7 
 Host name	rsat
 Job started	2026-01-11.121140
 Job done	2026-01-11.121150
 Seconds	0.97
	user	0.97
	system	0.44
	cuser	7.84
;	csystem	1