One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.121022_2026-01-11.121022_KHnYUP/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift0 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; ttTTTTwTTTTTTyTTTwwtgadw ; Alignment reference a 223 162 92 52 48 60 373 55 64 73 56 58 74 101 74 69 96 485 521 224 177 676 272 381 c 166 158 62 54 46 53 62 39 32 36 24 34 57 325 44 40 52 86 72 54 105 101 212 148 g 130 157 46 49 36 33 79 29 32 27 29 31 37 64 25 71 56 88 148 109 540 105 294 239 t 532 574 851 896 921 905 537 928 923 915 942 928 883 561 908 871 847 392 310 664 229 169 273 283

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/6; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; ttTTTTwTTTTTTyTTTwwtgadw ; cor=; Ncor= a 223 162 92 52 48 60 373 55 64 73 56 58 74 101 74 69 96 485 521 224 177 676 272 381 c 166 158 62 54 46 53 62 39 32 36 24 34 57 325 44 40 52 86 72 54 105 101 212 148 g 130 157 46 49 36 33 79 29 32 27 29 31 37 64 25 71 56 88 148 109 540 105 294 239 t 532 574 851 896 921 905 537 928 923 915 942 928 883 561 908 871 847 392 310 664 229 169 273 283

oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2_rc; m=2/6; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.880819; ttTTTTtTTTTTtTTTTTTwwttt ; cor=; Ncor= a 335 312 162 97 99 102 512 91 75 66 80 88 163 106 100 73 77 93 162 730 792 358 522 542 c 350 346 192 118 112 103 185 84 73 51 66 64 485 81 71 52 73 61 81 124 158 137 280 336 g 297 253 103 78 82 76 139 61 53 49 57 65 136 48 65 57 58 78 130 226 261 319 415 427 t 1244 1315 1769 1933 1933 1945 1390 1990 2025 2060 2023 2009 1442 1991 1990 2044 2018 1994 1853 1146 1015 1412 1009 921

oligos_6nt_test_vs_ctrl_m1_rc_shift0 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/6; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.811144; wwwTkwTTTTwTTTTTTaATgaww ; cor=; Ncor= a 135 153 245 65 94 289 63 41 41 44 286 34 33 36 40 36 60 331 349 89 90 308 160 162 c 90 85 68 37 48 40 27 28 25 35 34 19 19 27 22 24 33 31 34 31 52 61 72 91 g 98 76 57 47 199 28 23 36 31 21 31 18 32 21 21 25 25 33 32 40 239 34 122 98 t 183 192 136 357 165 149 393 401 409 406 155 435 422 422 423 421 388 111 91 346 125 103 152 155

oligos_6nt_test_vs_ctrl_m5_rc_shift0 (oligos_6nt_test_vs_ctrl_m5_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=4/6; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.781014; wwTTawTTTayTTTTTTAATgaww ; cor=; Ncor= a 168 167 71 85 330 354 73 61 62 354 77 57 45 86 48 48 60 430 417 99 104 371 194 177 c 105 103 56 42 72 53 34 35 51 50 233 36 36 29 31 31 37 36 42 35 74 51 111 107 g 92 89 50 42 41 32 38 36 34 41 46 25 32 31 29 27 32 30 43 45 271 46 107 108 t 222 228 410 418 144 148 442 455 440 142 231 469 474 441 479 481 458 91 85 408 138 119 175 195

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/6; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.752618; wtkwTTTTwTTTTTTkTaaatttw ; cor=; Ncor= a 187 167 128 377 64 62 37 47 385 51 62 59 50 64 93 84 88 432 381 428 100 136 169 176 c 115 101 89 56 41 28 35 32 51 29 25 25 24 36 18 56 50 50 55 54 52 40 139 118 g 131 125 266 53 29 27 76 39 52 28 38 25 22 32 38 304 46 51 103 54 101 71 129 165 t 256 296 206 203 555 572 541 571 201 581 564 580 593 557 540 245 505 156 150 153 436 442 252 230

oligos_7nt_test_vs_ctrl_m2_rc_shift4 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2_rc; m=6/6; ncol2=24; w=0; offset=4; strand=R; shift=4; score=0.509099; ----twytTwTTTTTTTAAAAAAA ; cor=; Ncor= a 0 0 0 0 182 224 155 128 97 406 81 85 72 95 71 79 130 555 584 567 565 586 551 568 c 0 0 0 0 122 134 266 57 65 73 48 43 43 54 58 31 28 33 36 41 52 41 54 45 g 0 0 0 0 133 123 73 58 76 53 49 45 41 36 36 31 34 37 34 63 53 44 49 43 t 0 0 0 0 310 266 253 504 509 215 569 574 591 562 582 606 555 122 93 76 77 76 93 91

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift2 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift2 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=2; ncol=26; --aaawwAAAAAAaAAAAAaAAAAaa ; Alignment reference a 0 0 921 1009 1412 1015 1146 1853 1994 2018 2044 1990 1991 1442 2009 2023 2060 2025 1990 1390 1945 1933 1933 1769 1315 1244 c 0 0 427 415 319 261 226 130 78 58 57 65 48 136 65 57 49 53 61 139 76 82 78 103 253 297 g 0 0 336 280 137 158 124 81 61 73 52 71 81 485 64 66 51 73 84 185 103 112 118 192 346 350 t 0 0 542 522 358 792 730 162 93 77 73 100 106 163 88 80 66 75 91 512 102 99 97 162 312 335

oligos_6nt_test_vs_ctrl_m2_shift2 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/5; ncol2=24; w=0; offset=0; strand=D; shift=2; score= 1; --aaawwAAAAAAaAAAAAaAAAAaa ; cor=; Ncor= a 0 0 921 1009 1412 1015 1146 1853 1994 2018 2044 1990 1991 1442 2009 2023 2060 2025 1990 1390 1945 1933 1933 1769 1315 1244 c 0 0 427 415 319 261 226 130 78 58 57 65 48 136 65 57 49 53 61 139 76 82 78 103 253 297 g 0 0 336 280 137 158 124 81 61 73 52 71 81 485 64 66 51 73 84 185 103 112 118 192 346 350 t 0 0 542 522 358 792 730 162 93 77 73 100 106 163 88 80 66 75 91 512 102 99 97 162 312 335

oligos_6nt_test_vs_ctrl_m3_rc_shift2 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/5; ncol2=24; w=0; offset=0; strand=R; shift=2; score=0.880819; --whtcawwAAArAAAAAAwAAAAaa ; cor=; Ncor= a 0 0 283 273 169 229 664 310 392 847 871 908 561 883 928 942 915 923 928 537 905 921 896 851 574 532 c 0 0 239 294 105 540 109 148 88 56 71 25 64 37 31 29 27 32 29 79 33 36 49 46 157 130 g 0 0 148 212 101 105 54 72 86 52 40 44 325 57 34 24 36 32 39 62 53 46 54 62 158 166 t 0 0 381 272 676 177 224 521 485 96 69 74 101 74 58 56 73 64 55 373 60 48 52 92 162 223

oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=3/5; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.748092; --waaatttAmAAAAAAwAAAAwmaw ; cor=; Ncor= a 0 0 230 252 442 436 153 150 156 505 245 540 557 593 580 564 581 201 571 541 572 555 203 206 296 256 c 0 0 165 129 71 101 54 103 51 46 304 38 32 22 25 38 28 52 39 76 27 29 53 266 125 131 g 0 0 118 139 40 52 54 55 50 50 56 18 36 24 25 25 29 51 32 35 28 41 56 89 101 115 t 0 0 176 169 136 100 428 381 432 88 84 93 64 50 59 62 51 385 47 37 62 64 377 128 167 187

oligos_6nt_test_vs_ctrl_m1_shift2 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/5; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.701442; --wwtcATtAAAAAAwAAAAwmAwww ; cor=; Ncor= a 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 357 136 192 183 c 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 47 57 76 98 g 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 37 68 85 90 t 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94 65 245 153 135

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=5/5; ncol2=24; w=-2; offset=-2; strand=D; shift=0; score=0.661355; wwtcATTAAAAAArtAAAwtAAww-- ; cor=; Ncor= a 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 144 418 410 228 222 0 0 c 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 41 42 50 89 92 0 0 g 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 72 42 56 103 105 0 0 t 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354 330 85 71 167 168 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=24; shift=0; ncol=24; waaatttAmAAAAAAwAAAAwmaw ; Alignment reference a 230 252 442 436 153 150 156 505 245 540 557 593 580 564 581 201 571 541 572 555 203 206 296 256 c 165 129 71 101 54 103 51 46 304 38 32 22 25 38 28 52 39 76 27 29 53 266 125 131 g 118 139 40 52 54 55 50 50 56 18 36 24 25 25 29 51 32 35 28 41 56 89 101 115 t 176 169 136 100 428 381 432 88 84 93 64 50 59 62 51 385 47 37 62 64 377 128 167 187

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; waaatttAmAAAAAAwAAAAwmaw ; cor=; Ncor= a 230 252 442 436 153 150 156 505 245 540 557 593 580 564 581 201 571 541 572 555 203 206 296 256 c 165 129 71 101 54 103 51 46 304 38 32 22 25 38 28 52 39 76 27 29 53 266 125 131 g 118 139 40 52 54 55 50 50 56 18 36 24 25 25 29 51 32 35 28 41 56 89 101 115 t 176 169 136 100 428 381 432 88 84 93 64 50 59 62 51 385 47 37 62 64 377 128 167 187

oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/4; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.752618; whtcawwAAArAAAAAAwAAAAaa ; cor=; Ncor= a 283 273 169 229 664 310 392 847 871 908 561 883 928 942 915 923 928 537 905 921 896 851 574 532 c 239 294 105 540 109 148 88 56 71 25 64 37 31 29 27 32 29 79 33 36 49 46 157 130 g 148 212 101 105 54 72 86 52 40 44 325 57 34 24 36 32 39 62 53 46 54 62 158 166 t 381 272 676 177 224 521 485 96 69 74 101 74 58 56 73 64 55 373 60 48 52 92 162 223

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=3/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.748092; aaawwAAAAAAaAAAAAaAAAAaa ; cor=; Ncor= a 921 1009 1412 1015 1146 1853 1994 2018 2044 1990 1991 1442 2009 2023 2060 2025 1990 1390 1945 1933 1933 1769 1315 1244 c 427 415 319 261 226 130 78 58 57 65 48 136 65 57 49 53 61 139 76 82 78 103 253 297 g 336 280 137 158 124 81 61 73 52 71 81 485 64 66 51 73 84 185 103 112 118 192 346 350 t 542 522 358 792 730 162 93 77 73 100 106 163 88 80 66 75 91 512 102 99 97 162 312 335

oligos_6nt_test_vs_ctrl_m1_shift2 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=4/4; ncol2=24; w=0; offset=2; strand=D; shift=2; score=0.692794; --wwtcATtAAAAAAwAAAAwmAw ; cor=; Ncor= a 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 357 136 c 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 47 57 g 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 37 68 t 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94 65 245

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift4 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift4 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=24; shift=4; ncol=28; ----wwtcATTAAAAAArtAAAwtAAww ; Alignment reference a 0 0 0 0 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 144 418 410 228 222 c 0 0 0 0 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 41 42 50 89 92 g 0 0 0 0 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 72 42 56 103 105 t 0 0 0 0 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354 330 85 71 167 168

oligos_6nt_test_vs_ctrl_m5_shift4 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/6; ncol2=24; w=0; offset=0; strand=D; shift=4; score= 1; ----wwtcATTAAAAAArtAAAwtAAww ; cor=; Ncor= a 0 0 0 0 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 144 418 410 228 222 c 0 0 0 0 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 41 42 50 89 92 g 0 0 0 0 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 72 42 56 103 105 t 0 0 0 0 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354 330 85 71 167 168

oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=2/6; ncol2=24; w=0; offset=0; strand=D; shift=4; score=0.873843; ----wwtcATtAAAAAAwAAAAwmAwww ; cor=; Ncor= a 0 0 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 357 136 192 183 c 0 0 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 47 57 76 98 g 0 0 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 37 68 85 90 t 0 0 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94 65 245 153 135

oligos_6nt_test_vs_ctrl_m3_rc_shift4 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=3/6; ncol2=24; w=0; offset=0; strand=R; shift=4; score=0.781014; ----whtcawwAAArAAAAAAwAAAAaa ; cor=; Ncor= a 0 0 0 0 283 273 169 229 664 310 392 847 871 908 561 883 928 942 915 923 928 537 905 921 896 851 574 532 c 0 0 0 0 239 294 105 540 109 148 88 56 71 25 64 37 31 29 27 32 29 79 33 36 49 46 157 130 g 0 0 0 0 148 212 101 105 54 72 86 52 40 44 325 57 34 24 36 32 39 62 53 46 54 62 158 166 t 0 0 0 0 381 272 676 177 224 521 485 96 69 74 101 74 58 56 73 64 55 373 60 48 52 92 162 223

oligos_6nt_test_vs_ctrl_m2_shift6 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=4/6; ncol2=24; w=0; offset=2; strand=D; shift=6; score=0.661355; ------aaawwAAAAAAaAAAAAaAAAA ; cor=; Ncor= a 0 0 0 0 0 0 921 1009 1412 1015 1146 1853 1994 2018 2044 1990 1991 1442 2009 2023 2060 2025 1990 1390 1945 1933 1933 1769 c 0 0 0 0 0 0 427 415 319 261 226 130 78 58 57 65 48 136 65 57 49 53 61 139 76 82 78 103 g 0 0 0 0 0 0 336 280 137 158 124 81 61 73 52 71 81 485 64 66 51 73 84 185 103 112 118 192 t 0 0 0 0 0 0 542 522 358 792 730 162 93 77 73 100 106 163 88 80 66 75 91 512 102 99 97 162

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=5/6; ncol2=24; w=-4; offset=-4; strand=D; shift=0; score=0.547224; wwtwTTTTTTTAAAAAAAwAarwa---- ; cor=; Ncor= a 250 226 131 407 91 93 76 77 76 93 122 555 606 582 562 591 574 569 215 509 504 253 266 310 0 0 0 0 c 105 123 65 75 43 49 44 53 63 34 37 34 31 36 36 41 45 49 53 76 58 73 123 133 0 0 0 0 g 104 119 64 64 45 54 41 52 41 36 33 28 31 58 54 43 43 48 73 65 57 266 134 122 0 0 0 0 t 288 279 487 201 568 551 586 565 567 584 555 130 79 71 95 72 85 81 406 97 128 155 224 182 0 0 0 0

oligos_7nt_test_vs_ctrl_m4_shift11 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=6/6; ncol2=12; w=0; offset=7; strand=D; shift=11; score=0.426174; -----------arAAAAGTAAaw----- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1109 1098 2822 2812 2750 2722 381 487 2787 2612 1315 1147 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 459 489 58 58 74 70 107 167 79 128 475 473 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 733 764 76 58 71 101 2390 264 96 114 644 650 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 742 692 87 115 148 150 165 2125 81 189 609 773 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; awGTTACAAAra ; Alignment reference a 488 456 98 68 51 1286 129 1361 1253 1202 482 474 c 304 226 53 52 77 56 1206 38 62 100 241 302 g 341 334 1189 46 60 56 57 30 50 57 408 337 t 346 463 139 1313 1291 81 87 50 114 120 348 366

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; awGTTACAAAra ; cor=; Ncor= a 488 456 98 68 51 1286 129 1361 1253 1202 482 474 c 304 226 53 52 77 56 1206 38 62 100 241 302 g 341 334 1189 46 60 56 57 30 50 57 408 337 t 346 463 139 1313 1291 81 87 50 114 120 348 366

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift7 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift7 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=12; shift=7; ncol=19; -------arAAAAGTAAaw ; Alignment reference a 0 0 0 0 0 0 0 1109 1098 2822 2812 2750 2722 381 487 2787 2612 1315 1147 c 0 0 0 0 0 0 0 459 489 58 58 74 70 107 167 79 128 475 473 g 0 0 0 0 0 0 0 733 764 76 58 71 101 2390 264 96 114 644 650 t 0 0 0 0 0 0 0 742 692 87 115 148 150 165 2125 81 189 609 773

oligos_7nt_test_vs_ctrl_m4_shift7 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/2; ncol2=12; w=0; offset=0; strand=D; shift=7; score= 1; -------arAAAAGTAAaw ; cor=; Ncor= a 0 0 0 0 0 0 0 1109 1098 2822 2812 2750 2722 381 487 2787 2612 1315 1147 c 0 0 0 0 0 0 0 459 489 58 58 74 70 107 167 79 128 475 473 g 0 0 0 0 0 0 0 733 764 76 58 71 101 2390 264 96 114 644 650 t 0 0 0 0 0 0 0 742 692 87 115 148 150 165 2125 81 189 609 773

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=2/2; ncol2=24; w=-7; offset=-7; strand=D; shift=0; score=0.426174; wwtcATTAAAAAArtAAAw ; cor=; Ncor= a 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 c 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 g 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 t 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift4 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=4; ncol=28; ----wwtcATtAAAAAAwAAAAwmAwww ; Alignment reference a 0 0 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 357 136 192 183 c 0 0 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 47 57 76 98 g 0 0 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 37 68 85 90 t 0 0 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94 65 245 153 135

oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/6; ncol2=24; w=0; offset=0; strand=D; shift=4; score= 1; ----wwtcATtAAAAAAwAAAAwmAwww ; cor=; Ncor= a 0 0 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 357 136 192 183 c 0 0 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 47 57 76 98 g 0 0 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 37 68 85 90 t 0 0 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94 65 245 153 135

oligos_6nt_test_vs_ctrl_m5_shift4 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=2/6; ncol2=24; w=0; offset=0; strand=D; shift=4; score=0.873843; ----wwtcATTAAAAAArtAAAwtAAww ; cor=; Ncor= a 0 0 0 0 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 144 418 410 228 222 c 0 0 0 0 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 41 42 50 89 92 g 0 0 0 0 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 72 42 56 103 105 t 0 0 0 0 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354 330 85 71 167 168

oligos_6nt_test_vs_ctrl_m3_rc_shift4 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=3/6; ncol2=24; w=0; offset=0; strand=R; shift=4; score=0.811144; ----whtcawwAAArAAAAAAwAAAAaa ; cor=; Ncor= a 0 0 0 0 283 273 169 229 664 310 392 847 871 908 561 883 928 942 915 923 928 537 905 921 896 851 574 532 c 0 0 0 0 239 294 105 540 109 148 88 56 71 25 64 37 31 29 27 32 29 79 33 36 49 46 157 130 g 0 0 0 0 148 212 101 105 54 72 86 52 40 44 325 57 34 24 36 32 39 62 53 46 54 62 158 166 t 0 0 0 0 381 272 676 177 224 521 485 96 69 74 101 74 58 56 73 64 55 373 60 48 52 92 162 223

oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=4/6; ncol2=24; w=0; offset=0; strand=D; shift=4; score=0.701442; ----aaawwAAAAAAaAAAAAaAAAAaa ; cor=; Ncor= a 0 0 0 0 921 1009 1412 1015 1146 1853 1994 2018 2044 1990 1991 1442 2009 2023 2060 2025 1990 1390 1945 1933 1933 1769 1315 1244 c 0 0 0 0 427 415 319 261 226 130 78 58 57 65 48 136 65 57 49 53 61 139 76 82 78 103 253 297 g 0 0 0 0 336 280 137 158 124 81 61 73 52 71 81 485 64 66 51 73 84 185 103 112 118 192 346 350 t 0 0 0 0 542 522 358 792 730 162 93 77 73 100 106 163 88 80 66 75 91 512 102 99 97 162 312 335

oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=5/6; ncol2=24; w=-2; offset=-2; strand=D; shift=2; score=0.692794; --waaatttAmAAAAAAwAAAAwmaw-- ; cor=; Ncor= a 0 0 230 252 442 436 153 150 156 505 245 540 557 593 580 564 581 201 571 541 572 555 203 206 296 256 0 0 c 0 0 165 129 71 101 54 103 51 46 304 38 32 22 25 38 28 52 39 76 27 29 53 266 125 131 0 0 g 0 0 118 139 40 52 54 55 50 50 56 18 36 24 25 25 29 51 32 35 28 41 56 89 101 115 0 0 t 0 0 176 169 136 100 428 381 432 88 84 93 64 50 59 62 51 385 47 37 62 64 377 128 167 187 0 0

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=6/6; ncol2=24; w=-4; offset=-4; strand=D; shift=0; score=0.515652; wwtwTTTTTTTAAAAAAAwAarwa---- ; cor=; Ncor= a 250 226 131 407 91 93 76 77 76 93 122 555 606 582 562 591 574 569 215 509 504 253 266 310 0 0 0 0 c 105 123 65 75 43 49 44 53 63 34 37 34 31 36 36 41 45 49 53 76 58 73 123 133 0 0 0 0 g 104 119 64 64 45 54 41 52 41 36 33 28 31 58 54 43 43 48 73 65 57 266 134 122 0 0 0 0 t 288 279 487 201 568 551 586 565 567 584 555 130 79 71 95 72 85 81 406 97 128 155 224 182 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; wwtwTTTTTTTAAAAAAAwAarwa ; Alignment reference a 250 226 131 407 91 93 76 77 76 93 122 555 606 582 562 591 574 569 215 509 504 253 266 310 c 105 123 65 75 43 49 44 53 63 34 37 34 31 36 36 41 45 49 53 76 58 73 123 133 g 104 119 64 64 45 54 41 52 41 36 33 28 31 58 54 43 43 48 73 65 57 266 134 122 t 288 279 487 201 568 551 586 565 567 584 555 130 79 71 95 72 85 81 406 97 128 155 224 182

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; wwtwTTTTTTTAAAAAAAwAarwa ; cor=; Ncor= a 250 226 131 407 91 93 76 77 76 93 122 555 606 582 562 591 574 569 215 509 504 253 266 310 c 105 123 65 75 43 49 44 53 63 34 37 34 31 36 36 41 45 49 53 76 58 73 123 133 g 104 119 64 64 45 54 41 52 41 36 33 28 31 58 54 43 43 48 73 65 57 266 134 122 t 288 279 487 201 568 551 586 565 567 584 555 130 79 71 95 72 85 81 406 97 128 155 224 182

oligos_6nt_test_vs_ctrl_m5_shift4 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=2/4; ncol2=24; w=0; offset=4; strand=D; shift=4; score=0.547224; ----wwtcATTAAAAAArtAAAwt ; cor=; Ncor= a 0 0 0 0 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 144 c 0 0 0 0 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 41 g 0 0 0 0 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 72 t 0 0 0 0 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354 330

oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=3/4; ncol2=24; w=0; offset=4; strand=D; shift=4; score=0.515652; ----wwtcATtAAAAAAwAAAAwm ; cor=; Ncor= a 0 0 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 c 0 0 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 g 0 0 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 t 0 0 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94

oligos_6nt_test_vs_ctrl_m3_rc_shift4 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=4/4; ncol2=24; w=0; offset=4; strand=R; shift=4; score=0.509099; ----whtcawwAAArAAAAAAwAA ; cor=; Ncor= a 0 0 0 0 283 273 169 229 664 310 392 847 871 908 561 883 928 942 915 923 928 537 905 921 c 0 0 0 0 239 294 105 540 109 148 88 56 71 25 64 37 31 29 27 32 29 79 33 36 g 0 0 0 0 148 212 101 105 54 72 86 52 40 44 325 57 34 24 36 32 39 62 53 46 t 0 0 0 0 381 272 676 177 224 521 485 96 69 74 101 74 58 56 73 64 55 373 60 48

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; scAGGACCTGss ; Alignment reference a 962 1052 4849 141 87 3987 137 79 145 201 1000 1309 c 1895 2431 98 57 122 270 4779 5041 246 299 1354 1580 g 1490 1174 288 5088 5067 308 309 100 103 4465 2170 1529 t 1006 696 118 67 77 788 128 133 4859 388 829 935

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; scAGGACCTGss ; cor=; Ncor= a 962 1052 4849 141 87 3987 137 79 145 201 1000 1309 c 1895 2431 98 57 122 270 4779 5041 246 299 1354 1580 g 1490 1174 288 5088 5067 308 309 100 103 4465 2170 1529 t 1006 696 118 67 77 788 128 133 4859 388 829 935

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; wwAAAATCATgww ; Alignment reference a 715 700 1771 2013 2044 2023 163 294 2098 99 318 648 684 c 397 506 154 92 111 100 107 1683 114 140 259 500 555 g 548 513 226 105 98 117 86 194 86 90 1366 472 454 t 706 647 215 156 113 126 2010 195 68 2037 423 746 673

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/1; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; wwAAAATCATgww ; cor=; Ncor= a 715 700 1771 2013 2044 2023 163 294 2098 99 318 648 684 c 397 506 154 92 111 100 107 1683 114 140 259 500 555 g 548 513 226 105 98 117 86 194 86 90 1366 472 454 t 706 647 215 156 113 126 2010 195 68 2037 423 746 673

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; ttTTTTwTTTTTTyTTTwwtgadw ; Alignment reference a 223 162 92 52 48 60 373 55 64 73 56 58 74 101 74 69 96 485 521 224 177 676 272 381 c 166 158 62 54 46 53 62 39 32 36 24 34 57 325 44 40 52 86 72 54 105 101 212 148 g 130 157 46 49 36 33 79 29 32 27 29 31 37 64 25 71 56 88 148 109 540 105 294 239 t 532 574 851 896 921 905 537 928 923 915 942 928 883 561 908 871 847 392 310 664 229 169 273 283
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/6; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; ttTTTTwTTTTTTyTTTwwtgadw ; cor=; Ncor= a 223 162 92 52 48 60 373 55 64 73 56 58 74 101 74 69 96 485 521 224 177 676 272 381 c 166 158 62 54 46 53 62 39 32 36 24 34 57 325 44 40 52 86 72 54 105 101 212 148 g 130 157 46 49 36 33 79 29 32 27 29 31 37 64 25 71 56 88 148 109 540 105 294 239 t 532 574 851 896 921 905 537 928 923 915 942 928 883 561 908 871 847 392 310 664 229 169 273 283
oligos_6nt_test_vs_ctrl_m2_rc_shift0 (oligos_6nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2_rc; m=2/6; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.880819; ttTTTTtTTTTTtTTTTTTwwttt ; cor=; Ncor= a 335 312 162 97 99 102 512 91 75 66 80 88 163 106 100 73 77 93 162 730 792 358 522 542 c 350 346 192 118 112 103 185 84 73 51 66 64 485 81 71 52 73 61 81 124 158 137 280 336 g 297 253 103 78 82 76 139 61 53 49 57 65 136 48 65 57 58 78 130 226 261 319 415 427 t 1244 1315 1769 1933 1933 1945 1390 1990 2025 2060 2023 2009 1442 1991 1990 2044 2018 1994 1853 1146 1015 1412 1009 921
oligos_6nt_test_vs_ctrl_m1_rc_shift0 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1_rc; m=3/6; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.811144; wwwTkwTTTTwTTTTTTaATgaww ; cor=; Ncor= a 135 153 245 65 94 289 63 41 41 44 286 34 33 36 40 36 60 331 349 89 90 308 160 162 c 90 85 68 37 48 40 27 28 25 35 34 19 19 27 22 24 33 31 34 31 52 61 72 91 g 98 76 57 47 199 28 23 36 31 21 31 18 32 21 21 25 25 33 32 40 239 34 122 98 t 183 192 136 357 165 149 393 401 409 406 155 435 422 422 423 421 388 111 91 346 125 103 152 155
oligos_6nt_test_vs_ctrl_m5_rc_shift0 (oligos_6nt_test_vs_ctrl_m5_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5_rc; m=4/6; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.781014; wwTTawTTTayTTTTTTAATgaww ; cor=; Ncor= a 168 167 71 85 330 354 73 61 62 354 77 57 45 86 48 48 60 430 417 99 104 371 194 177 c 105 103 56 42 72 53 34 35 51 50 233 36 36 29 31 31 37 36 42 35 74 51 111 107 g 92 89 50 42 41 32 38 36 34 41 46 25 32 31 29 27 32 30 43 45 271 46 107 108 t 222 228 410 418 144 148 442 455 440 142 231 469 474 441 479 481 458 91 85 408 138 119 175 195
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4_rc; m=5/6; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.752618; wtkwTTTTwTTTTTTkTaaatttw ; cor=; Ncor= a 187 167 128 377 64 62 37 47 385 51 62 59 50 64 93 84 88 432 381 428 100 136 169 176 c 115 101 89 56 41 28 35 32 51 29 25 25 24 36 18 56 50 50 55 54 52 40 139 118 g 131 125 266 53 29 27 76 39 52 28 38 25 22 32 38 304 46 51 103 54 101 71 129 165 t 256 296 206 203 555 572 541 571 201 581 564 580 593 557 540 245 505 156 150 153 436 442 252 230
oligos_7nt_test_vs_ctrl_m2_rc_shift4 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2_rc; m=6/6; ncol2=24; w=0; offset=4; strand=R; shift=4; score=0.509099; ----twytTwTTTTTTTAAAAAAA ; cor=; Ncor= a 0 0 0 0 182 224 155 128 97 406 81 85 72 95 71 79 130 555 584 567 565 586 551 568 c 0 0 0 0 122 134 266 57 65 73 48 43 43 54 58 31 28 33 36 41 52 41 54 45 g 0 0 0 0 133 123 73 58 76 53 49 45 41 36 36 31 34 37 34 63 53 44 49 43 t 0 0 0 0 310 266 253 504 509 215 569 574 591 562 582 606 555 122 93 76 77 76 93 91

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift2 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=2; ncol=26; --aaawwAAAAAAaAAAAAaAAAAaa ; Alignment reference a 0 0 921 1009 1412 1015 1146 1853 1994 2018 2044 1990 1991 1442 2009 2023 2060 2025 1990 1390 1945 1933 1933 1769 1315 1244 c 0 0 427 415 319 261 226 130 78 58 57 65 48 136 65 57 49 53 61 139 76 82 78 103 253 297 g 0 0 336 280 137 158 124 81 61 73 52 71 81 485 64 66 51 73 84 185 103 112 118 192 346 350 t 0 0 542 522 358 792 730 162 93 77 73 100 106 163 88 80 66 75 91 512 102 99 97 162 312 335
oligos_6nt_test_vs_ctrl_m2_shift2 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/5; ncol2=24; w=0; offset=0; strand=D; shift=2; score= 1; --aaawwAAAAAAaAAAAAaAAAAaa ; cor=; Ncor= a 0 0 921 1009 1412 1015 1146 1853 1994 2018 2044 1990 1991 1442 2009 2023 2060 2025 1990 1390 1945 1933 1933 1769 1315 1244 c 0 0 427 415 319 261 226 130 78 58 57 65 48 136 65 57 49 53 61 139 76 82 78 103 253 297 g 0 0 336 280 137 158 124 81 61 73 52 71 81 485 64 66 51 73 84 185 103 112 118 192 346 350 t 0 0 542 522 358 792 730 162 93 77 73 100 106 163 88 80 66 75 91 512 102 99 97 162 312 335
oligos_6nt_test_vs_ctrl_m3_rc_shift2 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/5; ncol2=24; w=0; offset=0; strand=R; shift=2; score=0.880819; --whtcawwAAArAAAAAAwAAAAaa ; cor=; Ncor= a 0 0 283 273 169 229 664 310 392 847 871 908 561 883 928 942 915 923 928 537 905 921 896 851 574 532 c 0 0 239 294 105 540 109 148 88 56 71 25 64 37 31 29 27 32 29 79 33 36 49 46 157 130 g 0 0 148 212 101 105 54 72 86 52 40 44 325 57 34 24 36 32 39 62 53 46 54 62 158 166 t 0 0 381 272 676 177 224 521 485 96 69 74 101 74 58 56 73 64 55 373 60 48 52 92 162 223
oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=3/5; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.748092; --waaatttAmAAAAAAwAAAAwmaw ; cor=; Ncor= a 0 0 230 252 442 436 153 150 156 505 245 540 557 593 580 564 581 201 571 541 572 555 203 206 296 256 c 0 0 165 129 71 101 54 103 51 46 304 38 32 22 25 38 28 52 39 76 27 29 53 266 125 131 g 0 0 118 139 40 52 54 55 50 50 56 18 36 24 25 25 29 51 32 35 28 41 56 89 101 115 t 0 0 176 169 136 100 428 381 432 88 84 93 64 50 59 62 51 385 47 37 62 64 377 128 167 187
oligos_6nt_test_vs_ctrl_m1_shift2 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/5; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.701442; --wwtcATtAAAAAAwAAAAwmAwww ; cor=; Ncor= a 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 357 136 192 183 c 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 47 57 76 98 g 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 37 68 85 90 t 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94 65 245 153 135
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=5/5; ncol2=24; w=-2; offset=-2; strand=D; shift=0; score=0.661355; wwtcATTAAAAAArtAAAwtAAww-- ; cor=; Ncor= a 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 144 418 410 228 222 0 0 c 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 41 42 50 89 92 0 0 g 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 72 42 56 103 105 0 0 t 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354 330 85 71 167 168 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=24; shift=0; ncol=24; waaatttAmAAAAAAwAAAAwmaw ; Alignment reference a 230 252 442 436 153 150 156 505 245 540 557 593 580 564 581 201 571 541 572 555 203 206 296 256 c 165 129 71 101 54 103 51 46 304 38 32 22 25 38 28 52 39 76 27 29 53 266 125 131 g 118 139 40 52 54 55 50 50 56 18 36 24 25 25 29 51 32 35 28 41 56 89 101 115 t 176 169 136 100 428 381 432 88 84 93 64 50 59 62 51 385 47 37 62 64 377 128 167 187
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; waaatttAmAAAAAAwAAAAwmaw ; cor=; Ncor= a 230 252 442 436 153 150 156 505 245 540 557 593 580 564 581 201 571 541 572 555 203 206 296 256 c 165 129 71 101 54 103 51 46 304 38 32 22 25 38 28 52 39 76 27 29 53 266 125 131 g 118 139 40 52 54 55 50 50 56 18 36 24 25 25 29 51 32 35 28 41 56 89 101 115 t 176 169 136 100 428 381 432 88 84 93 64 50 59 62 51 385 47 37 62 64 377 128 167 187
oligos_6nt_test_vs_ctrl_m3_rc_shift0 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/4; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.752618; whtcawwAAArAAAAAAwAAAAaa ; cor=; Ncor= a 283 273 169 229 664 310 392 847 871 908 561 883 928 942 915 923 928 537 905 921 896 851 574 532 c 239 294 105 540 109 148 88 56 71 25 64 37 31 29 27 32 29 79 33 36 49 46 157 130 g 148 212 101 105 54 72 86 52 40 44 325 57 34 24 36 32 39 62 53 46 54 62 158 166 t 381 272 676 177 224 521 485 96 69 74 101 74 58 56 73 64 55 373 60 48 52 92 162 223
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=3/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.748092; aaawwAAAAAAaAAAAAaAAAAaa ; cor=; Ncor= a 921 1009 1412 1015 1146 1853 1994 2018 2044 1990 1991 1442 2009 2023 2060 2025 1990 1390 1945 1933 1933 1769 1315 1244 c 427 415 319 261 226 130 78 58 57 65 48 136 65 57 49 53 61 139 76 82 78 103 253 297 g 336 280 137 158 124 81 61 73 52 71 81 485 64 66 51 73 84 185 103 112 118 192 346 350 t 542 522 358 792 730 162 93 77 73 100 106 163 88 80 66 75 91 512 102 99 97 162 312 335
oligos_6nt_test_vs_ctrl_m1_shift2 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=4/4; ncol2=24; w=0; offset=2; strand=D; shift=2; score=0.692794; --wwtcATtAAAAAAwAAAAwmAw ; cor=; Ncor= a 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 357 136 c 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 47 57 g 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 37 68 t 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94 65 245

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift4 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=24; shift=4; ncol=28; ----wwtcATTAAAAAArtAAAwtAAww ; Alignment reference a 0 0 0 0 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 144 418 410 228 222 c 0 0 0 0 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 41 42 50 89 92 g 0 0 0 0 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 72 42 56 103 105 t 0 0 0 0 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354 330 85 71 167 168
oligos_6nt_test_vs_ctrl_m5_shift4 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/6; ncol2=24; w=0; offset=0; strand=D; shift=4; score= 1; ----wwtcATTAAAAAArtAAAwtAAww ; cor=; Ncor= a 0 0 0 0 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 144 418 410 228 222 c 0 0 0 0 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 41 42 50 89 92 g 0 0 0 0 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 72 42 56 103 105 t 0 0 0 0 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354 330 85 71 167 168
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=2/6; ncol2=24; w=0; offset=0; strand=D; shift=4; score=0.873843; ----wwtcATtAAAAAAwAAAAwmAwww ; cor=; Ncor= a 0 0 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 357 136 192 183 c 0 0 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 47 57 76 98 g 0 0 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 37 68 85 90 t 0 0 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94 65 245 153 135
oligos_6nt_test_vs_ctrl_m3_rc_shift4 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m3_rc; m=3/6; ncol2=24; w=0; offset=0; strand=R; shift=4; score=0.781014; ----whtcawwAAArAAAAAAwAAAAaa ; cor=; Ncor= a 0 0 0 0 283 273 169 229 664 310 392 847 871 908 561 883 928 942 915 923 928 537 905 921 896 851 574 532 c 0 0 0 0 239 294 105 540 109 148 88 56 71 25 64 37 31 29 27 32 29 79 33 36 49 46 157 130 g 0 0 0 0 148 212 101 105 54 72 86 52 40 44 325 57 34 24 36 32 39 62 53 46 54 62 158 166 t 0 0 0 0 381 272 676 177 224 521 485 96 69 74 101 74 58 56 73 64 55 373 60 48 52 92 162 223
oligos_6nt_test_vs_ctrl_m2_shift6 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=4/6; ncol2=24; w=0; offset=2; strand=D; shift=6; score=0.661355; ------aaawwAAAAAAaAAAAAaAAAA ; cor=; Ncor= a 0 0 0 0 0 0 921 1009 1412 1015 1146 1853 1994 2018 2044 1990 1991 1442 2009 2023 2060 2025 1990 1390 1945 1933 1933 1769 c 0 0 0 0 0 0 427 415 319 261 226 130 78 58 57 65 48 136 65 57 49 53 61 139 76 82 78 103 g 0 0 0 0 0 0 336 280 137 158 124 81 61 73 52 71 81 485 64 66 51 73 84 185 103 112 118 192 t 0 0 0 0 0 0 542 522 358 792 730 162 93 77 73 100 106 163 88 80 66 75 91 512 102 99 97 162
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=5/6; ncol2=24; w=-4; offset=-4; strand=D; shift=0; score=0.547224; wwtwTTTTTTTAAAAAAAwAarwa---- ; cor=; Ncor= a 250 226 131 407 91 93 76 77 76 93 122 555 606 582 562 591 574 569 215 509 504 253 266 310 0 0 0 0 c 105 123 65 75 43 49 44 53 63 34 37 34 31 36 36 41 45 49 53 76 58 73 123 133 0 0 0 0 g 104 119 64 64 45 54 41 52 41 36 33 28 31 58 54 43 43 48 73 65 57 266 134 122 0 0 0 0 t 288 279 487 201 568 551 586 565 567 584 555 130 79 71 95 72 85 81 406 97 128 155 224 182 0 0 0 0
oligos_7nt_test_vs_ctrl_m4_shift11 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=6/6; ncol2=12; w=0; offset=7; strand=D; shift=11; score=0.426174; -----------arAAAAGTAAaw----- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1109 1098 2822 2812 2750 2722 381 487 2787 2612 1315 1147 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 459 489 58 58 74 70 107 167 79 128 475 473 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 733 764 76 58 71 101 2390 264 96 114 644 650 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 742 692 87 115 148 150 165 2125 81 189 609 773 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=4; ncol=28; ----wwtcATtAAAAAAwAAAAwmAwww ; Alignment reference a 0 0 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 357 136 192 183 c 0 0 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 47 57 76 98 g 0 0 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 37 68 85 90 t 0 0 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94 65 245 153 135
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/6; ncol2=24; w=0; offset=0; strand=D; shift=4; score= 1; ----wwtcATtAAAAAAwAAAAwmAwww ; cor=; Ncor= a 0 0 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 357 136 192 183 c 0 0 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 47 57 76 98 g 0 0 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 37 68 85 90 t 0 0 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94 65 245 153 135
oligos_6nt_test_vs_ctrl_m5_shift4 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=2/6; ncol2=24; w=0; offset=0; strand=D; shift=4; score=0.873843; ----wwtcATTAAAAAArtAAAwtAAww ; cor=; Ncor= a 0 0 0 0 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 144 418 410 228 222 c 0 0 0 0 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 41 42 50 89 92 g 0 0 0 0 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 72 42 56 103 105 t 0 0 0 0 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354 330 85 71 167 168
oligos_6nt_test_vs_ctrl_m3_rc_shift4 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=3/6; ncol2=24; w=0; offset=0; strand=R; shift=4; score=0.811144; ----whtcawwAAArAAAAAAwAAAAaa ; cor=; Ncor= a 0 0 0 0 283 273 169 229 664 310 392 847 871 908 561 883 928 942 915 923 928 537 905 921 896 851 574 532 c 0 0 0 0 239 294 105 540 109 148 88 56 71 25 64 37 31 29 27 32 29 79 33 36 49 46 157 130 g 0 0 0 0 148 212 101 105 54 72 86 52 40 44 325 57 34 24 36 32 39 62 53 46 54 62 158 166 t 0 0 0 0 381 272 676 177 224 521 485 96 69 74 101 74 58 56 73 64 55 373 60 48 52 92 162 223
oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=4/6; ncol2=24; w=0; offset=0; strand=D; shift=4; score=0.701442; ----aaawwAAAAAAaAAAAAaAAAAaa ; cor=; Ncor= a 0 0 0 0 921 1009 1412 1015 1146 1853 1994 2018 2044 1990 1991 1442 2009 2023 2060 2025 1990 1390 1945 1933 1933 1769 1315 1244 c 0 0 0 0 427 415 319 261 226 130 78 58 57 65 48 136 65 57 49 53 61 139 76 82 78 103 253 297 g 0 0 0 0 336 280 137 158 124 81 61 73 52 71 81 485 64 66 51 73 84 185 103 112 118 192 346 350 t 0 0 0 0 542 522 358 792 730 162 93 77 73 100 106 163 88 80 66 75 91 512 102 99 97 162 312 335
oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=5/6; ncol2=24; w=-2; offset=-2; strand=D; shift=2; score=0.692794; --waaatttAmAAAAAAwAAAAwmaw-- ; cor=; Ncor= a 0 0 230 252 442 436 153 150 156 505 245 540 557 593 580 564 581 201 571 541 572 555 203 206 296 256 0 0 c 0 0 165 129 71 101 54 103 51 46 304 38 32 22 25 38 28 52 39 76 27 29 53 266 125 131 0 0 g 0 0 118 139 40 52 54 55 50 50 56 18 36 24 25 25 29 51 32 35 28 41 56 89 101 115 0 0 t 0 0 176 169 136 100 428 381 432 88 84 93 64 50 59 62 51 385 47 37 62 64 377 128 167 187 0 0
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=6/6; ncol2=24; w=-4; offset=-4; strand=D; shift=0; score=0.515652; wwtwTTTTTTTAAAAAAAwAarwa---- ; cor=; Ncor= a 250 226 131 407 91 93 76 77 76 93 122 555 606 582 562 591 574 569 215 509 504 253 266 310 0 0 0 0 c 105 123 65 75 43 49 44 53 63 34 37 34 31 36 36 41 45 49 53 76 58 73 123 133 0 0 0 0 g 104 119 64 64 45 54 41 52 41 36 33 28 31 58 54 43 43 48 73 65 57 266 134 122 0 0 0 0 t 288 279 487 201 568 551 586 565 567 584 555 130 79 71 95 72 85 81 406 97 128 155 224 182 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; wwtwTTTTTTTAAAAAAAwAarwa ; Alignment reference a 250 226 131 407 91 93 76 77 76 93 122 555 606 582 562 591 574 569 215 509 504 253 266 310 c 105 123 65 75 43 49 44 53 63 34 37 34 31 36 36 41 45 49 53 76 58 73 123 133 g 104 119 64 64 45 54 41 52 41 36 33 28 31 58 54 43 43 48 73 65 57 266 134 122 t 288 279 487 201 568 551 586 565 567 584 555 130 79 71 95 72 85 81 406 97 128 155 224 182
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; wwtwTTTTTTTAAAAAAAwAarwa ; cor=; Ncor= a 250 226 131 407 91 93 76 77 76 93 122 555 606 582 562 591 574 569 215 509 504 253 266 310 c 105 123 65 75 43 49 44 53 63 34 37 34 31 36 36 41 45 49 53 76 58 73 123 133 g 104 119 64 64 45 54 41 52 41 36 33 28 31 58 54 43 43 48 73 65 57 266 134 122 t 288 279 487 201 568 551 586 565 567 584 555 130 79 71 95 72 85 81 406 97 128 155 224 182
oligos_6nt_test_vs_ctrl_m5_shift4 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=2/4; ncol2=24; w=0; offset=4; strand=D; shift=4; score=0.547224; ----wwtcATTAAAAAArtAAAwt ; cor=; Ncor= a 0 0 0 0 195 175 119 138 408 85 91 458 481 479 441 474 469 231 142 440 455 442 148 144 c 0 0 0 0 108 107 46 271 45 43 30 32 27 29 31 32 25 46 41 34 36 38 32 41 g 0 0 0 0 107 111 51 74 35 42 36 37 31 31 29 36 36 233 50 51 35 34 53 72 t 0 0 0 0 177 194 371 104 99 417 430 60 48 48 86 45 57 77 354 62 61 73 354 330
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=3/4; ncol2=24; w=0; offset=4; strand=D; shift=4; score=0.515652; ----wwtcATtAAAAAAwAAAAwm ; cor=; Ncor= a 0 0 0 0 155 152 103 125 346 91 111 388 421 423 422 422 435 155 406 409 401 393 149 165 c 0 0 0 0 98 122 34 239 40 32 33 25 25 21 21 32 18 31 21 31 36 23 28 199 g 0 0 0 0 91 72 61 52 31 34 31 33 24 22 27 19 19 34 35 25 28 27 40 48 t 0 0 0 0 162 160 308 90 89 349 331 60 36 40 36 33 34 286 44 41 41 63 289 94
oligos_6nt_test_vs_ctrl_m3_rc_shift4 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=4/4; ncol2=24; w=0; offset=4; strand=R; shift=4; score=0.509099; ----whtcawwAAArAAAAAAwAA ; cor=; Ncor= a 0 0 0 0 283 273 169 229 664 310 392 847 871 908 561 883 928 942 915 923 928 537 905 921 c 0 0 0 0 239 294 105 540 109 148 88 56 71 25 64 37 31 29 27 32 29 79 33 36 g 0 0 0 0 148 212 101 105 54 72 86 52 40 44 325 57 34 24 36 32 39 62 53 46 t 0 0 0 0 381 272 676 177 224 521 485 96 69 74 101 74 58 56 73 64 55 373 60 48