; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm.asmb
; Input score column           	9
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	19
;

; assembly # 1	seed: aggacct	9 assembled patterns	length 15
;        alignt	        rev_cpl	score
cctgcca........	........tggcagg	1.82
.ctgccag.......	.......ctggcag.	5.03
..tgccagg......	......cctggca..	4.79
...gccagga.....	.....tcctggc...	3.81
....ccaggac....	....gtcctgg....	13.21
.....caggacc...	...ggtcctg.....	14.26
......aggacct..	..aggtcct......	22.94
.......ggacctg.	.caggtcc.......	5.00
........gacctgg	ccaggtc........	0.94
cctgccaggacctgg	ccaggtcctggcagg	22.94	best consensus

; assembly # 2	seed: aggaccc	7 assembled patterns	length 13
;      alignt	      rev_cpl	score
cctgcca......	......tggcagg	1.82
.ctgccag.....	.....ctggcag.	5.03
..tgccagg....	....cctggca..	4.79
...gccagga...	...tcctggc...	3.81
....ccaggac..	..gtcctgg....	13.21
.....caggacc.	.ggtcctg.....	14.26
......aggaccc	gggtcct......	4.69
cctgccaggaccc	gggtcctggcagg	14.26	best consensus

; assembly # 3	seed: cagggcc	2 assembled patterns	length 8
; alignt	 rev_cpl	score
cagggcc.	.ggccctg	3.90
.agggcct	aggccct.	1.35
cagggcct	aggccctg	3.90	best consensus

; assembly # 4	seed: ctggaag	1 assembled patterns	length 7
;alignt	rev_cpl	score
ctggaag	cttccag	2.73
ctggaag	cttccag	2.73	best consensus

; assembly # 5	seed: aaggacc	4 assembled patterns	length 10
;   alignt	   rev_cpl	score
aaggacc...	...ggtcctt	2.46
.aggacct..	..aggtcct.	22.94
..ggacctg.	.caggtcc..	5.00
...gacctgg	ccaggtc...	0.94
aaggacctgg	ccaggtcctt	22.94	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 4.
; Host name	rsat
; Job started	2026-01-11.222303
; Job done	2026-01-11.222304
; Seconds	0.58
;	user	0.58
;	system	0.01
;	cuser	0
;	csystem	0
