; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/oligos_7nt_mkv5/peak-motifs_oligos-2str-noov_7nt_mkv5_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	100
;

; assembly # 1	seed: aggacct	6 assembled patterns	length 12
;     alignt	     rev_cpl	score
tccagga.....	.....tcctgga	15.00
.ccaggac....	....gtcctgg.	17.54
..caggacc...	...ggtcctg..	15.70
...aggacct..	..aggtcct...	52.04
....ggacctg.	.caggtcc....	19.68
.....gacctgg	ccaggtc.....	5.75
tccaggacctgg	ccaggtcctgga	52.04	best consensus

; assembly # 2	seed: attttta	1 assembled patterns	length 7
;alignt	rev_cpl	score
attttta	taaaaat	36.40
attttta	taaaaat	36.40	best consensus

; assembly # 3	seed: cgccctc	2 assembled patterns	length 8
; alignt	 rev_cpl	score
cgccctc.	.gagggcg	23.41
.gccctcg	cgagggc.	3.89
cgccctcg	cgagggcg	23.41	best consensus

; assembly # 4	seed: cgccccc	1 assembled patterns	length 7
;alignt	rev_cpl	score
cgccccc	gggggcg	21.29
cgccccc	gggggcg	21.29	best consensus

; assembly # 5	seed: cgcaggc	2 assembled patterns	length 8
; alignt	 rev_cpl	score
cgcaggc.	.gcctgcg	19.07
.gcaggcg	cgcctgc.	15.01
cgcaggcg	cgcctgcg	19.07	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 87.
; Host name	rsat
; Job started	2026-01-11.222054
; Job done	2026-01-11.222056
; Seconds	2.07
;	user	2.07
;	system	0.01
;	cuser	0
;	csystem	0
