; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm.asmb
; Input score column           	9
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	43
;

; assembly # 1	seed: aggacc	11 assembled patterns	length 16
;         alignt	         rev_cpl	score
tccagg..........	..........cctgga	4.90
.ccagga.........	.........tcctgg.	9.31
..caggac........	........gtcctg..	24.79
...aggacc.......	.......ggtcct...	37.62
....ggacct......	......aggtcc....	26.55
.....gacctg.....	.....caggtc.....	6.92
......acctgc....	....gcaggt......	1.67
.......cctgcc...	...ggcagg.......	2.33
........ctgcca..	..tggcag........	2.83
.........tgccag.	.ctggca.........	1.54
..........gccagg	cctggc..........	4.84
tccaggacctgccagg	cctggcaggtcctgga	37.62	best consensus

; assembly # 2	seed: agggcc	14 assembled patterns	length 19
;            alignt	            rev_cpl	score
agcagg.............	.............cctgct	1.57
.gcaggt............	............acctgc.	1.67
..caggtc...........	...........gacctg..	6.92
...aggtcc..........	..........ggacct...	26.55
....ggtcct.........	.........aggacc....	37.62
.....gtcctg........	........caggac.....	24.79
......tcctgg.......	.......ccagga......	9.31
.......cctggc......	......gccagg.......	4.84
........ctggca.....	.....tgccag........	1.54
.........tggcag....	....ctgcca.........	2.83
..........ggcagg...	...cctgcc..........	2.33
...........gcaggg..	..ccctgc...........	0.50
............cagggc.	.gccctg............	2.07
.............agggcc	ggccct.............	5.33
agcaggtcctggcagggcc	ggccctgccaggacctgct	37.62	best consensus

; assembly # 3	seed: ccgccc	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
ccccgc...	...gcgggg	1.03
.cccgcc..	..ggcggg.	3.02
..ccgccc.	.gggcgg..	3.08
...cgcccc	ggggcg...	0.06
ccccgcccc	ggggcgggg	3.08	best consensus

; assembly # 4	seed: cttcca	1 assembled patterns	length 6
;alignt	rev_cpl	score
cttcca	tggaag	2.69
cttcca	tggaag	2.69	best consensus

; assembly # 5	seed: gcagga	15 assembled patterns	length 20
;             alignt	             rev_cpl	score
ggtcct..............	..............aggacc	37.62
.gtcctg.............	.............caggac.	24.79
..tcctgg............	............ccagga..	9.31
...cctggc...........	...........gccagg...	4.84
....ctggca..........	..........tgccag....	1.54
.....tggcag.........	.........ctgcca.....	2.83
......ggcagg........	........cctgcc......	2.33
.......gcagga.......	.......tcctgc.......	2.38
........caggac......	......gtcctg........	24.79
.........aggacc.....	.....ggtcct.........	37.62
..........ggacct....	....aggtcc..........	26.55
...........gacctg...	...caggtc...........	6.92
............acctgc..	..gcaggt............	1.67
.............cctgcc.	.ggcagg.............	2.33
..............ctgcca	tggcag..............	2.83
ggtcctggcaggacctgcca	tggcaggtcctgccaggacc	37.62	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 21.
; Host name	rsat
; Job started	2026-01-11.222154
; Job done	2026-01-11.222155
; Seconds	1.57
;	user	1.57
;	system	0.02
;	cuser	0
;	csystem	0
