; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/oligos_6nt_mkv4/peak-motifs_oligos-2str-noov_6nt_mkv4_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	100
;

; assembly # 1	seed: aggacc	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
caggac...	...gtcctg	73.75
.aggacc..	..ggtcct.	87.66
..ggacct.	.aggtcc..	33.22
...gacctg	caggtc...	9.58
caggacctg	caggtcctg	87.66	best consensus

; assembly # 2	seed: cgcccg	1 assembled patterns	length 6
;alignt	rev_cpl	score
cgcccg	cgggcg	34.35
cgcccg	cgggcg	34.35	best consensus

; assembly # 3	seed: cggagc	1 assembled patterns	length 6
;alignt	rev_cpl	score
cggagc	gctccg	34.01
cggagc	gctccg	34.01	best consensus

; assembly # 4	seed: cgagcg	1 assembled patterns	length 6
;alignt	rev_cpl	score
cgagcg	cgctcg	33.85
cgagcg	cgctcg	33.85	best consensus

; assembly # 5	seed: cggccg	1 assembled patterns	length 6
;alignt	rev_cpl	score
cggccg	cggccg	29.29
cggccg	cggccg	29.29	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 91.
; Host name	rsat
; Job started	2026-01-11.222033
; Job done	2026-01-11.222034
; Seconds	1.49
;	user	1.49
;	system	0
;	cuser	0
;	csystem	0
