AC  assembly_1
XX
ID  cctgccaggacctgg
XX
DE  nnCCTGCCAGGACCTGgnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      1.82      0.00      0.00
4         0.00      5.03      0.00      0.00
5         0.00      0.00      0.00      5.03
6         0.00      0.00      5.03      0.00
7         0.00     13.21      0.00      0.00
8         0.00     14.26      0.00      0.00
9        22.94      0.00      0.00      0.00
10        0.00      0.00     22.94      0.00
11        0.00      0.00     22.94      0.00
12       22.94      0.00      0.00      0.00
13        0.00     22.94      0.00      0.00
14        0.00     22.94      0.00      0.00
15        0.00      0.00      0.00     22.94
16        0.00      0.00      5.00      0.00
17        0.00      0.00      0.94      0.00
18        0.00      0.00      0.00      0.00
19        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 1
CC  id: assembly_1
CC  name: cctgccaggacctgg
CC  asmb.seed: aggacct
CC  matrix.nb: 1
CC  sites: 9
CC  consensus.strict: --CCTGCCAGGACCTGg--
CC  consensus.strict.rc: --CCAGGTCCTGGCAGG--
CC  consensus.IUPAC: nnCCTGCCAGGACCTGgnn
CC  consensus.IUPAC.rc: NNCCAGGTCCTGGCAGGNN
CC  consensus.regexp: [acgt][acgt]CCTGCCAGGACCTGg[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]CCAGGTCCTGGCAGG[ACGT][ACGT]
XX
//
AC  assembly_2
XX
ID  cctgccaggaccc
XX
DE  nnCCTGCCAGGACCCnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      1.82      0.00      0.00
4         0.00      5.03      0.00      0.00
5         0.00      0.00      0.00      5.03
6         0.00      0.00      5.03      0.00
7         0.00     13.21      0.00      0.00
8         0.00     14.26      0.00      0.00
9        14.26      0.00      0.00      0.00
10        0.00      0.00     14.26      0.00
11        0.00      0.00     14.26      0.00
12       14.26      0.00      0.00      0.00
13        0.00     14.26      0.00      0.00
14        0.00     14.26      0.00      0.00
15        0.00      4.69      0.00      0.00
16        0.00      0.00      0.00      0.00
17        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 2
CC  id: assembly_2
CC  name: cctgccaggaccc
CC  asmb.seed: aggaccc
CC  matrix.nb: 2
CC  sites: 7
CC  consensus.strict: --CCTGCCAGGACCC--
CC  consensus.strict.rc: --GGGTCCTGGCAGG--
CC  consensus.IUPAC: nnCCTGCCAGGACCCnn
CC  consensus.IUPAC.rc: NNGGGTCCTGGCAGGNN
CC  consensus.regexp: [acgt][acgt]CCTGCCAGGACCC[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]GGGTCCTGGCAGG[ACGT][ACGT]
XX
//
AC  assembly_3
XX
ID  cagggcct
XX
DE  nnCAGGGCCTnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      3.90      0.00      0.00
4         3.90      0.00      0.00      0.00
5         0.00      0.00      3.90      0.00
6         0.00      0.00      3.90      0.00
7         0.00      0.00      3.90      0.00
8         0.00      3.90      0.00      0.00
9         0.00      3.90      0.00      0.00
10        0.00      0.00      0.00      1.35
11        0.00      0.00      0.00      0.00
12        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 3
CC  id: assembly_3
CC  name: cagggcct
CC  asmb.seed: cagggcc
CC  matrix.nb: 3
CC  sites: 2
CC  consensus.strict: --CAGGGCCT--
CC  consensus.strict.rc: --AGGCCCTG--
CC  consensus.IUPAC: nnCAGGGCCTnn
CC  consensus.IUPAC.rc: NNAGGCCCTGNN
CC  consensus.regexp: [acgt][acgt]CAGGGCCT[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]AGGCCCTG[ACGT][ACGT]
XX
//
AC  assembly_4
XX
ID  ctggaag
XX
DE  nnCTGGAAGnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      2.73      0.00      0.00
4         0.00      0.00      0.00      2.73
5         0.00      0.00      2.73      0.00
6         0.00      0.00      2.73      0.00
7         2.73      0.00      0.00      0.00
8         2.73      0.00      0.00      0.00
9         0.00      0.00      2.73      0.00
10        0.00      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 4
CC  id: assembly_4
CC  name: ctggaag
CC  asmb.seed: ctggaag
CC  matrix.nb: 4
CC  sites: 1
CC  consensus.strict: --CTGGAAG--
CC  consensus.strict.rc: --CTTCCAG--
CC  consensus.IUPAC: nnCTGGAAGnn
CC  consensus.IUPAC.rc: NNCTTCCAGNN
CC  consensus.regexp: [acgt][acgt]CTGGAAG[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]CTTCCAG[ACGT][ACGT]
XX
//
AC  assembly_5
XX
ID  aaggacctgg
XX
DE  nnAAGGACCTGgnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         2.46      0.00      0.00      0.00
4        22.94      0.00      0.00      0.00
5         0.00      0.00     22.94      0.00
6         0.00      0.00     22.94      0.00
7        22.94      0.00      0.00      0.00
8         0.00     22.94      0.00      0.00
9         0.00     22.94      0.00      0.00
10        0.00      0.00      0.00     22.94
11        0.00      0.00      5.00      0.00
12        0.00      0.00      0.94      0.00
13        0.00      0.00      0.00      0.00
14        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 5
CC  id: assembly_5
CC  name: aaggacctgg
CC  asmb.seed: aaggacc
CC  matrix.nb: 5
CC  sites: 4
CC  consensus.strict: --AAGGACCTGg--
CC  consensus.strict.rc: --CCAGGTCCTT--
CC  consensus.IUPAC: nnAAGGACCTGgnn
CC  consensus.IUPAC.rc: NNCCAGGTCCTTNN
CC  consensus.regexp: [acgt][acgt]AAGGACCTGg[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]CCAGGTCCTT[ACGT][ACGT]
XX
//
