One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.221847_2026-01-11.221847_fKPkUw/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m5_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m5_shift0 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=10; shift=0; ncol=10; ssCGGCCGss ; Alignment reference a 1945 2220 82 178 542 783 125 227 1515 1606 c 6097 3697 13241 1894 1423 11188 11739 386 6504 4288 g 4288 6504 386 11739 11188 1423 1894 13241 3697 6097 t 1606 1515 227 125 783 542 178 82 2220 1945

oligos_6nt_mkv4_m5_shift0 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m5; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; ssCGGCCGss ; cor=; Ncor= a 1945 2220 82 178 542 783 125 227 1515 1606 c 6097 3697 13241 1894 1423 11188 11739 386 6504 4288 g 4288 6504 386 11739 11188 1423 1894 13241 3697 6097 t 1606 1515 227 125 783 542 178 82 2220 1945

oligos_6nt_mkv4_m2_shift0 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m2; m=2/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.849209; ssCGCCCGss ; cor=; Ncor= a 1812 2337 74 339 542 776 117 240 1404 1979 c 5608 4045 12632 166 10491 9525 11452 477 5645 4448 g 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 t 1770 1478 182 125 783 861 419 103 1984 1854

oligos_6nt_mkv4_m4_rc_shift0 (oligos_6nt_mkv4_m4_rc)
; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m4_rc; m=3/3; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.719479; ssCGCtCGss ; cor=; Ncor= a 1221 1418 124 199 196 776 135 174 878 1255 c 3726 2651 8234 113 7753 1423 8329 492 3692 2948 g 2598 3717 344 8366 542 2076 266 7935 3012 3311 t 1283 1042 126 150 337 4553 98 227 1246 1314

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m5_shift0 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; ssCGCaGGCGss ; Alignment reference a 945 979 198 156 167 3913 103 234 206 209 790 1010 c 2215 1854 5428 361 5411 974 889 551 5646 380 2544 2087 g 2177 2558 423 5574 502 1096 5008 5236 170 5407 2044 2264 t 882 828 170 128 139 236 219 198 197 223 841 858

oligos_7nt_mkv5_m5_shift0 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m5; m=1/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; ssCGCaGGCGss ; cor=; Ncor= a 945 979 198 156 167 3913 103 234 206 209 790 1010 c 2215 1854 5428 361 5411 974 889 551 5646 380 2544 2087 g 2177 2558 423 5574 502 1096 5008 5236 170 5407 2044 2264 t 882 828 170 128 139 236 219 198 197 223 841 858

oligos_7nt_mkv5_m3_rc_shift0 (oligos_7nt_mkv5_m3_rc)
; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m3_rc; m=2/4; ncol2=12; w=0; offset=0; strand=R; shift=0; score=0.769418; sscGaGGGCGss ; cor=; Ncor= a 1185 1138 820 135 4903 159 251 298 206 129 1093 1216 c 2458 2527 4424 387 1656 696 1072 432 7151 219 2805 2242 g 3059 3072 1837 7049 752 6690 6169 6762 176 7219 2757 3233 t 994 959 615 125 385 151 204 204 163 129 1041 1005

oligos_6nt_mkv4_m2_rc_shift2 (oligos_6nt_mkv4_m2_rc)
; oligos_7nt_mkv5_m5 versus oligos_6nt_mkv4_m2_rc; m=3/4; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.658413; --ssCGGGCGss ; cor=; Ncor= a 0 0 1854 1984 103 419 861 783 125 182 1478 1770 c 0 0 4957 4205 12418 1250 2076 1422 12608 350 5378 4048 g 0 0 4448 5645 477 11452 9525 10491 166 12632 4045 5608 t 0 0 1979 1404 240 117 776 542 339 74 2337 1812

oligos_7nt_mkv5_m4_rc_shift1 (oligos_7nt_mkv5_m4_rc)
; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m4_rc; m=4/4; ncol2=11; w=0; offset=1; strand=R; shift=1; score=0.646018; -ssGGGGGCGss ; cor=; Ncor= a 0 2424 2937 632 843 1235 809 636 174 145 2074 2645 c 0 5104 5295 1196 1360 1776 1251 891 15640 248 4889 4812 g 0 6435 5241 13733 13295 12363 13627 14212 68 15669 7272 6252 t 0 2234 2724 636 699 823 510 458 315 135 1962 2488

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m1_shift8 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=13; shift=8; ncol=21; --------kcCAGGACCTggs ; Alignment reference a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349

oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m1; m=1/9; ncol2=13; w=0; offset=0; strand=D; shift=8; score= 1; --------kcCAGGACCTggs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349

positions_7nt_m5_shift8 (positions_7nt_m5)
; oligos_6nt_mkv4_m1 versus positions_7nt_m5; m=2/9; ncol2=14; w=0; offset=0; strand=D; shift=8; score=0.887257; --------kcmAGGACCTGgv ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916

positions_7nt_m3_shift8 (positions_7nt_m3)
; oligos_6nt_mkv4_m1 versus positions_7nt_m3; m=3/9; ncol2=12; w=0; offset=0; strand=D; shift=8; score=0.841725; --------ssCAGGgCCTgg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 0 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 0 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 0 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552 0

oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)
; oligos_6nt_mkv4_m1 versus oligos_7nt_mkv5_m1; m=4/9; ncol2=16; w=-2; offset=-2; strand=D; shift=6; score=0.787673; ------cttcCAGGACCTGgs ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404

positions_7nt_m1_shift3 (positions_7nt_m1)
; oligos_6nt_mkv4_m1 versus positions_7nt_m1; m=5/9; ncol2=19; w=-5; offset=-5; strand=D; shift=3; score=0.664578; ---smcCtgCCAGGACCTggs ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276

positions_6nt_m1_shift6 (positions_6nt_m1)
; oligos_6nt_mkv4_m1 versus positions_6nt_m1; m=6/9; ncol2=20; w=-2; offset=-2; strand=D; shift=6; score=0.628237; ------cytcCAGGACCTgsc ; cor=; Ncor= a 0 0 0 0 0 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 c 0 0 0 0 0 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 g 0 0 0 0 0 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 t 0 0 0 0 0 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726

positions_7nt_m2_shift3 (positions_7nt_m2)
; oligos_6nt_mkv4_m1 versus positions_7nt_m2; m=7/9; ncol2=17; w=-5; offset=-5; strand=D; shift=3; score=0.597633; ---sccCtgCCAGGACCyks- ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 0 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 0 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 0 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240 0

positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)
; oligos_6nt_mkv4_m1 versus positions_6nt_m2_rc; m=8/9; ncol2=23; w=-8; offset=-8; strand=R; shift=0; score=0.549665; csggccCtgCCAGGACCTgss ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 1145 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 1754 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 1596 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005 1491

positions_6nt_m5_shift0 (positions_6nt_m5)
; oligos_6nt_mkv4_m1 versus positions_6nt_m5; m=9/9; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.506684; crGGtCCTGsCAGGACCTgsc ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173

One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m1_shift1 (positions_6nt_m1)
; positions_6nt_m1; m=0 (reference); ncol1=20; shift=1; ncol=21; -cytcCAGGACCTgscaggss ; Alignment reference a 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 2894 795 1025 1355 1401 c 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 1121 1072 1220 1689 1921 g 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 1097 3645 3016 1828 1727 t 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726 1179 779 1030 1419 1242

positions_6nt_m1_shift1 (positions_6nt_m1)
; positions_6nt_m1 versus positions_6nt_m1; m=1/9; ncol2=20; w=0; offset=0; strand=D; shift=1; score= 1; -cytcCAGGACCTgscaggss ; cor=; Ncor= a 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 2894 795 1025 1355 1401 c 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 1121 1072 1220 1689 1921 g 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 1097 3645 3016 1828 1727 t 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726 1179 779 1030 1419 1242

positions_7nt_m1_rc_shift2 (positions_7nt_m1_rc)
; positions_6nt_m1 versus positions_7nt_m1_rc; m=2/9; ncol2=19; w=0; offset=1; strand=R; shift=2; score=0.823079; --bsccAGGTCCTGGcaGgks ; cor=; Ncor= a 0 0 1522 1276 1252 1223 5819 250 195 881 131 135 205 425 647 1705 4282 565 1348 1405 1774 c 0 0 1867 2064 3196 4462 312 193 266 402 6581 6643 423 339 712 3979 816 706 1477 1610 1858 g 0 0 1888 2152 1562 835 749 6484 6440 398 262 136 260 5720 5196 860 893 5326 3241 2189 2203 t 0 0 1846 1631 1113 603 243 196 222 5442 149 209 6235 639 568 579 1132 526 1057 1919 1288

oligos_7nt_mkv5_m1_shift1 (oligos_7nt_mkv5_m1)
; positions_6nt_m1 versus oligos_7nt_mkv5_m1; m=3/9; ncol2=16; w=0; offset=0; strand=D; shift=1; score=0.778921; -cttcCAGGACCTGgsa---- ; cor=; Ncor= a 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 0 0 0 0 c 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 0 0 0 0 g 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 0 0 0 0 t 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848 0 0 0 0

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_6nt_m1 versus positions_6nt_m2; m=4/9; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.735107; -sssscAGGTCCTGGcaGggc ; cor=; Ncor= a 0 1167 1228 1491 1005 929 4607 175 176 597 110 117 182 292 561 1404 3181 517 1035 852 1067 c 0 1869 1699 1596 1922 3835 385 174 282 365 5512 5571 411 309 771 3220 890 769 1106 1014 2713 g 0 1838 1710 1754 2175 763 736 5483 5361 438 236 157 340 5006 4126 801 1000 4234 2978 2991 1383 t 0 1112 1349 1145 884 459 258 154 167 4586 128 141 5053 379 528 561 915 466 867 1129 823

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; positions_6nt_m1 versus positions_6nt_m5_rc; m=5/9; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.665214; sstgscAGGTCCTGsCAGGaC ; cor=; Ncor= a 271 280 243 173 216 183 928 73 54 165 54 30 40 53 151 162 1090 47 71 896 139 c 411 427 300 325 425 808 111 91 134 122 1110 1252 77 73 701 1032 85 46 139 145 992 g 379 375 324 578 480 186 177 1048 1042 106 109 28 72 1055 342 79 88 1202 1044 147 141 t 278 257 472 263 218 162 123 127 109 946 66 29 1150 158 145 66 76 44 85 151 67

positions_7nt_m5_shift3 (positions_7nt_m5)
; positions_6nt_m1 versus positions_7nt_m5; m=6/9; ncol2=14; w=0; offset=2; strand=D; shift=3; score=0.646006; ---kcmAGGACCTGgva---- ; cor=; Ncor= a 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 0 0 0 0 c 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 0 0 0 0 g 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 0 0 0 0 t 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385 0 0 0 0

positions_7nt_m2_rc_shift4 (positions_7nt_m2_rc)
; positions_6nt_m1 versus positions_7nt_m2_rc; m=7/9; ncol2=17; w=0; offset=3; strand=R; shift=4; score=0.630095; ----smrGGTCCTGGcaGggs ; cor=; Ncor= a 0 0 0 0 1240 1631 1867 334 224 408 118 140 248 217 418 1397 4164 316 959 1268 1481 c 0 0 0 0 2339 2011 484 319 300 402 5824 5800 425 242 417 3903 661 424 1224 1420 1684 g 0 0 0 0 1691 1585 3653 5432 5662 406 315 262 409 5586 5236 681 800 5368 3524 2142 2121 t 0 0 0 0 1126 1169 392 311 210 5180 139 194 5314 351 325 415 771 288 689 1566 1110

oligos_6nt_mkv4_m1_shift3 (oligos_6nt_mkv4_m1)
; positions_6nt_m1 versus oligos_6nt_mkv4_m1; m=8/9; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.628237; ---kcCAGGACCTggs----- ; cor=; Ncor= a 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 0 0 0 0 0 c 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 0 0 0 0 0 g 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 0 0 0 0 0 t 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349 0 0 0 0 0

positions_7nt_m3_shift3 (positions_7nt_m3)
; positions_6nt_m1 versus positions_7nt_m3; m=9/9; ncol2=12; w=0; offset=2; strand=D; shift=3; score=0.534354; ---ssCAGGgCCTgg------ ; cor=; Ncor= a 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 0 0 0 0 0 0 c 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 0 0 0 0 0 0 g 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 0 0 0 0 0 0 t 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m2_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m2_shift3 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCGCCCGss ; Alignment reference a 0 0 0 1812 2337 74 339 542 776 117 240 1404 1979 c 0 0 0 5608 4045 12632 166 10491 9525 11452 477 5645 4448 g 0 0 0 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 t 0 0 0 1770 1478 182 125 783 861 419 103 1984 1854

oligos_6nt_mkv4_m2_shift3 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m2; m=1/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score= 1; ---ssCGCCCGss ; cor=; Ncor= a 0 0 0 1812 2337 74 339 542 776 117 240 1404 1979 c 0 0 0 5608 4045 12632 166 10491 9525 11452 477 5645 4448 g 0 0 0 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 t 0 0 0 1770 1478 182 125 783 861 419 103 1984 1854

oligos_6nt_mkv4_m4_rc_shift3 (oligos_6nt_mkv4_m4_rc)
; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m4_rc; m=2/7; ncol2=10; w=0; offset=0; strand=R; shift=3; score=0.918431; ---ssCGCtCGss ; cor=; Ncor= a 0 0 0 1221 1418 124 199 196 776 135 174 878 1255 c 0 0 0 3726 2651 8234 113 7753 1423 8329 492 3692 2948 g 0 0 0 2598 3717 344 8366 542 2076 266 7935 3012 3311 t 0 0 0 1283 1042 126 150 337 4553 98 227 1246 1314

oligos_6nt_mkv4_m5_shift3 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m5; m=3/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.849209; ---ssCGGCCGss ; cor=; Ncor= a 0 0 0 1945 2220 82 178 542 783 125 227 1515 1606 c 0 0 0 6097 3697 13241 1894 1423 11188 11739 386 6504 4288 g 0 0 0 4288 6504 386 11739 11188 1423 1894 13241 3697 6097 t 0 0 0 1606 1515 227 125 783 542 178 82 2220 1945

oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)
; oligos_6nt_mkv4_m2 versus oligos_7nt_mkv5_m4; m=4/7; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.694721; ---ssCGCCCCCs ; cor=; Ncor= a 0 0 0 2488 1962 135 315 458 510 823 699 636 2724 c 0 0 0 6252 7272 15669 68 14212 13627 12363 13295 13733 5241 g 0 0 0 4812 4889 248 15640 891 1251 1776 1360 1196 5295 t 0 0 0 2645 2074 145 174 636 809 1235 843 632 2937

oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)
; oligos_6nt_mkv4_m2 versus oligos_7nt_mkv5_m3; m=5/7; ncol2=12; w=0; offset=0; strand=D; shift=3; score=0.67743; ---ssCGCCCtCg ; cor=; Ncor= a 0 0 0 1005 1041 129 163 204 204 151 385 125 615 c 0 0 0 3233 2757 7219 176 6762 6169 6690 752 7049 1837 g 0 0 0 2242 2805 219 7151 432 1072 696 1656 387 4424 t 0 0 0 1216 1093 129 206 298 251 159 4903 135 820

oligos_7nt_mkv5_m5_rc_shift3 (oligos_7nt_mkv5_m5_rc)
; oligos_6nt_mkv4_m2 versus oligos_7nt_mkv5_m5_rc; m=6/7; ncol2=12; w=0; offset=0; strand=R; shift=3; score=0.658413; ---ssCGCCtGCG ; cor=; Ncor= a 0 0 0 858 841 223 197 198 219 236 139 128 170 c 0 0 0 2264 2044 5407 170 5236 5008 1096 502 5574 423 g 0 0 0 2087 2544 380 5646 551 889 974 5411 361 5428 t 0 0 0 1010 790 209 206 234 103 3913 167 156 198

positions_6nt_m3_shift0 (positions_6nt_m3)
; oligos_6nt_mkv4_m2 versus positions_6nt_m3; m=7/7; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.610436; ssCCCCGCCCcss ; cor=; Ncor= a 2602 2354 665 483 564 827 1018 341 374 425 2045 2092 2485 c 6204 5886 13286 14281 14114 14275 144 15153 14391 14301 8309 6707 6287 g 5346 5474 1902 1430 1568 912 14639 848 1588 1423 4016 5546 5521 t 2601 3039 900 559 507 739 952 411 400 604 2383 2408 2460

One-to-n matrix alignment; reference matrix: positions_7nt_m1_shift3 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m1_shift3 (positions_7nt_m1)
; positions_7nt_m1; m=0 (reference); ncol1=19; shift=3; ncol=22; ---smcCtgCCAGGACCTggsv ; Alignment reference a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 1846 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 1888 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 1867 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276 1522

positions_7nt_m1_shift3 (positions_7nt_m1)
; positions_7nt_m1 versus positions_7nt_m1; m=1/10; ncol2=19; w=0; offset=0; strand=D; shift=3; score= 1; ---smcCtgCCAGGACCTggsv ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 1846 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 1888 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 1867 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276 1522

positions_7nt_m2_shift3 (positions_7nt_m2)
; positions_7nt_m1 versus positions_7nt_m2; m=2/10; ncol2=17; w=0; offset=0; strand=D; shift=3; score=0.835373; ---sccCtgCCAGGACCyks-- ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 0 0 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 0 0 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 0 0 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240 0 0

positions_6nt_m1_rc_shift3 (positions_6nt_m1_rc)
; positions_7nt_m1 versus positions_6nt_m1_rc; m=3/10; ncol2=20; w=0; offset=0; strand=R; shift=3; score=0.823079; ---sscctgscAGGTCCTGgar ; cor=; Ncor= a 0 0 0 1242 1419 1030 779 1179 726 897 970 5208 154 215 949 150 132 190 368 760 2997 2051 c 0 0 0 1727 1828 3016 3645 1097 1129 1845 4161 279 151 227 306 5759 5839 360 295 779 1495 1395 g 0 0 0 1921 1689 1220 1072 1121 3353 2761 714 532 5837 5666 352 260 160 246 5204 4150 1066 1586 t 0 0 0 1401 1355 1025 795 2894 1083 788 446 272 149 183 4684 122 160 5495 424 602 733 1259

positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)
; positions_7nt_m1 versus positions_6nt_m2_rc; m=4/10; ncol2=23; w=-3; offset=-3; strand=R; shift=0; score=0.812875; csggccCtgCCAGGACCTgsss ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 1145 1349 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 1754 1710 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 1596 1699 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005 1491 1228

oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)
; positions_7nt_m1 versus oligos_7nt_mkv5_m1; m=5/10; ncol2=16; w=0; offset=3; strand=D; shift=6; score=0.804096; ------cttcCAGGACCTGgsa ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848

positions_7nt_m5_shift8 (positions_7nt_m5)
; positions_7nt_m1 versus positions_7nt_m5; m=6/10; ncol2=14; w=0; offset=5; strand=D; shift=8; score= 0.6909; --------kcmAGGACCTGgva ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385

positions_6nt_m5_shift0 (positions_6nt_m5)
; positions_7nt_m1 versus positions_6nt_m5; m=7/10; ncol2=24; w=-3; offset=-3; strand=D; shift=0; score=0.689035; crGGtCCTGsCAGGACCTgsca ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 472 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 324 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 300 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173 243

oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)
; positions_7nt_m1 versus oligos_6nt_mkv4_m1; m=8/10; ncol2=13; w=0; offset=5; strand=D; shift=8; score=0.664578; --------kcCAGGACCTggs- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 0 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 0 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 0 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349 0

positions_7nt_m3_shift8 (positions_7nt_m3)
; positions_7nt_m1 versus positions_7nt_m3; m=9/10; ncol2=12; w=0; offset=5; strand=D; shift=8; score=0.560124; --------ssCAGGgCCTgg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 0 0 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 0 0 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 0 0 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552 0 0

positions_7nt_m4_rc_shift4 (positions_7nt_m4_rc)
; positions_7nt_m1 versus positions_7nt_m4_rc; m=10/10; ncol2=11; w=0; offset=1; strand=R; shift=4; score=0.445044; ----yaCTTCCAGga------- ; cor=; Ncor= a 0 0 0 0 2085 2451 423 337 400 612 110 7674 106 2028 2989 0 0 0 0 0 0 0 c 0 0 0 0 2647 2275 8397 244 244 8142 8578 668 280 2152 2186 0 0 0 0 0 0 0 g 0 0 0 0 2091 2274 244 394 234 289 204 602 8544 3123 1778 0 0 0 0 0 0 0 t 0 0 0 0 2405 2228 164 8253 8350 185 336 284 298 1925 2275 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_7nt_m3_shift8 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m3_shift8 (positions_7nt_m3)
; positions_7nt_m3; m=0 (reference); ncol1=12; shift=8; ncol=20; --------ssCAGGgCCTgg ; Alignment reference a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552

positions_7nt_m3_shift8 (positions_7nt_m3)
; positions_7nt_m3 versus positions_7nt_m3; m=1/9; ncol2=12; w=0; offset=0; strand=D; shift=8; score= 1; --------ssCAGGgCCTgg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552

oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)
; positions_7nt_m3 versus oligos_6nt_mkv4_m1; m=2/9; ncol2=13; w=0; offset=0; strand=D; shift=8; score=0.841725; --------kcCAGGACCTgg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247

positions_7nt_m5_rc_shift7 (positions_7nt_m5_rc)
; positions_7nt_m3 versus positions_7nt_m5_rc; m=3/9; ncol2=14; w=-1; offset=-1; strand=R; shift=7; score=0.770032; -------tbcCAGGTCCTkg ; cor=; Ncor= a 0 0 0 0 0 0 0 2385 1916 1723 1469 9648 223 244 1584 208 194 161 1310 2118 c 0 0 0 0 0 0 0 2575 2925 5152 7595 220 218 294 262 9947 10044 402 1520 2532 g 0 0 0 0 0 0 0 2329 2871 1922 792 462 9851 9696 285 225 87 208 3982 3684 t 0 0 0 0 0 0 0 3279 2856 1771 712 238 276 334 8437 188 243 9797 3756 2234

oligos_7nt_mkv5_m1_rc_shift7 (oligos_7nt_mkv5_m1_rc)
; positions_7nt_m3 versus oligos_7nt_mkv5_m1_rc; m=4/9; ncol2=16; w=-1; offset=-1; strand=R; shift=7; score=0.658067; -------tscCAGGTCCTGg ; cor=; Ncor= a 0 0 0 0 0 0 0 1848 1404 1188 1102 6949 210 235 1052 154 204 213 680 884 c 0 0 0 0 0 0 0 1950 2307 4222 5632 240 204 260 363 7334 7495 398 489 955 g 0 0 0 0 0 0 0 1921 2401 1459 659 575 7377 7272 325 314 126 231 6018 5395 t 0 0 0 0 0 0 0 2253 1860 1103 579 208 181 205 6232 170 147 7130 785 738

positions_7nt_m2_shift3 (positions_7nt_m2)
; positions_7nt_m3 versus positions_7nt_m2; m=5/9; ncol2=17; w=-5; offset=-5; strand=D; shift=3; score=0.564986; ---sccCtgCCAGGACCyks ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240

positions_7nt_m1_shift3 (positions_7nt_m1)
; positions_7nt_m3 versus positions_7nt_m1; m=6/9; ncol2=19; w=-5; offset=-5; strand=D; shift=3; score=0.560124; ---smcCtgCCAGGACCTgg ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252

positions_6nt_m1_shift6 (positions_6nt_m1)
; positions_7nt_m3 versus positions_6nt_m1; m=7/9; ncol2=20; w=-2; offset=-2; strand=D; shift=6; score=0.534354; ------cytcCAGGACCTgs ; cor=; Ncor= a 0 0 0 0 0 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 c 0 0 0 0 0 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 g 0 0 0 0 0 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 t 0 0 0 0 0 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897

positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)
; positions_7nt_m3 versus positions_6nt_m2_rc; m=8/9; ncol2=23; w=-8; offset=-8; strand=R; shift=0; score=0.46389; csggccCtgCCAGGACCTgs ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005

positions_6nt_m5_shift0 (positions_6nt_m5)
; positions_7nt_m3 versus positions_6nt_m5; m=9/9; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.432158; crGGtCCTGsCAGGACCTgs ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift6 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=16; shift=6; ncol=22; ------cttcCAGGACCTGgsa ; Alignment reference a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848

oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1 versus oligos_7nt_mkv5_m1; m=1/9; ncol2=16; w=0; offset=0; strand=D; shift=6; score= 1; ------cttcCAGGACCTGgsa ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848

positions_7nt_m5_shift8 (positions_7nt_m5)
; oligos_7nt_mkv5_m1 versus positions_7nt_m5; m=2/9; ncol2=14; w=0; offset=2; strand=D; shift=8; score=0.832417; --------kcmAGGACCTGgva ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385

positions_7nt_m1_shift3 (positions_7nt_m1)
; oligos_7nt_mkv5_m1 versus positions_7nt_m1; m=3/9; ncol2=19; w=-3; offset=-3; strand=D; shift=3; score=0.804096; ---smcCtgCCAGGACCTggsv ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 1846 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 1888 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 1867 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276 1522

oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)
; oligos_7nt_mkv5_m1 versus oligos_6nt_mkv4_m1; m=4/9; ncol2=13; w=0; offset=2; strand=D; shift=8; score=0.787673; --------kcCAGGACCTggs- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 0 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 0 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 0 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349 0

positions_6nt_m1_shift6 (positions_6nt_m1)
; oligos_7nt_mkv5_m1 versus positions_6nt_m1; m=5/9; ncol2=20; w=0; offset=0; strand=D; shift=6; score=0.778921; ------cytcCAGGACCTgsca ; cor=; Ncor= a 0 0 0 0 0 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 2894 c 0 0 0 0 0 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 1121 g 0 0 0 0 0 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 1097 t 0 0 0 0 0 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726 1179

positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)
; oligos_7nt_mkv5_m1 versus positions_6nt_m2_rc; m=6/9; ncol2=23; w=-6; offset=-6; strand=R; shift=0; score=0.662466; csggccCtgCCAGGACCTgsss ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 1145 1349 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 1754 1710 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 1596 1699 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005 1491 1228

positions_7nt_m3_rc_shift9 (positions_7nt_m3_rc)
; oligos_7nt_mkv5_m1 versus positions_7nt_m3_rc; m=7/9; ncol2=12; w=0; offset=3; strand=R; shift=9; score=0.658067; ---------ccAGGcCCTGss- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2552 2828 10980 347 439 2007 348 210 518 187 2302 3106 0 c 0 0 0 0 0 0 0 0 0 4706 5486 687 156 403 8072 11679 12218 482 261 3609 4078 0 g 0 0 0 0 0 0 0 0 0 3224 3041 763 12211 11752 640 327 243 422 12257 4775 3562 0 t 0 0 0 0 0 0 0 0 0 2457 1584 509 225 345 2220 585 268 11517 234 2253 2193 0

positions_7nt_m2_shift3 (positions_7nt_m2)
; oligos_7nt_mkv5_m1 versus positions_7nt_m2; m=8/9; ncol2=17; w=-3; offset=-3; strand=D; shift=3; score=0.62656; ---sccCtgCCAGGACCyks-- ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 0 0 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 0 0 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 0 0 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240 0 0

positions_6nt_m5_shift0 (positions_6nt_m5)
; oligos_7nt_mkv5_m1 versus positions_6nt_m5; m=9/9; ncol2=24; w=-6; offset=-6; strand=D; shift=0; score=0.555913; crGGtCCTGsCAGGACCTgsca ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 472 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 324 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 300 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173 243

One-to-n matrix alignment; reference matrix: positions_7nt_m4_shift7 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m4_shift7 (positions_7nt_m4)
; positions_7nt_m4; m=0 (reference); ncol1=11; shift=7; ncol=18; -------tcCTGGAAGtr ; Alignment reference a 0 0 0 0 0 0 0 2275 1925 298 284 336 185 8350 8253 164 2228 2405 c 0 0 0 0 0 0 0 1778 3123 8544 602 204 289 234 394 244 2274 2091 g 0 0 0 0 0 0 0 2186 2152 280 668 8578 8142 244 244 8397 2275 2647 t 0 0 0 0 0 0 0 2989 2028 106 7674 110 612 400 337 423 2451 2085

positions_7nt_m4_shift7 (positions_7nt_m4)
; positions_7nt_m4 versus positions_7nt_m4; m=1/4; ncol2=11; w=0; offset=0; strand=D; shift=7; score= 1; -------tcCTGGAAGtr ; cor=; Ncor= a 0 0 0 0 0 0 0 2275 1925 298 284 336 185 8350 8253 164 2228 2405 c 0 0 0 0 0 0 0 1778 3123 8544 602 204 289 234 394 244 2274 2091 g 0 0 0 0 0 0 0 2186 2152 280 668 8578 8142 244 244 8397 2275 2647 t 0 0 0 0 0 0 0 2989 2028 106 7674 110 612 400 337 423 2451 2085

positions_6nt_m4_rc_shift8 (positions_6nt_m4_rc)
; positions_7nt_m4 versus positions_6nt_m4_rc; m=2/4; ncol2=10; w=0; offset=1; strand=R; shift=8; score=0.863331; --------ccTGGAAGgr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1184 1175 0 18 0 6166 5998 7 1561 1595 c 0 0 0 0 0 0 0 0 2396 2656 87 45 4 6 238 60 1388 1320 g 0 0 0 0 0 0 0 0 1280 1411 6 6222 6135 9 13 6196 2076 1852 t 0 0 0 0 0 0 0 0 1425 1043 6192 0 146 104 36 22 1260 1518

positions_7nt_m2_rc_shift2 (positions_7nt_m2_rc)
; positions_7nt_m4 versus positions_7nt_m2_rc; m=3/4; ncol2=17; w=-5; offset=-5; strand=R; shift=2; score=0.49911; --smrGGTCCTGGcaGgg ; cor=; Ncor= a 0 0 1240 1631 1867 334 224 408 118 140 248 217 418 1397 4164 316 959 1268 c 0 0 2339 2011 484 319 300 402 5824 5800 425 242 417 3903 661 424 1224 1420 g 0 0 1691 1585 3653 5432 5662 406 315 262 409 5586 5236 681 800 5368 3524 2142 t 0 0 1126 1169 392 311 210 5180 139 194 5314 351 325 415 771 288 689 1566

positions_7nt_m1_rc_shift0 (positions_7nt_m1_rc)
; positions_7nt_m4 versus positions_7nt_m1_rc; m=4/4; ncol2=19; w=-7; offset=-7; strand=R; shift=0; score=0.445044; bsccAGGTCCTGGcaGgk ; cor=; Ncor= a 1522 1276 1252 1223 5819 250 195 881 131 135 205 425 647 1705 4282 565 1348 1405 c 1867 2064 3196 4462 312 193 266 402 6581 6643 423 339 712 3979 816 706 1477 1610 g 1888 2152 1562 835 749 6484 6440 398 262 136 260 5720 5196 860 893 5326 3241 2189 t 1846 1631 1113 603 243 196 222 5442 149 209 6235 639 568 579 1132 526 1057 1919

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift3 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m2_shift3 (positions_7nt_m2)
; positions_7nt_m2; m=0 (reference); ncol1=17; shift=3; ncol=20; ---sccCtgCCAGGACCyks ; Alignment reference a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240

positions_7nt_m2_shift3 (positions_7nt_m2)
; positions_7nt_m2 versus positions_7nt_m2; m=1/11; ncol2=17; w=0; offset=0; strand=D; shift=3; score= 1; ---sccCtgCCAGGACCyks ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240

positions_7nt_m1_shift3 (positions_7nt_m1)
; positions_7nt_m2 versus positions_7nt_m1; m=2/11; ncol2=19; w=0; offset=0; strand=D; shift=3; score=0.835373; ---smcCtgCCAGGACCTgg ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252

positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)
; positions_7nt_m2 versus positions_6nt_m2_rc; m=3/11; ncol2=23; w=-3; offset=-3; strand=R; shift=0; score=0.685271; csggccCtgCCAGGACCTgs ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005

positions_6nt_m1_rc_shift3 (positions_6nt_m1_rc)
; positions_7nt_m2 versus positions_6nt_m1_rc; m=4/11; ncol2=20; w=0; offset=0; strand=R; shift=3; score=0.630095; ---sscctgscAGGTCCTGg ; cor=; Ncor= a 0 0 0 1242 1419 1030 779 1179 726 897 970 5208 154 215 949 150 132 190 368 760 c 0 0 0 1727 1828 3016 3645 1097 1129 1845 4161 279 151 227 306 5759 5839 360 295 779 g 0 0 0 1921 1689 1220 1072 1121 3353 2761 714 532 5837 5666 352 260 160 246 5204 4150 t 0 0 0 1401 1355 1025 795 2894 1083 788 446 272 149 183 4684 122 160 5495 424 602

oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)
; positions_7nt_m2 versus oligos_7nt_mkv5_m1; m=5/11; ncol2=16; w=0; offset=3; strand=D; shift=6; score=0.62656; ------cttcCAGGACCTGg ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188

oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)
; positions_7nt_m2 versus oligos_6nt_mkv4_m1; m=6/11; ncol2=13; w=0; offset=5; strand=D; shift=8; score=0.597633; --------kcCAGGACCTgg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247

positions_6nt_m5_shift0 (positions_6nt_m5)
; positions_7nt_m2 versus positions_6nt_m5; m=7/11; ncol2=24; w=-3; offset=-3; strand=D; shift=0; score=0.591525; crGGtCCTGsCAGGACCTgs ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216

positions_7nt_m3_shift8 (positions_7nt_m3)
; positions_7nt_m2 versus positions_7nt_m3; m=8/11; ncol2=12; w=0; offset=5; strand=D; shift=8; score=0.564986; --------ssCAGGgCCTgg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552

positions_7nt_m5_rc_shift7 (positions_7nt_m5_rc)
; positions_7nt_m2 versus positions_7nt_m5_rc; m=9/11; ncol2=14; w=0; offset=4; strand=R; shift=7; score=0.54683; -------tbcCAGGTCCTkg ; cor=; Ncor= a 0 0 0 0 0 0 0 2385 1916 1723 1469 9648 223 244 1584 208 194 161 1310 2118 c 0 0 0 0 0 0 0 2575 2925 5152 7595 220 218 294 262 9947 10044 402 1520 2532 g 0 0 0 0 0 0 0 2329 2871 1922 792 462 9851 9696 285 225 87 208 3982 3684 t 0 0 0 0 0 0 0 3279 2856 1771 712 238 276 334 8437 188 243 9797 3756 2234

positions_7nt_m4_rc_shift4 (positions_7nt_m4_rc)
; positions_7nt_m2 versus positions_7nt_m4_rc; m=10/11; ncol2=11; w=0; offset=1; strand=R; shift=4; score=0.49911; ----yaCTTCCAGga----- ; cor=; Ncor= a 0 0 0 0 2085 2451 423 337 400 612 110 7674 106 2028 2989 0 0 0 0 0 c 0 0 0 0 2647 2275 8397 244 244 8142 8578 668 280 2152 2186 0 0 0 0 0 g 0 0 0 0 2091 2274 244 394 234 289 204 602 8544 3123 1778 0 0 0 0 0 t 0 0 0 0 2405 2228 164 8253 8350 185 336 284 298 1925 2275 0 0 0 0 0

positions_6nt_m4_shift4 (positions_6nt_m4)
; positions_7nt_m2 versus positions_6nt_m4; m=11/11; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.443759; ----ycCTTCCAgg------ ; cor=; Ncor= a 0 0 0 0 1518 1260 22 36 104 146 0 6192 1043 1425 0 0 0 0 0 0 c 0 0 0 0 1852 2076 6196 13 9 6135 6222 6 1411 1280 0 0 0 0 0 0 g 0 0 0 0 1320 1388 60 238 6 4 45 87 2656 2396 0 0 0 0 0 0 t 0 0 0 0 1595 1561 7 5998 6166 0 18 0 1175 1184 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m3_shift0 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m3_shift0 (positions_6nt_m3)
; positions_6nt_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; ssCCCCGCCCcss ; Alignment reference a 2602 2354 665 483 564 827 1018 341 374 425 2045 2092 2485 c 6204 5886 13286 14281 14114 14275 144 15153 14391 14301 8309 6707 6287 g 5346 5474 1902 1430 1568 912 14639 848 1588 1423 4016 5546 5521 t 2601 3039 900 559 507 739 952 411 400 604 2383 2408 2460

positions_6nt_m3_shift0 (positions_6nt_m3)
; positions_6nt_m3 versus positions_6nt_m3; m=1/5; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; ssCCCCGCCCcss ; cor=; Ncor= a 2602 2354 665 483 564 827 1018 341 374 425 2045 2092 2485 c 6204 5886 13286 14281 14114 14275 144 15153 14391 14301 8309 6707 6287 g 5346 5474 1902 1430 1568 912 14639 848 1588 1423 4016 5546 5521 t 2601 3039 900 559 507 739 952 411 400 604 2383 2408 2460

oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)
; positions_6nt_m3 versus oligos_7nt_mkv5_m4; m=2/5; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.619899; ---ssCGCCCCCs ; cor=; Ncor= a 0 0 0 2488 1962 135 315 458 510 823 699 636 2724 c 0 0 0 6252 7272 15669 68 14212 13627 12363 13295 13733 5241 g 0 0 0 4812 4889 248 15640 891 1251 1776 1360 1196 5295 t 0 0 0 2645 2074 145 174 636 809 1235 843 632 2937

oligos_6nt_mkv4_m2_shift3 (oligos_6nt_mkv4_m2)
; positions_6nt_m3 versus oligos_6nt_mkv4_m2; m=3/5; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.610436; ---ssCGCCCGss ; cor=; Ncor= a 0 0 0 1812 2337 74 339 542 776 117 240 1404 1979 c 0 0 0 5608 4045 12632 166 10491 9525 11452 477 5645 4448 g 0 0 0 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 t 0 0 0 1770 1478 182 125 783 861 419 103 1984 1854

oligos_6nt_mkv4_m4_rc_shift3 (oligos_6nt_mkv4_m4_rc)
; positions_6nt_m3 versus oligos_6nt_mkv4_m4_rc; m=4/5; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.538475; ---ssCGCtCGss ; cor=; Ncor= a 0 0 0 1221 1418 124 199 196 776 135 174 878 1255 c 0 0 0 3726 2651 8234 113 7753 1423 8329 492 3692 2948 g 0 0 0 2598 3717 344 8366 542 2076 266 7935 3012 3311 t 0 0 0 1283 1042 126 150 337 4553 98 227 1246 1314

oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)
; positions_6nt_m3 versus oligos_7nt_mkv5_m3; m=5/5; ncol2=12; w=0; offset=3; strand=D; shift=3; score=0.535069; ---ssCGCCCtCg ; cor=; Ncor= a 0 0 0 1005 1041 129 163 204 204 151 385 125 615 c 0 0 0 3233 2757 7219 176 6762 6169 6690 752 7049 1837 g 0 0 0 2242 2805 219 7151 432 1072 696 1656 387 4424 t 0 0 0 1216 1093 129 206 298 251 159 4903 135 820

One-to-n matrix alignment; reference matrix: positions_6nt_m4_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m4_shift1 (positions_6nt_m4)
; positions_6nt_m4; m=0 (reference); ncol1=10; shift=1; ncol=11; -ycCTTCCAgg ; Alignment reference a 0 1518 1260 22 36 104 146 0 6192 1043 1425 c 0 1852 2076 6196 13 9 6135 6222 6 1411 1280 g 0 1320 1388 60 238 6 4 45 87 2656 2396 t 0 1595 1561 7 5998 6166 0 18 0 1175 1184

positions_6nt_m4_shift1 (positions_6nt_m4)
; positions_6nt_m4 versus positions_6nt_m4; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 1; -ycCTTCCAgg ; cor=; Ncor= a 0 1518 1260 22 36 104 146 0 6192 1043 1425 c 0 1852 2076 6196 13 9 6135 6222 6 1411 1280 g 0 1320 1388 60 238 6 4 45 87 2656 2396 t 0 1595 1561 7 5998 6166 0 18 0 1175 1184

positions_7nt_m4_rc_shift1 (positions_7nt_m4_rc)
; positions_6nt_m4 versus positions_7nt_m4_rc; m=2/3; ncol2=11; w=0; offset=0; strand=R; shift=1; score=0.863331; -yaCTTCCAGg ; cor=; Ncor= a 0 2085 2451 423 337 400 612 110 7674 106 2028 c 0 2647 2275 8397 244 244 8142 8578 668 280 2152 g 0 2091 2274 244 394 234 289 204 602 8544 3123 t 0 2405 2228 164 8253 8350 185 336 284 298 1925

positions_7nt_m2_shift0 (positions_7nt_m2)
; positions_6nt_m4 versus positions_7nt_m2; m=3/3; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.443759; sccCtgCCAGG ; cor=; Ncor= a 1110 1566 689 288 771 415 325 351 5314 194 139 c 2121 2142 3524 5368 800 681 5236 5586 409 262 315 g 1684 1420 1224 424 661 3903 417 242 425 5800 5824 t 1481 1268 959 316 4164 1397 418 217 248 140 118

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_6nt_m2; m=0 (reference); ncol1=23; shift=1; ncol=24; -sssscAGGTCCTGGcaGggccsg ; Alignment reference a 0 1167 1228 1491 1005 929 4607 175 176 597 110 117 182 292 561 1404 3181 517 1035 852 1067 1274 1349 1335 c 0 1869 1699 1596 1922 3835 385 174 282 365 5512 5571 411 309 771 3220 890 769 1106 1014 2713 2636 1649 1487 g 0 1838 1710 1754 2175 763 736 5483 5361 438 236 157 340 5006 4126 801 1000 4234 2978 2991 1383 1200 1789 1888 t 0 1112 1349 1145 884 459 258 154 167 4586 128 141 5053 379 528 561 915 466 867 1129 823 876 1199 1276

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_6nt_m2 versus positions_6nt_m2; m=1/9; ncol2=23; w=0; offset=0; strand=D; shift=1; score= 1; -sssscAGGTCCTGGcaGggccsg ; cor=; Ncor= a 0 1167 1228 1491 1005 929 4607 175 176 597 110 117 182 292 561 1404 3181 517 1035 852 1067 1274 1349 1335 c 0 1869 1699 1596 1922 3835 385 174 282 365 5512 5571 411 309 771 3220 890 769 1106 1014 2713 2636 1649 1487 g 0 1838 1710 1754 2175 763 736 5483 5361 438 236 157 340 5006 4126 801 1000 4234 2978 2991 1383 1200 1789 1888 t 0 1112 1349 1145 884 459 258 154 167 4586 128 141 5053 379 528 561 915 466 867 1129 823 876 1199 1276

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; positions_6nt_m2 versus positions_6nt_m5_rc; m=2/9; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.835937; sstgscAGGTCCTGsCAGGaCCyg ; cor=; Ncor= a 271 280 243 173 216 183 928 73 54 165 54 30 40 53 151 162 1090 47 71 896 139 151 254 270 c 411 427 300 325 425 808 111 91 134 122 1110 1252 77 73 701 1032 85 46 139 145 992 978 417 301 g 379 375 324 578 480 186 177 1048 1042 106 109 28 72 1055 342 79 88 1202 1044 147 141 95 258 446 t 278 257 472 263 218 162 123 127 109 946 66 29 1150 158 145 66 76 44 85 151 67 115 410 322

positions_7nt_m1_rc_shift2 (positions_7nt_m1_rc)
; positions_6nt_m2 versus positions_7nt_m1_rc; m=3/9; ncol2=19; w=0; offset=1; strand=R; shift=2; score=0.812875; --bsccAGGTCCTGGcaGgks--- ; cor=; Ncor= a 0 0 1522 1276 1252 1223 5819 250 195 881 131 135 205 425 647 1705 4282 565 1348 1405 1774 0 0 0 c 0 0 1867 2064 3196 4462 312 193 266 402 6581 6643 423 339 712 3979 816 706 1477 1610 1858 0 0 0 g 0 0 1888 2152 1562 835 749 6484 6440 398 262 136 260 5720 5196 860 893 5326 3241 2189 2203 0 0 0 t 0 0 1846 1631 1113 603 243 196 222 5442 149 209 6235 639 568 579 1132 526 1057 1919 1288 0 0 0

positions_6nt_m1_shift1 (positions_6nt_m1)
; positions_6nt_m2 versus positions_6nt_m1; m=4/9; ncol2=20; w=0; offset=0; strand=D; shift=1; score=0.735107; -cytcCAGGACCTgscaggss--- ; cor=; Ncor= a 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 2894 795 1025 1355 1401 0 0 0 c 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 1121 1072 1220 1689 1921 0 0 0 g 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 1097 3645 3016 1828 1727 0 0 0 t 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726 1179 779 1030 1419 1242 0 0 0

positions_7nt_m2_rc_shift4 (positions_7nt_m2_rc)
; positions_6nt_m2 versus positions_7nt_m2_rc; m=5/9; ncol2=17; w=0; offset=3; strand=R; shift=4; score=0.685271; ----smrGGTCCTGGcaGggs--- ; cor=; Ncor= a 0 0 0 0 1240 1631 1867 334 224 408 118 140 248 217 418 1397 4164 316 959 1268 1481 0 0 0 c 0 0 0 0 2339 2011 484 319 300 402 5824 5800 425 242 417 3903 661 424 1224 1420 1684 0 0 0 g 0 0 0 0 1691 1585 3653 5432 5662 406 315 262 409 5586 5236 681 800 5368 3524 2142 2121 0 0 0 t 0 0 0 0 1126 1169 392 311 210 5180 139 194 5314 351 325 415 771 288 689 1566 1110 0 0 0

oligos_7nt_mkv5_m1_rc_shift2 (oligos_7nt_mkv5_m1_rc)
; positions_6nt_m2 versus oligos_7nt_mkv5_m1_rc; m=6/9; ncol2=16; w=0; offset=1; strand=R; shift=2; score=0.662466; --tscCAGGTCCTGgaag------ ; cor=; Ncor= a 0 0 1848 1404 1188 1102 6949 210 235 1052 154 204 213 680 884 4433 2844 1374 0 0 0 0 0 0 c 0 0 1950 2307 4222 5632 240 204 260 363 7334 7495 398 489 955 1617 1591 1843 0 0 0 0 0 0 g 0 0 1921 2401 1459 659 575 7377 7272 325 314 126 231 6018 5395 1057 1973 3521 0 0 0 0 0 0 t 0 0 2253 1860 1103 579 208 181 205 6232 170 147 7130 785 738 865 1564 1234 0 0 0 0 0 0

positions_7nt_m5_rc_shift2 (positions_7nt_m5_rc)
; positions_6nt_m2 versus positions_7nt_m5_rc; m=7/9; ncol2=14; w=0; offset=1; strand=R; shift=2; score=0.564019; --tbcCAGGTCCTkgm-------- ; cor=; Ncor= a 0 0 2385 1916 1723 1469 9648 223 244 1584 208 194 161 1310 2118 3013 0 0 0 0 0 0 0 0 c 0 0 2575 2925 5152 7595 220 218 294 262 9947 10044 402 1520 2532 3336 0 0 0 0 0 0 0 0 g 0 0 2329 2871 1922 792 462 9851 9696 285 225 87 208 3982 3684 2031 0 0 0 0 0 0 0 0 t 0 0 3279 2856 1771 712 238 276 334 8437 188 243 9797 3756 2234 2188 0 0 0 0 0 0 0 0

oligos_6nt_mkv4_m1_rc_shift3 (oligos_6nt_mkv4_m1_rc)
; positions_6nt_m2 versus oligos_6nt_mkv4_m1_rc; m=8/9; ncol2=13; w=0; offset=2; strand=R; shift=3; score=0.549665; ---sccAGGTCCTGgm-------- ; cor=; Ncor= a 0 0 0 2349 2247 2399 9723 323 316 1640 195 227 201 622 2362 3549 0 0 0 0 0 0 0 0 c 0 0 0 3408 4648 6637 521 267 346 456 11541 11671 502 503 2849 3808 0 0 0 0 0 0 0 0 g 0 0 0 3550 2882 1663 1591 11415 11327 485 352 158 239 10374 4729 2615 0 0 0 0 0 0 0 0 t 0 0 0 2981 2511 1589 453 283 299 9707 200 232 11346 789 2348 2316 0 0 0 0 0 0 0 0

positions_7nt_m3_rc_shift4 (positions_7nt_m3_rc)
; positions_6nt_m2 versus positions_7nt_m3_rc; m=9/9; ncol2=12; w=0; offset=3; strand=R; shift=4; score=0.46389; ----ccAGGcCCTGss-------- ; cor=; Ncor= a 0 0 0 0 2552 2828 10980 347 439 2007 348 210 518 187 2302 3106 0 0 0 0 0 0 0 0 c 0 0 0 0 4706 5486 687 156 403 8072 11679 12218 482 261 3609 4078 0 0 0 0 0 0 0 0 g 0 0 0 0 3224 3041 763 12211 11752 640 327 243 422 12257 4775 3562 0 0 0 0 0 0 0 0 t 0 0 0 0 2457 1584 509 225 345 2220 585 268 11517 234 2253 2193 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m2_shift0 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=0; ncol=11; wwATTTTTAww ; Alignment reference a 5010 4746 15610 923 902 753 694 1291 15373 5501 5786 c 2558 3893 538 698 519 554 842 958 601 3067 3323 g 3788 2863 858 675 679 491 652 628 836 3463 2694 t 6391 6245 741 15451 15647 15949 15559 14870 937 5716 5944

oligos_7nt_mkv5_m2_shift0 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2 versus oligos_7nt_mkv5_m2; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwATTTTTAww ; cor=; Ncor= a 5010 4746 15610 923 902 753 694 1291 15373 5501 5786 c 2558 3893 538 698 519 554 842 958 601 3067 3323 g 3788 2863 858 675 679 491 652 628 836 3463 2694 t 6391 6245 741 15451 15647 15949 15559 14870 937 5716 5944

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift3 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCGCCCtCgss ; Alignment reference a 0 0 0 1005 1041 129 163 204 204 151 385 125 615 959 994 c 0 0 0 3233 2757 7219 176 6762 6169 6690 752 7049 1837 3072 3059 g 0 0 0 2242 2805 219 7151 432 1072 696 1656 387 4424 2527 2458 t 0 0 0 1216 1093 129 206 298 251 159 4903 135 820 1138 1185

oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m3; m=1/6; ncol2=12; w=0; offset=0; strand=D; shift=3; score= 1; ---ssCGCCCtCgss ; cor=; Ncor= a 0 0 0 1005 1041 129 163 204 204 151 385 125 615 959 994 c 0 0 0 3233 2757 7219 176 6762 6169 6690 752 7049 1837 3072 3059 g 0 0 0 2242 2805 219 7151 432 1072 696 1656 387 4424 2527 2458 t 0 0 0 1216 1093 129 206 298 251 159 4903 135 820 1138 1185

oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m4; m=2/6; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.795361; ---ssCGCCCCCss- ; cor=; Ncor= a 0 0 0 2488 1962 135 315 458 510 823 699 636 2724 2234 0 c 0 0 0 6252 7272 15669 68 14212 13627 12363 13295 13733 5241 6435 0 g 0 0 0 4812 4889 248 15640 891 1251 1776 1360 1196 5295 5104 0 t 0 0 0 2645 2074 145 174 636 809 1235 843 632 2937 2424 0

oligos_7nt_mkv5_m5_rc_shift3 (oligos_7nt_mkv5_m5_rc)
; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m5_rc; m=3/6; ncol2=12; w=0; offset=0; strand=R; shift=3; score=0.769418; ---ssCGCCtGCGss ; cor=; Ncor= a 0 0 0 858 841 223 197 198 219 236 139 128 170 828 882 c 0 0 0 2264 2044 5407 170 5236 5008 1096 502 5574 423 2558 2177 g 0 0 0 2087 2544 380 5646 551 889 974 5411 361 5428 1854 2215 t 0 0 0 1010 790 209 206 234 103 3913 167 156 198 979 945

oligos_6nt_mkv4_m2_shift3 (oligos_6nt_mkv4_m2)
; oligos_7nt_mkv5_m3 versus oligos_6nt_mkv4_m2; m=4/6; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.67743; ---ssCGCCCGss-- ; cor=; Ncor= a 0 0 0 1812 2337 74 339 542 776 117 240 1404 1979 0 0 c 0 0 0 5608 4045 12632 166 10491 9525 11452 477 5645 4448 0 0 g 0 0 0 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 0 0 t 0 0 0 1770 1478 182 125 783 861 419 103 1984 1854 0 0

oligos_6nt_mkv4_m4_rc_shift3 (oligos_6nt_mkv4_m4_rc)
; oligos_7nt_mkv5_m3 versus oligos_6nt_mkv4_m4_rc; m=5/6; ncol2=10; w=0; offset=0; strand=R; shift=3; score=0.608248; ---ssCGCtCGss-- ; cor=; Ncor= a 0 0 0 1221 1418 124 199 196 776 135 174 878 1255 0 0 c 0 0 0 3726 2651 8234 113 7753 1423 8329 492 3692 2948 0 0 g 0 0 0 2598 3717 344 8366 542 2076 266 7935 3012 3311 0 0 t 0 0 0 1283 1042 126 150 337 4553 98 227 1246 1314 0 0

positions_6nt_m3_shift0 (positions_6nt_m3)
; oligos_7nt_mkv5_m3 versus positions_6nt_m3; m=6/6; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.535069; ssCCCCGCCCcss-- ; cor=; Ncor= a 2602 2354 665 483 564 827 1018 341 374 425 2045 2092 2485 0 0 c 6204 5886 13286 14281 14114 14275 144 15153 14391 14301 8309 6707 6287 0 0 g 5346 5474 1902 1430 1568 912 14639 848 1588 1423 4016 5546 5521 0 0 t 2601 3039 900 559 507 739 952 411 400 604 2383 2408 2460 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m4_shift3 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---ssCGCCCCCss ; Alignment reference a 0 0 0 2488 1962 135 315 458 510 823 699 636 2724 2234 c 0 0 0 6252 7272 15669 68 14212 13627 12363 13295 13733 5241 6435 g 0 0 0 4812 4889 248 15640 891 1251 1776 1360 1196 5295 5104 t 0 0 0 2645 2074 145 174 636 809 1235 843 632 2937 2424

oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m4; m=1/5; ncol2=11; w=0; offset=0; strand=D; shift=3; score= 1; ---ssCGCCCCCss ; cor=; Ncor= a 0 0 0 2488 1962 135 315 458 510 823 699 636 2724 2234 c 0 0 0 6252 7272 15669 68 14212 13627 12363 13295 13733 5241 6435 g 0 0 0 4812 4889 248 15640 891 1251 1776 1360 1196 5295 5104 t 0 0 0 2645 2074 145 174 636 809 1235 843 632 2937 2424

oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m3; m=2/5; ncol2=12; w=0; offset=0; strand=D; shift=3; score=0.795361; ---ssCGCCCtCgs ; cor=; Ncor= a 0 0 0 1005 1041 129 163 204 204 151 385 125 615 959 c 0 0 0 3233 2757 7219 176 6762 6169 6690 752 7049 1837 3072 g 0 0 0 2242 2805 219 7151 432 1072 696 1656 387 4424 2527 t 0 0 0 1216 1093 129 206 298 251 159 4903 135 820 1138

oligos_6nt_mkv4_m2_shift3 (oligos_6nt_mkv4_m2)
; oligos_7nt_mkv5_m4 versus oligos_6nt_mkv4_m2; m=3/5; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.694721; ---ssCGCCCGss- ; cor=; Ncor= a 0 0 0 1812 2337 74 339 542 776 117 240 1404 1979 0 c 0 0 0 5608 4045 12632 166 10491 9525 11452 477 5645 4448 0 g 0 0 0 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 0 t 0 0 0 1770 1478 182 125 783 861 419 103 1984 1854 0

oligos_7nt_mkv5_m5_rc_shift3 (oligos_7nt_mkv5_m5_rc)
; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m5_rc; m=4/5; ncol2=12; w=0; offset=0; strand=R; shift=3; score=0.646018; ---ssCGCCtGCGs ; cor=; Ncor= a 0 0 0 858 841 223 197 198 219 236 139 128 170 828 c 0 0 0 2264 2044 5407 170 5236 5008 1096 502 5574 423 2558 g 0 0 0 2087 2544 380 5646 551 889 974 5411 361 5428 1854 t 0 0 0 1010 790 209 206 234 103 3913 167 156 198 979

positions_6nt_m3_shift0 (positions_6nt_m3)
; oligos_7nt_mkv5_m4 versus positions_6nt_m3; m=5/5; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.619899; ssCCCCGCCCcss- ; cor=; Ncor= a 2602 2354 665 483 564 827 1018 341 374 425 2045 2092 2485 0 c 6204 5886 13286 14281 14114 14275 144 15153 14391 14301 8309 6707 6287 0 g 5346 5474 1902 1430 1568 912 14639 848 1588 1423 4016 5546 5521 0 t 2601 3039 900 559 507 739 952 411 400 604 2383 2408 2460 0

One-to-n matrix alignment; reference matrix: positions_7nt_m5_shift8 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m5_shift8 (positions_7nt_m5)
; positions_7nt_m5; m=0 (reference); ncol1=14; shift=8; ncol=22; --------kcmAGGACCTGgva ; Alignment reference a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385

positions_7nt_m5_shift8 (positions_7nt_m5)
; positions_7nt_m5 versus positions_7nt_m5; m=1/9; ncol2=14; w=0; offset=0; strand=D; shift=8; score= 1; --------kcmAGGACCTGgva ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385

oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)
; positions_7nt_m5 versus oligos_6nt_mkv4_m1; m=2/9; ncol2=13; w=0; offset=0; strand=D; shift=8; score=0.887257; --------kcCAGGACCTggs- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 0 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 0 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 0 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349 0

oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)
; positions_7nt_m5 versus oligos_7nt_mkv5_m1; m=3/9; ncol2=16; w=-2; offset=-2; strand=D; shift=6; score=0.832417; ------cttcCAGGACCTGgsa ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848

positions_7nt_m3_rc_shift9 (positions_7nt_m3_rc)
; positions_7nt_m5 versus positions_7nt_m3_rc; m=4/9; ncol2=12; w=0; offset=1; strand=R; shift=9; score=0.770032; ---------ccAGGcCCTGss- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2552 2828 10980 347 439 2007 348 210 518 187 2302 3106 0 c 0 0 0 0 0 0 0 0 0 4706 5486 687 156 403 8072 11679 12218 482 261 3609 4078 0 g 0 0 0 0 0 0 0 0 0 3224 3041 763 12211 11752 640 327 243 422 12257 4775 3562 0 t 0 0 0 0 0 0 0 0 0 2457 1584 509 225 345 2220 585 268 11517 234 2253 2193 0

positions_7nt_m1_shift3 (positions_7nt_m1)
; positions_7nt_m5 versus positions_7nt_m1; m=5/9; ncol2=19; w=-5; offset=-5; strand=D; shift=3; score= 0.6909; ---smcCtgCCAGGACCTggsv ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 1846 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 1888 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 1867 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276 1522

positions_6nt_m1_shift6 (positions_6nt_m1)
; positions_7nt_m5 versus positions_6nt_m1; m=6/9; ncol2=20; w=-2; offset=-2; strand=D; shift=6; score=0.646006; ------cytcCAGGACCTgsca ; cor=; Ncor= a 0 0 0 0 0 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 2894 c 0 0 0 0 0 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 1121 g 0 0 0 0 0 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 1097 t 0 0 0 0 0 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726 1179

positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)
; positions_7nt_m5 versus positions_6nt_m2_rc; m=7/9; ncol2=23; w=-8; offset=-8; strand=R; shift=0; score=0.564019; csggccCtgCCAGGACCTgsss ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 1145 1349 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 1754 1710 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 1596 1699 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005 1491 1228

positions_7nt_m2_rc_shift9 (positions_7nt_m2_rc)
; positions_7nt_m5 versus positions_7nt_m2_rc; m=8/9; ncol2=17; w=0; offset=1; strand=R; shift=9; score=0.54683; ---------smrGGTCCTGGca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1240 1631 1867 334 224 408 118 140 248 217 418 1397 4164 c 0 0 0 0 0 0 0 0 0 2339 2011 484 319 300 402 5824 5800 425 242 417 3903 661 g 0 0 0 0 0 0 0 0 0 1691 1585 3653 5432 5662 406 315 262 409 5586 5236 681 800 t 0 0 0 0 0 0 0 0 0 1126 1169 392 311 210 5180 139 194 5314 351 325 415 771

positions_6nt_m5_shift0 (positions_6nt_m5)
; positions_7nt_m5 versus positions_6nt_m5; m=9/9; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.522745; crGGtCCTGsCAGGACCTgsca ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 472 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 324 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 300 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173 243

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m4_shift2 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m4_shift2 (oligos_6nt_mkv4_m4)
; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=10; shift=2; ncol=12; --ssCGaGCGss ; Alignment reference a 0 0 1314 1246 227 98 4553 337 150 126 1042 1283 c 0 0 3311 3012 7935 266 2076 542 8366 344 3717 2598 g 0 0 2948 3692 492 8329 1423 7753 113 8234 2651 3726 t 0 0 1255 878 174 135 776 196 199 124 1418 1221

oligos_6nt_mkv4_m4_shift2 (oligos_6nt_mkv4_m4)
; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m4; m=1/5; ncol2=10; w=0; offset=0; strand=D; shift=2; score= 1; --ssCGaGCGss ; cor=; Ncor= a 0 0 1314 1246 227 98 4553 337 150 126 1042 1283 c 0 0 3311 3012 7935 266 2076 542 8366 344 3717 2598 g 0 0 2948 3692 492 8329 1423 7753 113 8234 2651 3726 t 0 0 1255 878 174 135 776 196 199 124 1418 1221

oligos_6nt_mkv4_m2_rc_shift2 (oligos_6nt_mkv4_m2_rc)
; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m2_rc; m=2/5; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.918431; --ssCGGGCGss ; cor=; Ncor= a 0 0 1854 1984 103 419 861 783 125 182 1478 1770 c 0 0 4957 4205 12418 1250 2076 1422 12608 350 5378 4048 g 0 0 4448 5645 477 11452 9525 10491 166 12632 4045 5608 t 0 0 1979 1404 240 117 776 542 339 74 2337 1812

oligos_6nt_mkv4_m5_shift2 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m5; m=3/5; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.719479; --ssCGGCCGss ; cor=; Ncor= a 0 0 1945 2220 82 178 542 783 125 227 1515 1606 c 0 0 6097 3697 13241 1894 1423 11188 11739 386 6504 4288 g 0 0 4288 6504 386 11739 11188 1423 1894 13241 3697 6097 t 0 0 1606 1515 227 125 783 542 178 82 2220 1945

oligos_7nt_mkv5_m3_rc_shift0 (oligos_7nt_mkv5_m3_rc)
; oligos_6nt_mkv4_m4 versus oligos_7nt_mkv5_m3_rc; m=4/5; ncol2=12; w=-2; offset=-2; strand=R; shift=0; score=0.608248; sscGaGGGCGss ; cor=; Ncor= a 1185 1138 820 135 4903 159 251 298 206 129 1093 1216 c 2458 2527 4424 387 1656 696 1072 432 7151 219 2805 2242 g 3059 3072 1837 7049 752 6690 6169 6762 176 7219 2757 3233 t 994 959 615 125 385 151 204 204 163 129 1041 1005

positions_6nt_m3_rc_shift2 (positions_6nt_m3_rc)
; oligos_6nt_mkv4_m4 versus positions_6nt_m3_rc; m=5/5; ncol2=13; w=0; offset=0; strand=R; shift=2; score=0.538475; --ssgGGGCGGG ; cor=; Ncor= a 0 0 2460 2408 2383 604 400 411 952 739 507 559 c 0 0 5521 5546 4016 1423 1588 848 14639 912 1568 1430 g 0 0 6287 6707 8309 14301 14391 15153 144 14275 14114 14281 t 0 0 2485 2092 2045 425 374 341 1018 827 564 483

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m3_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)
; oligos_6nt_mkv4_m3; m=0 (reference); ncol1=10; shift=0; ncol=10; ssCGGAGCss ; Alignment reference a 1361 1564 35 61 159 6005 349 191 1002 1137 c 3538 2397 8651 416 828 1813 411 8268 2835 2611 g 2612 3759 117 8324 7574 491 7836 171 3711 3779 t 1325 1116 33 35 275 527 240 206 1288 1309

oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)
; oligos_6nt_mkv4_m3 versus oligos_6nt_mkv4_m3; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; ssCGGAGCss ; cor=; Ncor= a 1361 1564 35 61 159 6005 349 191 1002 1137 c 3538 2397 8651 416 828 1813 411 8268 2835 2611 g 2612 3759 117 8324 7574 491 7836 171 3711 3779 t 1325 1116 33 35 275 527 240 206 1288 1309

One-to-n matrix alignment; reference matrix: positions_6nt_m5_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m5_shift0 (positions_6nt_m5)
; positions_6nt_m5; m=0 (reference); ncol1=24; shift=0; ncol=24; crGGtCCTGsCAGGACCTgscass ; Alignment reference a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 472 257 278 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 324 375 379 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 300 427 411 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173 243 280 271

positions_6nt_m5_shift0 (positions_6nt_m5)
; positions_6nt_m5 versus positions_6nt_m5; m=1/9; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; crGGtCCTGsCAGGACCTgscass ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 472 257 278 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 324 375 379 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 300 427 411 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173 243 280 271

positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)
; positions_6nt_m5 versus positions_6nt_m2_rc; m=2/9; ncol2=23; w=0; offset=0; strand=R; shift=0; score=0.835937; csggccCtgCCAGGACCTgssss- ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 1145 1349 1112 0 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 1754 1710 1838 0 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 1596 1699 1869 0 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005 1491 1228 1167 0

positions_7nt_m1_shift3 (positions_7nt_m1)
; positions_6nt_m5 versus positions_7nt_m1; m=3/9; ncol2=19; w=0; offset=3; strand=D; shift=3; score=0.689035; ---smcCtgCCAGGACCTggsv-- ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 1846 0 0 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 1888 0 0 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 1867 0 0 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276 1522 0 0

positions_6nt_m1_rc_shift3 (positions_6nt_m1_rc)
; positions_6nt_m5 versus positions_6nt_m1_rc; m=4/9; ncol2=20; w=0; offset=3; strand=R; shift=3; score=0.665214; ---sscctgscAGGTCCTGgarg- ; cor=; Ncor= a 0 0 0 1242 1419 1030 779 1179 726 897 970 5208 154 215 949 150 132 190 368 760 2997 2051 1111 0 c 0 0 0 1727 1828 3016 3645 1097 1129 1845 4161 279 151 227 306 5759 5839 360 295 779 1495 1395 1440 0 g 0 0 0 1921 1689 1220 1072 1121 3353 2761 714 532 5837 5666 352 260 160 246 5204 4150 1066 1586 2724 0 t 0 0 0 1401 1355 1025 795 2894 1083 788 446 272 149 183 4684 122 160 5495 424 602 733 1259 1016 0

positions_7nt_m2_shift3 (positions_7nt_m2)
; positions_6nt_m5 versus positions_7nt_m2; m=5/9; ncol2=17; w=0; offset=3; strand=D; shift=3; score=0.591525; ---sccCtgCCAGGACCyks---- ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 0 0 0 0 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 0 0 0 0 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 0 0 0 0 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240 0 0 0 0

oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)
; positions_6nt_m5 versus oligos_7nt_mkv5_m1; m=6/9; ncol2=16; w=0; offset=6; strand=D; shift=6; score=0.555913; ------cttcCAGGACCTGgsa-- ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 0 0 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 0 0 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 0 0 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848 0 0

positions_7nt_m5_shift8 (positions_7nt_m5)
; positions_6nt_m5 versus positions_7nt_m5; m=7/9; ncol2=14; w=0; offset=8; strand=D; shift=8; score=0.522745; --------kcmAGGACCTGgva-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 0 0 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 0 0 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 0 0 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385 0 0

oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)
; positions_6nt_m5 versus oligos_6nt_mkv4_m1; m=8/9; ncol2=13; w=0; offset=8; strand=D; shift=8; score=0.506684; --------kcCAGGACCTggs--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 0 0 0 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 0 0 0 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 0 0 0 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349 0 0 0

positions_7nt_m3_shift8 (positions_7nt_m3)
; positions_6nt_m5 versus positions_7nt_m3; m=9/9; ncol2=12; w=0; offset=8; strand=D; shift=8; score=0.432158; --------ssCAGGgCCTgg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 0 0 0 0 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 0 0 0 0 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 0 0 0 0 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m5_shift0 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=10; shift=0; ncol=10; ssCGGCCGss ; Alignment reference a 1945 2220 82 178 542 783 125 227 1515 1606 c 6097 3697 13241 1894 1423 11188 11739 386 6504 4288 g 4288 6504 386 11739 11188 1423 1894 13241 3697 6097 t 1606 1515 227 125 783 542 178 82 2220 1945
oligos_6nt_mkv4_m5_shift0 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m5; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; ssCGGCCGss ; cor=; Ncor= a 1945 2220 82 178 542 783 125 227 1515 1606 c 6097 3697 13241 1894 1423 11188 11739 386 6504 4288 g 4288 6504 386 11739 11188 1423 1894 13241 3697 6097 t 1606 1515 227 125 783 542 178 82 2220 1945
oligos_6nt_mkv4_m2_shift0 (oligos_6nt_mkv4_m2)				; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m2; m=2/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.849209; ssCGCCCGss ; cor=; Ncor= a 1812 2337 74 339 542 776 117 240 1404 1979 c 5608 4045 12632 166 10491 9525 11452 477 5645 4448 g 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 t 1770 1478 182 125 783 861 419 103 1984 1854
oligos_6nt_mkv4_m4_rc_shift0 (oligos_6nt_mkv4_m4_rc)				; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m4_rc; m=3/3; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.719479; ssCGCtCGss ; cor=; Ncor= a 1221 1418 124 199 196 776 135 174 878 1255 c 3726 2651 8234 113 7753 1423 8329 492 3692 2948 g 2598 3717 344 8366 542 2076 266 7935 3012 3311 t 1283 1042 126 150 337 4553 98 227 1246 1314

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m5_shift0 (oligos_7nt_mkv5_m5)				; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; ssCGCaGGCGss ; Alignment reference a 945 979 198 156 167 3913 103 234 206 209 790 1010 c 2215 1854 5428 361 5411 974 889 551 5646 380 2544 2087 g 2177 2558 423 5574 502 1096 5008 5236 170 5407 2044 2264 t 882 828 170 128 139 236 219 198 197 223 841 858
oligos_7nt_mkv5_m5_shift0 (oligos_7nt_mkv5_m5)				; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m5; m=1/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; ssCGCaGGCGss ; cor=; Ncor= a 945 979 198 156 167 3913 103 234 206 209 790 1010 c 2215 1854 5428 361 5411 974 889 551 5646 380 2544 2087 g 2177 2558 423 5574 502 1096 5008 5236 170 5407 2044 2264 t 882 828 170 128 139 236 219 198 197 223 841 858
oligos_7nt_mkv5_m3_rc_shift0 (oligos_7nt_mkv5_m3_rc)				; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m3_rc; m=2/4; ncol2=12; w=0; offset=0; strand=R; shift=0; score=0.769418; sscGaGGGCGss ; cor=; Ncor= a 1185 1138 820 135 4903 159 251 298 206 129 1093 1216 c 2458 2527 4424 387 1656 696 1072 432 7151 219 2805 2242 g 3059 3072 1837 7049 752 6690 6169 6762 176 7219 2757 3233 t 994 959 615 125 385 151 204 204 163 129 1041 1005
oligos_6nt_mkv4_m2_rc_shift2 (oligos_6nt_mkv4_m2_rc)				; oligos_7nt_mkv5_m5 versus oligos_6nt_mkv4_m2_rc; m=3/4; ncol2=10; w=0; offset=2; strand=R; shift=2; score=0.658413; --ssCGGGCGss ; cor=; Ncor= a 0 0 1854 1984 103 419 861 783 125 182 1478 1770 c 0 0 4957 4205 12418 1250 2076 1422 12608 350 5378 4048 g 0 0 4448 5645 477 11452 9525 10491 166 12632 4045 5608 t 0 0 1979 1404 240 117 776 542 339 74 2337 1812
oligos_7nt_mkv5_m4_rc_shift1 (oligos_7nt_mkv5_m4_rc)				; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m4_rc; m=4/4; ncol2=11; w=0; offset=1; strand=R; shift=1; score=0.646018; -ssGGGGGCGss ; cor=; Ncor= a 0 2424 2937 632 843 1235 809 636 174 145 2074 2645 c 0 5104 5295 1196 1360 1776 1251 891 15640 248 4889 4812 g 0 6435 5241 13733 13295 12363 13627 14212 68 15669 7272 6252 t 0 2234 2724 636 699 823 510 458 315 135 1962 2488

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)				; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=13; shift=8; ncol=21; --------kcCAGGACCTggs ; Alignment reference a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349
oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)				; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m1; m=1/9; ncol2=13; w=0; offset=0; strand=D; shift=8; score= 1; --------kcCAGGACCTggs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349
positions_7nt_m5_shift8 (positions_7nt_m5)				; oligos_6nt_mkv4_m1 versus positions_7nt_m5; m=2/9; ncol2=14; w=0; offset=0; strand=D; shift=8; score=0.887257; --------kcmAGGACCTGgv ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916
positions_7nt_m3_shift8 (positions_7nt_m3)				; oligos_6nt_mkv4_m1 versus positions_7nt_m3; m=3/9; ncol2=12; w=0; offset=0; strand=D; shift=8; score=0.841725; --------ssCAGGgCCTgg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 0 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 0 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 0 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552 0
oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)				; oligos_6nt_mkv4_m1 versus oligos_7nt_mkv5_m1; m=4/9; ncol2=16; w=-2; offset=-2; strand=D; shift=6; score=0.787673; ------cttcCAGGACCTGgs ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404
positions_7nt_m1_shift3 (positions_7nt_m1)				; oligos_6nt_mkv4_m1 versus positions_7nt_m1; m=5/9; ncol2=19; w=-5; offset=-5; strand=D; shift=3; score=0.664578; ---smcCtgCCAGGACCTggs ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276
positions_6nt_m1_shift6 (positions_6nt_m1)				; oligos_6nt_mkv4_m1 versus positions_6nt_m1; m=6/9; ncol2=20; w=-2; offset=-2; strand=D; shift=6; score=0.628237; ------cytcCAGGACCTgsc ; cor=; Ncor= a 0 0 0 0 0 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 c 0 0 0 0 0 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 g 0 0 0 0 0 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 t 0 0 0 0 0 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726
positions_7nt_m2_shift3 (positions_7nt_m2)				; oligos_6nt_mkv4_m1 versus positions_7nt_m2; m=7/9; ncol2=17; w=-5; offset=-5; strand=D; shift=3; score=0.597633; ---sccCtgCCAGGACCyks- ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 0 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 0 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 0 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240 0
positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)				; oligos_6nt_mkv4_m1 versus positions_6nt_m2_rc; m=8/9; ncol2=23; w=-8; offset=-8; strand=R; shift=0; score=0.549665; csggccCtgCCAGGACCTgss ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 1145 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 1754 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 1596 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005 1491
positions_6nt_m5_shift0 (positions_6nt_m5)				; oligos_6nt_mkv4_m1 versus positions_6nt_m5; m=9/9; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.506684; crGGtCCTGsCAGGACCTgsc ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m1_shift1 (positions_6nt_m1)				; positions_6nt_m1; m=0 (reference); ncol1=20; shift=1; ncol=21; -cytcCAGGACCTgscaggss ; Alignment reference a 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 2894 795 1025 1355 1401 c 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 1121 1072 1220 1689 1921 g 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 1097 3645 3016 1828 1727 t 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726 1179 779 1030 1419 1242
positions_6nt_m1_shift1 (positions_6nt_m1)				; positions_6nt_m1 versus positions_6nt_m1; m=1/9; ncol2=20; w=0; offset=0; strand=D; shift=1; score= 1; -cytcCAGGACCTgscaggss ; cor=; Ncor= a 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 2894 795 1025 1355 1401 c 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 1121 1072 1220 1689 1921 g 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 1097 3645 3016 1828 1727 t 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726 1179 779 1030 1419 1242
positions_7nt_m1_rc_shift2 (positions_7nt_m1_rc)				; positions_6nt_m1 versus positions_7nt_m1_rc; m=2/9; ncol2=19; w=0; offset=1; strand=R; shift=2; score=0.823079; --bsccAGGTCCTGGcaGgks ; cor=; Ncor= a 0 0 1522 1276 1252 1223 5819 250 195 881 131 135 205 425 647 1705 4282 565 1348 1405 1774 c 0 0 1867 2064 3196 4462 312 193 266 402 6581 6643 423 339 712 3979 816 706 1477 1610 1858 g 0 0 1888 2152 1562 835 749 6484 6440 398 262 136 260 5720 5196 860 893 5326 3241 2189 2203 t 0 0 1846 1631 1113 603 243 196 222 5442 149 209 6235 639 568 579 1132 526 1057 1919 1288
oligos_7nt_mkv5_m1_shift1 (oligos_7nt_mkv5_m1)				; positions_6nt_m1 versus oligos_7nt_mkv5_m1; m=3/9; ncol2=16; w=0; offset=0; strand=D; shift=1; score=0.778921; -cttcCAGGACCTGgsa---- ; cor=; Ncor= a 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 0 0 0 0 c 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 0 0 0 0 g 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 0 0 0 0 t 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848 0 0 0 0
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_6nt_m1 versus positions_6nt_m2; m=4/9; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.735107; -sssscAGGTCCTGGcaGggc ; cor=; Ncor= a 0 1167 1228 1491 1005 929 4607 175 176 597 110 117 182 292 561 1404 3181 517 1035 852 1067 c 0 1869 1699 1596 1922 3835 385 174 282 365 5512 5571 411 309 771 3220 890 769 1106 1014 2713 g 0 1838 1710 1754 2175 763 736 5483 5361 438 236 157 340 5006 4126 801 1000 4234 2978 2991 1383 t 0 1112 1349 1145 884 459 258 154 167 4586 128 141 5053 379 528 561 915 466 867 1129 823
positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)				; positions_6nt_m1 versus positions_6nt_m5_rc; m=5/9; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.665214; sstgscAGGTCCTGsCAGGaC ; cor=; Ncor= a 271 280 243 173 216 183 928 73 54 165 54 30 40 53 151 162 1090 47 71 896 139 c 411 427 300 325 425 808 111 91 134 122 1110 1252 77 73 701 1032 85 46 139 145 992 g 379 375 324 578 480 186 177 1048 1042 106 109 28 72 1055 342 79 88 1202 1044 147 141 t 278 257 472 263 218 162 123 127 109 946 66 29 1150 158 145 66 76 44 85 151 67
positions_7nt_m5_shift3 (positions_7nt_m5)				; positions_6nt_m1 versus positions_7nt_m5; m=6/9; ncol2=14; w=0; offset=2; strand=D; shift=3; score=0.646006; ---kcmAGGACCTGgva---- ; cor=; Ncor= a 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 0 0 0 0 c 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 0 0 0 0 g 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 0 0 0 0 t 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385 0 0 0 0
positions_7nt_m2_rc_shift4 (positions_7nt_m2_rc)				; positions_6nt_m1 versus positions_7nt_m2_rc; m=7/9; ncol2=17; w=0; offset=3; strand=R; shift=4; score=0.630095; ----smrGGTCCTGGcaGggs ; cor=; Ncor= a 0 0 0 0 1240 1631 1867 334 224 408 118 140 248 217 418 1397 4164 316 959 1268 1481 c 0 0 0 0 2339 2011 484 319 300 402 5824 5800 425 242 417 3903 661 424 1224 1420 1684 g 0 0 0 0 1691 1585 3653 5432 5662 406 315 262 409 5586 5236 681 800 5368 3524 2142 2121 t 0 0 0 0 1126 1169 392 311 210 5180 139 194 5314 351 325 415 771 288 689 1566 1110
oligos_6nt_mkv4_m1_shift3 (oligos_6nt_mkv4_m1)				; positions_6nt_m1 versus oligos_6nt_mkv4_m1; m=8/9; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.628237; ---kcCAGGACCTggs----- ; cor=; Ncor= a 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 0 0 0 0 0 c 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 0 0 0 0 0 g 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 0 0 0 0 0 t 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349 0 0 0 0 0
positions_7nt_m3_shift3 (positions_7nt_m3)				; positions_6nt_m1 versus positions_7nt_m3; m=9/9; ncol2=12; w=0; offset=2; strand=D; shift=3; score=0.534354; ---ssCAGGgCCTgg------ ; cor=; Ncor= a 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 0 0 0 0 0 0 c 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 0 0 0 0 0 0 g 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 0 0 0 0 0 0 t 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m2_shift3 (oligos_6nt_mkv4_m2)				; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCGCCCGss ; Alignment reference a 0 0 0 1812 2337 74 339 542 776 117 240 1404 1979 c 0 0 0 5608 4045 12632 166 10491 9525 11452 477 5645 4448 g 0 0 0 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 t 0 0 0 1770 1478 182 125 783 861 419 103 1984 1854
oligos_6nt_mkv4_m2_shift3 (oligos_6nt_mkv4_m2)				; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m2; m=1/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score= 1; ---ssCGCCCGss ; cor=; Ncor= a 0 0 0 1812 2337 74 339 542 776 117 240 1404 1979 c 0 0 0 5608 4045 12632 166 10491 9525 11452 477 5645 4448 g 0 0 0 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 t 0 0 0 1770 1478 182 125 783 861 419 103 1984 1854
oligos_6nt_mkv4_m4_rc_shift3 (oligos_6nt_mkv4_m4_rc)				; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m4_rc; m=2/7; ncol2=10; w=0; offset=0; strand=R; shift=3; score=0.918431; ---ssCGCtCGss ; cor=; Ncor= a 0 0 0 1221 1418 124 199 196 776 135 174 878 1255 c 0 0 0 3726 2651 8234 113 7753 1423 8329 492 3692 2948 g 0 0 0 2598 3717 344 8366 542 2076 266 7935 3012 3311 t 0 0 0 1283 1042 126 150 337 4553 98 227 1246 1314
oligos_6nt_mkv4_m5_shift3 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m5; m=3/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.849209; ---ssCGGCCGss ; cor=; Ncor= a 0 0 0 1945 2220 82 178 542 783 125 227 1515 1606 c 0 0 0 6097 3697 13241 1894 1423 11188 11739 386 6504 4288 g 0 0 0 4288 6504 386 11739 11188 1423 1894 13241 3697 6097 t 0 0 0 1606 1515 227 125 783 542 178 82 2220 1945
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)				; oligos_6nt_mkv4_m2 versus oligos_7nt_mkv5_m4; m=4/7; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.694721; ---ssCGCCCCCs ; cor=; Ncor= a 0 0 0 2488 1962 135 315 458 510 823 699 636 2724 c 0 0 0 6252 7272 15669 68 14212 13627 12363 13295 13733 5241 g 0 0 0 4812 4889 248 15640 891 1251 1776 1360 1196 5295 t 0 0 0 2645 2074 145 174 636 809 1235 843 632 2937
oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)				; oligos_6nt_mkv4_m2 versus oligos_7nt_mkv5_m3; m=5/7; ncol2=12; w=0; offset=0; strand=D; shift=3; score=0.67743; ---ssCGCCCtCg ; cor=; Ncor= a 0 0 0 1005 1041 129 163 204 204 151 385 125 615 c 0 0 0 3233 2757 7219 176 6762 6169 6690 752 7049 1837 g 0 0 0 2242 2805 219 7151 432 1072 696 1656 387 4424 t 0 0 0 1216 1093 129 206 298 251 159 4903 135 820
oligos_7nt_mkv5_m5_rc_shift3 (oligos_7nt_mkv5_m5_rc)				; oligos_6nt_mkv4_m2 versus oligos_7nt_mkv5_m5_rc; m=6/7; ncol2=12; w=0; offset=0; strand=R; shift=3; score=0.658413; ---ssCGCCtGCG ; cor=; Ncor= a 0 0 0 858 841 223 197 198 219 236 139 128 170 c 0 0 0 2264 2044 5407 170 5236 5008 1096 502 5574 423 g 0 0 0 2087 2544 380 5646 551 889 974 5411 361 5428 t 0 0 0 1010 790 209 206 234 103 3913 167 156 198
positions_6nt_m3_shift0 (positions_6nt_m3)				; oligos_6nt_mkv4_m2 versus positions_6nt_m3; m=7/7; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.610436; ssCCCCGCCCcss ; cor=; Ncor= a 2602 2354 665 483 564 827 1018 341 374 425 2045 2092 2485 c 6204 5886 13286 14281 14114 14275 144 15153 14391 14301 8309 6707 6287 g 5346 5474 1902 1430 1568 912 14639 848 1588 1423 4016 5546 5521 t 2601 3039 900 559 507 739 952 411 400 604 2383 2408 2460

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m1_shift3 (positions_7nt_m1)				; positions_7nt_m1; m=0 (reference); ncol1=19; shift=3; ncol=22; ---smcCtgCCAGGACCTggsv ; Alignment reference a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 1846 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 1888 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 1867 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276 1522
positions_7nt_m1_shift3 (positions_7nt_m1)				; positions_7nt_m1 versus positions_7nt_m1; m=1/10; ncol2=19; w=0; offset=0; strand=D; shift=3; score= 1; ---smcCtgCCAGGACCTggsv ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 1846 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 1888 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 1867 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276 1522
positions_7nt_m2_shift3 (positions_7nt_m2)				; positions_7nt_m1 versus positions_7nt_m2; m=2/10; ncol2=17; w=0; offset=0; strand=D; shift=3; score=0.835373; ---sccCtgCCAGGACCyks-- ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 0 0 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 0 0 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 0 0 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240 0 0
positions_6nt_m1_rc_shift3 (positions_6nt_m1_rc)				; positions_7nt_m1 versus positions_6nt_m1_rc; m=3/10; ncol2=20; w=0; offset=0; strand=R; shift=3; score=0.823079; ---sscctgscAGGTCCTGgar ; cor=; Ncor= a 0 0 0 1242 1419 1030 779 1179 726 897 970 5208 154 215 949 150 132 190 368 760 2997 2051 c 0 0 0 1727 1828 3016 3645 1097 1129 1845 4161 279 151 227 306 5759 5839 360 295 779 1495 1395 g 0 0 0 1921 1689 1220 1072 1121 3353 2761 714 532 5837 5666 352 260 160 246 5204 4150 1066 1586 t 0 0 0 1401 1355 1025 795 2894 1083 788 446 272 149 183 4684 122 160 5495 424 602 733 1259
positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)				; positions_7nt_m1 versus positions_6nt_m2_rc; m=4/10; ncol2=23; w=-3; offset=-3; strand=R; shift=0; score=0.812875; csggccCtgCCAGGACCTgsss ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 1145 1349 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 1754 1710 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 1596 1699 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005 1491 1228
oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)				; positions_7nt_m1 versus oligos_7nt_mkv5_m1; m=5/10; ncol2=16; w=0; offset=3; strand=D; shift=6; score=0.804096; ------cttcCAGGACCTGgsa ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848
positions_7nt_m5_shift8 (positions_7nt_m5)				; positions_7nt_m1 versus positions_7nt_m5; m=6/10; ncol2=14; w=0; offset=5; strand=D; shift=8; score= 0.6909; --------kcmAGGACCTGgva ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385
positions_6nt_m5_shift0 (positions_6nt_m5)				; positions_7nt_m1 versus positions_6nt_m5; m=7/10; ncol2=24; w=-3; offset=-3; strand=D; shift=0; score=0.689035; crGGtCCTGsCAGGACCTgsca ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 472 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 324 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 300 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173 243
oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)				; positions_7nt_m1 versus oligos_6nt_mkv4_m1; m=8/10; ncol2=13; w=0; offset=5; strand=D; shift=8; score=0.664578; --------kcCAGGACCTggs- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 0 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 0 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 0 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349 0
positions_7nt_m3_shift8 (positions_7nt_m3)				; positions_7nt_m1 versus positions_7nt_m3; m=9/10; ncol2=12; w=0; offset=5; strand=D; shift=8; score=0.560124; --------ssCAGGgCCTgg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 0 0 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 0 0 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 0 0 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552 0 0
positions_7nt_m4_rc_shift4 (positions_7nt_m4_rc)				; positions_7nt_m1 versus positions_7nt_m4_rc; m=10/10; ncol2=11; w=0; offset=1; strand=R; shift=4; score=0.445044; ----yaCTTCCAGga------- ; cor=; Ncor= a 0 0 0 0 2085 2451 423 337 400 612 110 7674 106 2028 2989 0 0 0 0 0 0 0 c 0 0 0 0 2647 2275 8397 244 244 8142 8578 668 280 2152 2186 0 0 0 0 0 0 0 g 0 0 0 0 2091 2274 244 394 234 289 204 602 8544 3123 1778 0 0 0 0 0 0 0 t 0 0 0 0 2405 2228 164 8253 8350 185 336 284 298 1925 2275 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m3_shift8 (positions_7nt_m3)				; positions_7nt_m3; m=0 (reference); ncol1=12; shift=8; ncol=20; --------ssCAGGgCCTgg ; Alignment reference a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552
positions_7nt_m3_shift8 (positions_7nt_m3)				; positions_7nt_m3 versus positions_7nt_m3; m=1/9; ncol2=12; w=0; offset=0; strand=D; shift=8; score= 1; --------ssCAGGgCCTgg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552
oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)				; positions_7nt_m3 versus oligos_6nt_mkv4_m1; m=2/9; ncol2=13; w=0; offset=0; strand=D; shift=8; score=0.841725; --------kcCAGGACCTgg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247
positions_7nt_m5_rc_shift7 (positions_7nt_m5_rc)				; positions_7nt_m3 versus positions_7nt_m5_rc; m=3/9; ncol2=14; w=-1; offset=-1; strand=R; shift=7; score=0.770032; -------tbcCAGGTCCTkg ; cor=; Ncor= a 0 0 0 0 0 0 0 2385 1916 1723 1469 9648 223 244 1584 208 194 161 1310 2118 c 0 0 0 0 0 0 0 2575 2925 5152 7595 220 218 294 262 9947 10044 402 1520 2532 g 0 0 0 0 0 0 0 2329 2871 1922 792 462 9851 9696 285 225 87 208 3982 3684 t 0 0 0 0 0 0 0 3279 2856 1771 712 238 276 334 8437 188 243 9797 3756 2234
oligos_7nt_mkv5_m1_rc_shift7 (oligos_7nt_mkv5_m1_rc)				; positions_7nt_m3 versus oligos_7nt_mkv5_m1_rc; m=4/9; ncol2=16; w=-1; offset=-1; strand=R; shift=7; score=0.658067; -------tscCAGGTCCTGg ; cor=; Ncor= a 0 0 0 0 0 0 0 1848 1404 1188 1102 6949 210 235 1052 154 204 213 680 884 c 0 0 0 0 0 0 0 1950 2307 4222 5632 240 204 260 363 7334 7495 398 489 955 g 0 0 0 0 0 0 0 1921 2401 1459 659 575 7377 7272 325 314 126 231 6018 5395 t 0 0 0 0 0 0 0 2253 1860 1103 579 208 181 205 6232 170 147 7130 785 738
positions_7nt_m2_shift3 (positions_7nt_m2)				; positions_7nt_m3 versus positions_7nt_m2; m=5/9; ncol2=17; w=-5; offset=-5; strand=D; shift=3; score=0.564986; ---sccCtgCCAGGACCyks ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240
positions_7nt_m1_shift3 (positions_7nt_m1)				; positions_7nt_m3 versus positions_7nt_m1; m=6/9; ncol2=19; w=-5; offset=-5; strand=D; shift=3; score=0.560124; ---smcCtgCCAGGACCTgg ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252
positions_6nt_m1_shift6 (positions_6nt_m1)				; positions_7nt_m3 versus positions_6nt_m1; m=7/9; ncol2=20; w=-2; offset=-2; strand=D; shift=6; score=0.534354; ------cytcCAGGACCTgs ; cor=; Ncor= a 0 0 0 0 0 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 c 0 0 0 0 0 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 g 0 0 0 0 0 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 t 0 0 0 0 0 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897
positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)				; positions_7nt_m3 versus positions_6nt_m2_rc; m=8/9; ncol2=23; w=-8; offset=-8; strand=R; shift=0; score=0.46389; csggccCtgCCAGGACCTgs ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005
positions_6nt_m5_shift0 (positions_6nt_m5)				; positions_7nt_m3 versus positions_6nt_m5; m=9/9; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.432158; crGGtCCTGsCAGGACCTgs ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)				; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=16; shift=6; ncol=22; ------cttcCAGGACCTGgsa ; Alignment reference a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848
oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)				; oligos_7nt_mkv5_m1 versus oligos_7nt_mkv5_m1; m=1/9; ncol2=16; w=0; offset=0; strand=D; shift=6; score= 1; ------cttcCAGGACCTGgsa ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848
positions_7nt_m5_shift8 (positions_7nt_m5)				; oligos_7nt_mkv5_m1 versus positions_7nt_m5; m=2/9; ncol2=14; w=0; offset=2; strand=D; shift=8; score=0.832417; --------kcmAGGACCTGgva ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385
positions_7nt_m1_shift3 (positions_7nt_m1)				; oligos_7nt_mkv5_m1 versus positions_7nt_m1; m=3/9; ncol2=19; w=-3; offset=-3; strand=D; shift=3; score=0.804096; ---smcCtgCCAGGACCTggsv ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 1846 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 1888 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 1867 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276 1522
oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)				; oligos_7nt_mkv5_m1 versus oligos_6nt_mkv4_m1; m=4/9; ncol2=13; w=0; offset=2; strand=D; shift=8; score=0.787673; --------kcCAGGACCTggs- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 0 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 0 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 0 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349 0
positions_6nt_m1_shift6 (positions_6nt_m1)				; oligos_7nt_mkv5_m1 versus positions_6nt_m1; m=5/9; ncol2=20; w=0; offset=0; strand=D; shift=6; score=0.778921; ------cytcCAGGACCTgsca ; cor=; Ncor= a 0 0 0 0 0 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 2894 c 0 0 0 0 0 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 1121 g 0 0 0 0 0 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 1097 t 0 0 0 0 0 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726 1179
positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)				; oligos_7nt_mkv5_m1 versus positions_6nt_m2_rc; m=6/9; ncol2=23; w=-6; offset=-6; strand=R; shift=0; score=0.662466; csggccCtgCCAGGACCTgsss ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 1145 1349 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 1754 1710 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 1596 1699 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005 1491 1228
positions_7nt_m3_rc_shift9 (positions_7nt_m3_rc)				; oligos_7nt_mkv5_m1 versus positions_7nt_m3_rc; m=7/9; ncol2=12; w=0; offset=3; strand=R; shift=9; score=0.658067; ---------ccAGGcCCTGss- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2552 2828 10980 347 439 2007 348 210 518 187 2302 3106 0 c 0 0 0 0 0 0 0 0 0 4706 5486 687 156 403 8072 11679 12218 482 261 3609 4078 0 g 0 0 0 0 0 0 0 0 0 3224 3041 763 12211 11752 640 327 243 422 12257 4775 3562 0 t 0 0 0 0 0 0 0 0 0 2457 1584 509 225 345 2220 585 268 11517 234 2253 2193 0
positions_7nt_m2_shift3 (positions_7nt_m2)				; oligos_7nt_mkv5_m1 versus positions_7nt_m2; m=8/9; ncol2=17; w=-3; offset=-3; strand=D; shift=3; score=0.62656; ---sccCtgCCAGGACCyks-- ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 0 0 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 0 0 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 0 0 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240 0 0
positions_6nt_m5_shift0 (positions_6nt_m5)				; oligos_7nt_mkv5_m1 versus positions_6nt_m5; m=9/9; ncol2=24; w=-6; offset=-6; strand=D; shift=0; score=0.555913; crGGtCCTGsCAGGACCTgsca ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 472 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 324 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 300 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173 243

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m4_shift7 (positions_7nt_m4)				; positions_7nt_m4; m=0 (reference); ncol1=11; shift=7; ncol=18; -------tcCTGGAAGtr ; Alignment reference a 0 0 0 0 0 0 0 2275 1925 298 284 336 185 8350 8253 164 2228 2405 c 0 0 0 0 0 0 0 1778 3123 8544 602 204 289 234 394 244 2274 2091 g 0 0 0 0 0 0 0 2186 2152 280 668 8578 8142 244 244 8397 2275 2647 t 0 0 0 0 0 0 0 2989 2028 106 7674 110 612 400 337 423 2451 2085
positions_7nt_m4_shift7 (positions_7nt_m4)				; positions_7nt_m4 versus positions_7nt_m4; m=1/4; ncol2=11; w=0; offset=0; strand=D; shift=7; score= 1; -------tcCTGGAAGtr ; cor=; Ncor= a 0 0 0 0 0 0 0 2275 1925 298 284 336 185 8350 8253 164 2228 2405 c 0 0 0 0 0 0 0 1778 3123 8544 602 204 289 234 394 244 2274 2091 g 0 0 0 0 0 0 0 2186 2152 280 668 8578 8142 244 244 8397 2275 2647 t 0 0 0 0 0 0 0 2989 2028 106 7674 110 612 400 337 423 2451 2085
positions_6nt_m4_rc_shift8 (positions_6nt_m4_rc)				; positions_7nt_m4 versus positions_6nt_m4_rc; m=2/4; ncol2=10; w=0; offset=1; strand=R; shift=8; score=0.863331; --------ccTGGAAGgr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1184 1175 0 18 0 6166 5998 7 1561 1595 c 0 0 0 0 0 0 0 0 2396 2656 87 45 4 6 238 60 1388 1320 g 0 0 0 0 0 0 0 0 1280 1411 6 6222 6135 9 13 6196 2076 1852 t 0 0 0 0 0 0 0 0 1425 1043 6192 0 146 104 36 22 1260 1518
positions_7nt_m2_rc_shift2 (positions_7nt_m2_rc)				; positions_7nt_m4 versus positions_7nt_m2_rc; m=3/4; ncol2=17; w=-5; offset=-5; strand=R; shift=2; score=0.49911; --smrGGTCCTGGcaGgg ; cor=; Ncor= a 0 0 1240 1631 1867 334 224 408 118 140 248 217 418 1397 4164 316 959 1268 c 0 0 2339 2011 484 319 300 402 5824 5800 425 242 417 3903 661 424 1224 1420 g 0 0 1691 1585 3653 5432 5662 406 315 262 409 5586 5236 681 800 5368 3524 2142 t 0 0 1126 1169 392 311 210 5180 139 194 5314 351 325 415 771 288 689 1566
positions_7nt_m1_rc_shift0 (positions_7nt_m1_rc)				; positions_7nt_m4 versus positions_7nt_m1_rc; m=4/4; ncol2=19; w=-7; offset=-7; strand=R; shift=0; score=0.445044; bsccAGGTCCTGGcaGgk ; cor=; Ncor= a 1522 1276 1252 1223 5819 250 195 881 131 135 205 425 647 1705 4282 565 1348 1405 c 1867 2064 3196 4462 312 193 266 402 6581 6643 423 339 712 3979 816 706 1477 1610 g 1888 2152 1562 835 749 6484 6440 398 262 136 260 5720 5196 860 893 5326 3241 2189 t 1846 1631 1113 603 243 196 222 5442 149 209 6235 639 568 579 1132 526 1057 1919

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m2_shift3 (positions_7nt_m2)				; positions_7nt_m2; m=0 (reference); ncol1=17; shift=3; ncol=20; ---sccCtgCCAGGACCyks ; Alignment reference a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240
positions_7nt_m2_shift3 (positions_7nt_m2)				; positions_7nt_m2 versus positions_7nt_m2; m=1/11; ncol2=17; w=0; offset=0; strand=D; shift=3; score= 1; ---sccCtgCCAGGACCyks ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240
positions_7nt_m1_shift3 (positions_7nt_m1)				; positions_7nt_m2 versus positions_7nt_m1; m=2/11; ncol2=19; w=0; offset=0; strand=D; shift=3; score=0.835373; ---smcCtgCCAGGACCTgg ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252
positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)				; positions_7nt_m2 versus positions_6nt_m2_rc; m=3/11; ncol2=23; w=-3; offset=-3; strand=R; shift=0; score=0.685271; csggccCtgCCAGGACCTgs ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005
positions_6nt_m1_rc_shift3 (positions_6nt_m1_rc)				; positions_7nt_m2 versus positions_6nt_m1_rc; m=4/11; ncol2=20; w=0; offset=0; strand=R; shift=3; score=0.630095; ---sscctgscAGGTCCTGg ; cor=; Ncor= a 0 0 0 1242 1419 1030 779 1179 726 897 970 5208 154 215 949 150 132 190 368 760 c 0 0 0 1727 1828 3016 3645 1097 1129 1845 4161 279 151 227 306 5759 5839 360 295 779 g 0 0 0 1921 1689 1220 1072 1121 3353 2761 714 532 5837 5666 352 260 160 246 5204 4150 t 0 0 0 1401 1355 1025 795 2894 1083 788 446 272 149 183 4684 122 160 5495 424 602
oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)				; positions_7nt_m2 versus oligos_7nt_mkv5_m1; m=5/11; ncol2=16; w=0; offset=3; strand=D; shift=6; score=0.62656; ------cttcCAGGACCTGg ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188
oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)				; positions_7nt_m2 versus oligos_6nt_mkv4_m1; m=6/11; ncol2=13; w=0; offset=5; strand=D; shift=8; score=0.597633; --------kcCAGGACCTgg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247
positions_6nt_m5_shift0 (positions_6nt_m5)				; positions_7nt_m2 versus positions_6nt_m5; m=7/11; ncol2=24; w=-3; offset=-3; strand=D; shift=0; score=0.591525; crGGtCCTGsCAGGACCTgs ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216
positions_7nt_m3_shift8 (positions_7nt_m3)				; positions_7nt_m2 versus positions_7nt_m3; m=8/11; ncol2=12; w=0; offset=5; strand=D; shift=8; score=0.564986; --------ssCAGGgCCTgg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552
positions_7nt_m5_rc_shift7 (positions_7nt_m5_rc)				; positions_7nt_m2 versus positions_7nt_m5_rc; m=9/11; ncol2=14; w=0; offset=4; strand=R; shift=7; score=0.54683; -------tbcCAGGTCCTkg ; cor=; Ncor= a 0 0 0 0 0 0 0 2385 1916 1723 1469 9648 223 244 1584 208 194 161 1310 2118 c 0 0 0 0 0 0 0 2575 2925 5152 7595 220 218 294 262 9947 10044 402 1520 2532 g 0 0 0 0 0 0 0 2329 2871 1922 792 462 9851 9696 285 225 87 208 3982 3684 t 0 0 0 0 0 0 0 3279 2856 1771 712 238 276 334 8437 188 243 9797 3756 2234
positions_7nt_m4_rc_shift4 (positions_7nt_m4_rc)				; positions_7nt_m2 versus positions_7nt_m4_rc; m=10/11; ncol2=11; w=0; offset=1; strand=R; shift=4; score=0.49911; ----yaCTTCCAGga----- ; cor=; Ncor= a 0 0 0 0 2085 2451 423 337 400 612 110 7674 106 2028 2989 0 0 0 0 0 c 0 0 0 0 2647 2275 8397 244 244 8142 8578 668 280 2152 2186 0 0 0 0 0 g 0 0 0 0 2091 2274 244 394 234 289 204 602 8544 3123 1778 0 0 0 0 0 t 0 0 0 0 2405 2228 164 8253 8350 185 336 284 298 1925 2275 0 0 0 0 0
positions_6nt_m4_shift4 (positions_6nt_m4)				; positions_7nt_m2 versus positions_6nt_m4; m=11/11; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.443759; ----ycCTTCCAgg------ ; cor=; Ncor= a 0 0 0 0 1518 1260 22 36 104 146 0 6192 1043 1425 0 0 0 0 0 0 c 0 0 0 0 1852 2076 6196 13 9 6135 6222 6 1411 1280 0 0 0 0 0 0 g 0 0 0 0 1320 1388 60 238 6 4 45 87 2656 2396 0 0 0 0 0 0 t 0 0 0 0 1595 1561 7 5998 6166 0 18 0 1175 1184 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m3_shift0 (positions_6nt_m3)				; positions_6nt_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; ssCCCCGCCCcss ; Alignment reference a 2602 2354 665 483 564 827 1018 341 374 425 2045 2092 2485 c 6204 5886 13286 14281 14114 14275 144 15153 14391 14301 8309 6707 6287 g 5346 5474 1902 1430 1568 912 14639 848 1588 1423 4016 5546 5521 t 2601 3039 900 559 507 739 952 411 400 604 2383 2408 2460
positions_6nt_m3_shift0 (positions_6nt_m3)				; positions_6nt_m3 versus positions_6nt_m3; m=1/5; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; ssCCCCGCCCcss ; cor=; Ncor= a 2602 2354 665 483 564 827 1018 341 374 425 2045 2092 2485 c 6204 5886 13286 14281 14114 14275 144 15153 14391 14301 8309 6707 6287 g 5346 5474 1902 1430 1568 912 14639 848 1588 1423 4016 5546 5521 t 2601 3039 900 559 507 739 952 411 400 604 2383 2408 2460
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)				; positions_6nt_m3 versus oligos_7nt_mkv5_m4; m=2/5; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.619899; ---ssCGCCCCCs ; cor=; Ncor= a 0 0 0 2488 1962 135 315 458 510 823 699 636 2724 c 0 0 0 6252 7272 15669 68 14212 13627 12363 13295 13733 5241 g 0 0 0 4812 4889 248 15640 891 1251 1776 1360 1196 5295 t 0 0 0 2645 2074 145 174 636 809 1235 843 632 2937
oligos_6nt_mkv4_m2_shift3 (oligos_6nt_mkv4_m2)				; positions_6nt_m3 versus oligos_6nt_mkv4_m2; m=3/5; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.610436; ---ssCGCCCGss ; cor=; Ncor= a 0 0 0 1812 2337 74 339 542 776 117 240 1404 1979 c 0 0 0 5608 4045 12632 166 10491 9525 11452 477 5645 4448 g 0 0 0 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 t 0 0 0 1770 1478 182 125 783 861 419 103 1984 1854
oligos_6nt_mkv4_m4_rc_shift3 (oligos_6nt_mkv4_m4_rc)				; positions_6nt_m3 versus oligos_6nt_mkv4_m4_rc; m=4/5; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.538475; ---ssCGCtCGss ; cor=; Ncor= a 0 0 0 1221 1418 124 199 196 776 135 174 878 1255 c 0 0 0 3726 2651 8234 113 7753 1423 8329 492 3692 2948 g 0 0 0 2598 3717 344 8366 542 2076 266 7935 3012 3311 t 0 0 0 1283 1042 126 150 337 4553 98 227 1246 1314
oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)				; positions_6nt_m3 versus oligos_7nt_mkv5_m3; m=5/5; ncol2=12; w=0; offset=3; strand=D; shift=3; score=0.535069; ---ssCGCCCtCg ; cor=; Ncor= a 0 0 0 1005 1041 129 163 204 204 151 385 125 615 c 0 0 0 3233 2757 7219 176 6762 6169 6690 752 7049 1837 g 0 0 0 2242 2805 219 7151 432 1072 696 1656 387 4424 t 0 0 0 1216 1093 129 206 298 251 159 4903 135 820

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m4_shift1 (positions_6nt_m4)				; positions_6nt_m4; m=0 (reference); ncol1=10; shift=1; ncol=11; -ycCTTCCAgg ; Alignment reference a 0 1518 1260 22 36 104 146 0 6192 1043 1425 c 0 1852 2076 6196 13 9 6135 6222 6 1411 1280 g 0 1320 1388 60 238 6 4 45 87 2656 2396 t 0 1595 1561 7 5998 6166 0 18 0 1175 1184
positions_6nt_m4_shift1 (positions_6nt_m4)				; positions_6nt_m4 versus positions_6nt_m4; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 1; -ycCTTCCAgg ; cor=; Ncor= a 0 1518 1260 22 36 104 146 0 6192 1043 1425 c 0 1852 2076 6196 13 9 6135 6222 6 1411 1280 g 0 1320 1388 60 238 6 4 45 87 2656 2396 t 0 1595 1561 7 5998 6166 0 18 0 1175 1184
positions_7nt_m4_rc_shift1 (positions_7nt_m4_rc)				; positions_6nt_m4 versus positions_7nt_m4_rc; m=2/3; ncol2=11; w=0; offset=0; strand=R; shift=1; score=0.863331; -yaCTTCCAGg ; cor=; Ncor= a 0 2085 2451 423 337 400 612 110 7674 106 2028 c 0 2647 2275 8397 244 244 8142 8578 668 280 2152 g 0 2091 2274 244 394 234 289 204 602 8544 3123 t 0 2405 2228 164 8253 8350 185 336 284 298 1925
positions_7nt_m2_shift0 (positions_7nt_m2)				; positions_6nt_m4 versus positions_7nt_m2; m=3/3; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.443759; sccCtgCCAGG ; cor=; Ncor= a 1110 1566 689 288 771 415 325 351 5314 194 139 c 2121 2142 3524 5368 800 681 5236 5586 409 262 315 g 1684 1420 1224 424 661 3903 417 242 425 5800 5824 t 1481 1268 959 316 4164 1397 418 217 248 140 118

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_6nt_m2; m=0 (reference); ncol1=23; shift=1; ncol=24; -sssscAGGTCCTGGcaGggccsg ; Alignment reference a 0 1167 1228 1491 1005 929 4607 175 176 597 110 117 182 292 561 1404 3181 517 1035 852 1067 1274 1349 1335 c 0 1869 1699 1596 1922 3835 385 174 282 365 5512 5571 411 309 771 3220 890 769 1106 1014 2713 2636 1649 1487 g 0 1838 1710 1754 2175 763 736 5483 5361 438 236 157 340 5006 4126 801 1000 4234 2978 2991 1383 1200 1789 1888 t 0 1112 1349 1145 884 459 258 154 167 4586 128 141 5053 379 528 561 915 466 867 1129 823 876 1199 1276
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_6nt_m2 versus positions_6nt_m2; m=1/9; ncol2=23; w=0; offset=0; strand=D; shift=1; score= 1; -sssscAGGTCCTGGcaGggccsg ; cor=; Ncor= a 0 1167 1228 1491 1005 929 4607 175 176 597 110 117 182 292 561 1404 3181 517 1035 852 1067 1274 1349 1335 c 0 1869 1699 1596 1922 3835 385 174 282 365 5512 5571 411 309 771 3220 890 769 1106 1014 2713 2636 1649 1487 g 0 1838 1710 1754 2175 763 736 5483 5361 438 236 157 340 5006 4126 801 1000 4234 2978 2991 1383 1200 1789 1888 t 0 1112 1349 1145 884 459 258 154 167 4586 128 141 5053 379 528 561 915 466 867 1129 823 876 1199 1276
positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)				; positions_6nt_m2 versus positions_6nt_m5_rc; m=2/9; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.835937; sstgscAGGTCCTGsCAGGaCCyg ; cor=; Ncor= a 271 280 243 173 216 183 928 73 54 165 54 30 40 53 151 162 1090 47 71 896 139 151 254 270 c 411 427 300 325 425 808 111 91 134 122 1110 1252 77 73 701 1032 85 46 139 145 992 978 417 301 g 379 375 324 578 480 186 177 1048 1042 106 109 28 72 1055 342 79 88 1202 1044 147 141 95 258 446 t 278 257 472 263 218 162 123 127 109 946 66 29 1150 158 145 66 76 44 85 151 67 115 410 322
positions_7nt_m1_rc_shift2 (positions_7nt_m1_rc)				; positions_6nt_m2 versus positions_7nt_m1_rc; m=3/9; ncol2=19; w=0; offset=1; strand=R; shift=2; score=0.812875; --bsccAGGTCCTGGcaGgks--- ; cor=; Ncor= a 0 0 1522 1276 1252 1223 5819 250 195 881 131 135 205 425 647 1705 4282 565 1348 1405 1774 0 0 0 c 0 0 1867 2064 3196 4462 312 193 266 402 6581 6643 423 339 712 3979 816 706 1477 1610 1858 0 0 0 g 0 0 1888 2152 1562 835 749 6484 6440 398 262 136 260 5720 5196 860 893 5326 3241 2189 2203 0 0 0 t 0 0 1846 1631 1113 603 243 196 222 5442 149 209 6235 639 568 579 1132 526 1057 1919 1288 0 0 0
positions_6nt_m1_shift1 (positions_6nt_m1)				; positions_6nt_m2 versus positions_6nt_m1; m=4/9; ncol2=20; w=0; offset=0; strand=D; shift=1; score=0.735107; -cytcCAGGACCTgscaggss--- ; cor=; Ncor= a 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 2894 795 1025 1355 1401 0 0 0 c 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 1121 1072 1220 1689 1921 0 0 0 g 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 1097 3645 3016 1828 1727 0 0 0 t 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726 1179 779 1030 1419 1242 0 0 0
positions_7nt_m2_rc_shift4 (positions_7nt_m2_rc)				; positions_6nt_m2 versus positions_7nt_m2_rc; m=5/9; ncol2=17; w=0; offset=3; strand=R; shift=4; score=0.685271; ----smrGGTCCTGGcaGggs--- ; cor=; Ncor= a 0 0 0 0 1240 1631 1867 334 224 408 118 140 248 217 418 1397 4164 316 959 1268 1481 0 0 0 c 0 0 0 0 2339 2011 484 319 300 402 5824 5800 425 242 417 3903 661 424 1224 1420 1684 0 0 0 g 0 0 0 0 1691 1585 3653 5432 5662 406 315 262 409 5586 5236 681 800 5368 3524 2142 2121 0 0 0 t 0 0 0 0 1126 1169 392 311 210 5180 139 194 5314 351 325 415 771 288 689 1566 1110 0 0 0
oligos_7nt_mkv5_m1_rc_shift2 (oligos_7nt_mkv5_m1_rc)				; positions_6nt_m2 versus oligos_7nt_mkv5_m1_rc; m=6/9; ncol2=16; w=0; offset=1; strand=R; shift=2; score=0.662466; --tscCAGGTCCTGgaag------ ; cor=; Ncor= a 0 0 1848 1404 1188 1102 6949 210 235 1052 154 204 213 680 884 4433 2844 1374 0 0 0 0 0 0 c 0 0 1950 2307 4222 5632 240 204 260 363 7334 7495 398 489 955 1617 1591 1843 0 0 0 0 0 0 g 0 0 1921 2401 1459 659 575 7377 7272 325 314 126 231 6018 5395 1057 1973 3521 0 0 0 0 0 0 t 0 0 2253 1860 1103 579 208 181 205 6232 170 147 7130 785 738 865 1564 1234 0 0 0 0 0 0
positions_7nt_m5_rc_shift2 (positions_7nt_m5_rc)				; positions_6nt_m2 versus positions_7nt_m5_rc; m=7/9; ncol2=14; w=0; offset=1; strand=R; shift=2; score=0.564019; --tbcCAGGTCCTkgm-------- ; cor=; Ncor= a 0 0 2385 1916 1723 1469 9648 223 244 1584 208 194 161 1310 2118 3013 0 0 0 0 0 0 0 0 c 0 0 2575 2925 5152 7595 220 218 294 262 9947 10044 402 1520 2532 3336 0 0 0 0 0 0 0 0 g 0 0 2329 2871 1922 792 462 9851 9696 285 225 87 208 3982 3684 2031 0 0 0 0 0 0 0 0 t 0 0 3279 2856 1771 712 238 276 334 8437 188 243 9797 3756 2234 2188 0 0 0 0 0 0 0 0
oligos_6nt_mkv4_m1_rc_shift3 (oligos_6nt_mkv4_m1_rc)				; positions_6nt_m2 versus oligos_6nt_mkv4_m1_rc; m=8/9; ncol2=13; w=0; offset=2; strand=R; shift=3; score=0.549665; ---sccAGGTCCTGgm-------- ; cor=; Ncor= a 0 0 0 2349 2247 2399 9723 323 316 1640 195 227 201 622 2362 3549 0 0 0 0 0 0 0 0 c 0 0 0 3408 4648 6637 521 267 346 456 11541 11671 502 503 2849 3808 0 0 0 0 0 0 0 0 g 0 0 0 3550 2882 1663 1591 11415 11327 485 352 158 239 10374 4729 2615 0 0 0 0 0 0 0 0 t 0 0 0 2981 2511 1589 453 283 299 9707 200 232 11346 789 2348 2316 0 0 0 0 0 0 0 0
positions_7nt_m3_rc_shift4 (positions_7nt_m3_rc)				; positions_6nt_m2 versus positions_7nt_m3_rc; m=9/9; ncol2=12; w=0; offset=3; strand=R; shift=4; score=0.46389; ----ccAGGcCCTGss-------- ; cor=; Ncor= a 0 0 0 0 2552 2828 10980 347 439 2007 348 210 518 187 2302 3106 0 0 0 0 0 0 0 0 c 0 0 0 0 4706 5486 687 156 403 8072 11679 12218 482 261 3609 4078 0 0 0 0 0 0 0 0 g 0 0 0 0 3224 3041 763 12211 11752 640 327 243 422 12257 4775 3562 0 0 0 0 0 0 0 0 t 0 0 0 0 2457 1584 509 225 345 2220 585 268 11517 234 2253 2193 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)				; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=12; shift=3; ncol=15; ---ssCGCCCtCgss ; Alignment reference a 0 0 0 1005 1041 129 163 204 204 151 385 125 615 959 994 c 0 0 0 3233 2757 7219 176 6762 6169 6690 752 7049 1837 3072 3059 g 0 0 0 2242 2805 219 7151 432 1072 696 1656 387 4424 2527 2458 t 0 0 0 1216 1093 129 206 298 251 159 4903 135 820 1138 1185
oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)				; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m3; m=1/6; ncol2=12; w=0; offset=0; strand=D; shift=3; score= 1; ---ssCGCCCtCgss ; cor=; Ncor= a 0 0 0 1005 1041 129 163 204 204 151 385 125 615 959 994 c 0 0 0 3233 2757 7219 176 6762 6169 6690 752 7049 1837 3072 3059 g 0 0 0 2242 2805 219 7151 432 1072 696 1656 387 4424 2527 2458 t 0 0 0 1216 1093 129 206 298 251 159 4903 135 820 1138 1185
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)				; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m4; m=2/6; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.795361; ---ssCGCCCCCss- ; cor=; Ncor= a 0 0 0 2488 1962 135 315 458 510 823 699 636 2724 2234 0 c 0 0 0 6252 7272 15669 68 14212 13627 12363 13295 13733 5241 6435 0 g 0 0 0 4812 4889 248 15640 891 1251 1776 1360 1196 5295 5104 0 t 0 0 0 2645 2074 145 174 636 809 1235 843 632 2937 2424 0
oligos_7nt_mkv5_m5_rc_shift3 (oligos_7nt_mkv5_m5_rc)				; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m5_rc; m=3/6; ncol2=12; w=0; offset=0; strand=R; shift=3; score=0.769418; ---ssCGCCtGCGss ; cor=; Ncor= a 0 0 0 858 841 223 197 198 219 236 139 128 170 828 882 c 0 0 0 2264 2044 5407 170 5236 5008 1096 502 5574 423 2558 2177 g 0 0 0 2087 2544 380 5646 551 889 974 5411 361 5428 1854 2215 t 0 0 0 1010 790 209 206 234 103 3913 167 156 198 979 945
oligos_6nt_mkv4_m2_shift3 (oligos_6nt_mkv4_m2)				; oligos_7nt_mkv5_m3 versus oligos_6nt_mkv4_m2; m=4/6; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.67743; ---ssCGCCCGss-- ; cor=; Ncor= a 0 0 0 1812 2337 74 339 542 776 117 240 1404 1979 0 0 c 0 0 0 5608 4045 12632 166 10491 9525 11452 477 5645 4448 0 0 g 0 0 0 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 0 0 t 0 0 0 1770 1478 182 125 783 861 419 103 1984 1854 0 0
oligos_6nt_mkv4_m4_rc_shift3 (oligos_6nt_mkv4_m4_rc)				; oligos_7nt_mkv5_m3 versus oligos_6nt_mkv4_m4_rc; m=5/6; ncol2=10; w=0; offset=0; strand=R; shift=3; score=0.608248; ---ssCGCtCGss-- ; cor=; Ncor= a 0 0 0 1221 1418 124 199 196 776 135 174 878 1255 0 0 c 0 0 0 3726 2651 8234 113 7753 1423 8329 492 3692 2948 0 0 g 0 0 0 2598 3717 344 8366 542 2076 266 7935 3012 3311 0 0 t 0 0 0 1283 1042 126 150 337 4553 98 227 1246 1314 0 0
positions_6nt_m3_shift0 (positions_6nt_m3)				; oligos_7nt_mkv5_m3 versus positions_6nt_m3; m=6/6; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.535069; ssCCCCGCCCcss-- ; cor=; Ncor= a 2602 2354 665 483 564 827 1018 341 374 425 2045 2092 2485 0 0 c 6204 5886 13286 14281 14114 14275 144 15153 14391 14301 8309 6707 6287 0 0 g 5346 5474 1902 1430 1568 912 14639 848 1588 1423 4016 5546 5521 0 0 t 2601 3039 900 559 507 739 952 411 400 604 2383 2408 2460 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)				; oligos_7nt_mkv5_m4; m=0 (reference); ncol1=11; shift=3; ncol=14; ---ssCGCCCCCss ; Alignment reference a 0 0 0 2488 1962 135 315 458 510 823 699 636 2724 2234 c 0 0 0 6252 7272 15669 68 14212 13627 12363 13295 13733 5241 6435 g 0 0 0 4812 4889 248 15640 891 1251 1776 1360 1196 5295 5104 t 0 0 0 2645 2074 145 174 636 809 1235 843 632 2937 2424
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)				; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m4; m=1/5; ncol2=11; w=0; offset=0; strand=D; shift=3; score= 1; ---ssCGCCCCCss ; cor=; Ncor= a 0 0 0 2488 1962 135 315 458 510 823 699 636 2724 2234 c 0 0 0 6252 7272 15669 68 14212 13627 12363 13295 13733 5241 6435 g 0 0 0 4812 4889 248 15640 891 1251 1776 1360 1196 5295 5104 t 0 0 0 2645 2074 145 174 636 809 1235 843 632 2937 2424
oligos_7nt_mkv5_m3_shift3 (oligos_7nt_mkv5_m3)				; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m3; m=2/5; ncol2=12; w=0; offset=0; strand=D; shift=3; score=0.795361; ---ssCGCCCtCgs ; cor=; Ncor= a 0 0 0 1005 1041 129 163 204 204 151 385 125 615 959 c 0 0 0 3233 2757 7219 176 6762 6169 6690 752 7049 1837 3072 g 0 0 0 2242 2805 219 7151 432 1072 696 1656 387 4424 2527 t 0 0 0 1216 1093 129 206 298 251 159 4903 135 820 1138
oligos_6nt_mkv4_m2_shift3 (oligos_6nt_mkv4_m2)				; oligos_7nt_mkv5_m4 versus oligos_6nt_mkv4_m2; m=3/5; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.694721; ---ssCGCCCGss- ; cor=; Ncor= a 0 0 0 1812 2337 74 339 542 776 117 240 1404 1979 0 c 0 0 0 5608 4045 12632 166 10491 9525 11452 477 5645 4448 0 g 0 0 0 4048 5378 350 12608 1422 2076 1250 12418 4205 4957 0 t 0 0 0 1770 1478 182 125 783 861 419 103 1984 1854 0
oligos_7nt_mkv5_m5_rc_shift3 (oligos_7nt_mkv5_m5_rc)				; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m5_rc; m=4/5; ncol2=12; w=0; offset=0; strand=R; shift=3; score=0.646018; ---ssCGCCtGCGs ; cor=; Ncor= a 0 0 0 858 841 223 197 198 219 236 139 128 170 828 c 0 0 0 2264 2044 5407 170 5236 5008 1096 502 5574 423 2558 g 0 0 0 2087 2544 380 5646 551 889 974 5411 361 5428 1854 t 0 0 0 1010 790 209 206 234 103 3913 167 156 198 979
positions_6nt_m3_shift0 (positions_6nt_m3)				; oligos_7nt_mkv5_m4 versus positions_6nt_m3; m=5/5; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.619899; ssCCCCGCCCcss- ; cor=; Ncor= a 2602 2354 665 483 564 827 1018 341 374 425 2045 2092 2485 0 c 6204 5886 13286 14281 14114 14275 144 15153 14391 14301 8309 6707 6287 0 g 5346 5474 1902 1430 1568 912 14639 848 1588 1423 4016 5546 5521 0 t 2601 3039 900 559 507 739 952 411 400 604 2383 2408 2460 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m5_shift8 (positions_7nt_m5)				; positions_7nt_m5; m=0 (reference); ncol1=14; shift=8; ncol=22; --------kcmAGGACCTGgva ; Alignment reference a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385
positions_7nt_m5_shift8 (positions_7nt_m5)				; positions_7nt_m5 versus positions_7nt_m5; m=1/9; ncol2=14; w=0; offset=0; strand=D; shift=8; score= 1; --------kcmAGGACCTGgva ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385
oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)				; positions_7nt_m5 versus oligos_6nt_mkv4_m1; m=2/9; ncol2=13; w=0; offset=0; strand=D; shift=8; score=0.887257; --------kcCAGGACCTggs- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 0 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 0 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 0 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349 0
oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)				; positions_7nt_m5 versus oligos_7nt_mkv5_m1; m=3/9; ncol2=16; w=-2; offset=-2; strand=D; shift=6; score=0.832417; ------cttcCAGGACCTGgsa ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848
positions_7nt_m3_rc_shift9 (positions_7nt_m3_rc)				; positions_7nt_m5 versus positions_7nt_m3_rc; m=4/9; ncol2=12; w=0; offset=1; strand=R; shift=9; score=0.770032; ---------ccAGGcCCTGss- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2552 2828 10980 347 439 2007 348 210 518 187 2302 3106 0 c 0 0 0 0 0 0 0 0 0 4706 5486 687 156 403 8072 11679 12218 482 261 3609 4078 0 g 0 0 0 0 0 0 0 0 0 3224 3041 763 12211 11752 640 327 243 422 12257 4775 3562 0 t 0 0 0 0 0 0 0 0 0 2457 1584 509 225 345 2220 585 268 11517 234 2253 2193 0
positions_7nt_m1_shift3 (positions_7nt_m1)				; positions_7nt_m5 versus positions_7nt_m1; m=5/9; ncol2=19; w=-5; offset=-5; strand=D; shift=3; score= 0.6909; ---smcCtgCCAGGACCTggsv ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 1846 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 1888 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 1867 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276 1522
positions_6nt_m1_shift6 (positions_6nt_m1)				; positions_7nt_m5 versus positions_6nt_m1; m=6/9; ncol2=20; w=-2; offset=-2; strand=D; shift=6; score=0.646006; ------cytcCAGGACCTgsca ; cor=; Ncor= a 0 0 0 0 0 0 1016 1259 733 602 424 5495 160 122 4684 183 149 272 446 788 1083 2894 c 0 0 0 0 0 0 2724 1586 1066 4150 5204 246 160 260 352 5666 5837 532 714 2761 3353 1121 g 0 0 0 0 0 0 1440 1395 1495 779 295 360 5839 5759 306 227 151 279 4161 1845 1129 1097 t 0 0 0 0 0 0 1111 2051 2997 760 368 190 132 150 949 215 154 5208 970 897 726 1179
positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)				; positions_7nt_m5 versus positions_6nt_m2_rc; m=7/9; ncol2=23; w=-8; offset=-8; strand=R; shift=0; score=0.564019; csggccCtgCCAGGACCTgsss ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 1145 1349 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 1754 1710 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 1596 1699 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005 1491 1228
positions_7nt_m2_rc_shift9 (positions_7nt_m2_rc)				; positions_7nt_m5 versus positions_7nt_m2_rc; m=8/9; ncol2=17; w=0; offset=1; strand=R; shift=9; score=0.54683; ---------smrGGTCCTGGca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1240 1631 1867 334 224 408 118 140 248 217 418 1397 4164 c 0 0 0 0 0 0 0 0 0 2339 2011 484 319 300 402 5824 5800 425 242 417 3903 661 g 0 0 0 0 0 0 0 0 0 1691 1585 3653 5432 5662 406 315 262 409 5586 5236 681 800 t 0 0 0 0 0 0 0 0 0 1126 1169 392 311 210 5180 139 194 5314 351 325 415 771
positions_6nt_m5_shift0 (positions_6nt_m5)				; positions_7nt_m5 versus positions_6nt_m5; m=9/9; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.522745; crGGtCCTGsCAGGACCTgsca ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 472 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 324 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 300 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173 243

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m4_shift2 (oligos_6nt_mkv4_m4)				; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=10; shift=2; ncol=12; --ssCGaGCGss ; Alignment reference a 0 0 1314 1246 227 98 4553 337 150 126 1042 1283 c 0 0 3311 3012 7935 266 2076 542 8366 344 3717 2598 g 0 0 2948 3692 492 8329 1423 7753 113 8234 2651 3726 t 0 0 1255 878 174 135 776 196 199 124 1418 1221
oligos_6nt_mkv4_m4_shift2 (oligos_6nt_mkv4_m4)				; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m4; m=1/5; ncol2=10; w=0; offset=0; strand=D; shift=2; score= 1; --ssCGaGCGss ; cor=; Ncor= a 0 0 1314 1246 227 98 4553 337 150 126 1042 1283 c 0 0 3311 3012 7935 266 2076 542 8366 344 3717 2598 g 0 0 2948 3692 492 8329 1423 7753 113 8234 2651 3726 t 0 0 1255 878 174 135 776 196 199 124 1418 1221
oligos_6nt_mkv4_m2_rc_shift2 (oligos_6nt_mkv4_m2_rc)				; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m2_rc; m=2/5; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.918431; --ssCGGGCGss ; cor=; Ncor= a 0 0 1854 1984 103 419 861 783 125 182 1478 1770 c 0 0 4957 4205 12418 1250 2076 1422 12608 350 5378 4048 g 0 0 4448 5645 477 11452 9525 10491 166 12632 4045 5608 t 0 0 1979 1404 240 117 776 542 339 74 2337 1812
oligos_6nt_mkv4_m5_shift2 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m5; m=3/5; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.719479; --ssCGGCCGss ; cor=; Ncor= a 0 0 1945 2220 82 178 542 783 125 227 1515 1606 c 0 0 6097 3697 13241 1894 1423 11188 11739 386 6504 4288 g 0 0 4288 6504 386 11739 11188 1423 1894 13241 3697 6097 t 0 0 1606 1515 227 125 783 542 178 82 2220 1945
oligos_7nt_mkv5_m3_rc_shift0 (oligos_7nt_mkv5_m3_rc)				; oligos_6nt_mkv4_m4 versus oligos_7nt_mkv5_m3_rc; m=4/5; ncol2=12; w=-2; offset=-2; strand=R; shift=0; score=0.608248; sscGaGGGCGss ; cor=; Ncor= a 1185 1138 820 135 4903 159 251 298 206 129 1093 1216 c 2458 2527 4424 387 1656 696 1072 432 7151 219 2805 2242 g 3059 3072 1837 7049 752 6690 6169 6762 176 7219 2757 3233 t 994 959 615 125 385 151 204 204 163 129 1041 1005
positions_6nt_m3_rc_shift2 (positions_6nt_m3_rc)				; oligos_6nt_mkv4_m4 versus positions_6nt_m3_rc; m=5/5; ncol2=13; w=0; offset=0; strand=R; shift=2; score=0.538475; --ssgGGGCGGG ; cor=; Ncor= a 0 0 2460 2408 2383 604 400 411 952 739 507 559 c 0 0 5521 5546 4016 1423 1588 848 14639 912 1568 1430 g 0 0 6287 6707 8309 14301 14391 15153 144 14275 14114 14281 t 0 0 2485 2092 2045 425 374 341 1018 827 564 483

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m5_shift0 (positions_6nt_m5)				; positions_6nt_m5; m=0 (reference); ncol1=24; shift=0; ncol=24; crGGtCCTGsCAGGACCTgscass ; Alignment reference a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 472 257 278 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 324 375 379 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 300 427 411 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173 243 280 271
positions_6nt_m5_shift0 (positions_6nt_m5)				; positions_6nt_m5 versus positions_6nt_m5; m=1/9; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; crGGtCCTGsCAGGACCTgscass ; cor=; Ncor= a 322 410 115 67 151 85 44 76 66 145 158 1150 29 66 946 109 127 123 162 218 263 472 257 278 c 446 258 95 141 147 1044 1202 88 79 342 1055 72 28 109 106 1042 1048 177 186 480 578 324 375 379 g 301 417 978 992 145 139 46 85 1032 701 73 77 1252 1110 122 134 91 111 808 425 325 300 427 411 t 270 254 151 139 896 71 47 1090 162 151 53 40 30 54 165 54 73 928 183 216 173 243 280 271
positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)				; positions_6nt_m5 versus positions_6nt_m2_rc; m=2/9; ncol2=23; w=0; offset=0; strand=R; shift=0; score=0.835937; csggccCtgCCAGGACCTgssss- ; cor=; Ncor= a 1276 1199 876 823 1129 867 466 915 561 528 379 5053 141 128 4586 167 154 258 459 884 1145 1349 1112 0 c 1888 1789 1200 1383 2991 2978 4234 1000 801 4126 5006 340 157 236 438 5361 5483 736 763 2175 1754 1710 1838 0 g 1487 1649 2636 2713 1014 1106 769 890 3220 771 309 411 5571 5512 365 282 174 385 3835 1922 1596 1699 1869 0 t 1335 1349 1274 1067 852 1035 517 3181 1404 561 292 182 117 110 597 176 175 4607 929 1005 1491 1228 1167 0
positions_7nt_m1_shift3 (positions_7nt_m1)				; positions_6nt_m5 versus positions_7nt_m1; m=3/9; ncol2=19; w=0; offset=3; strand=D; shift=3; score=0.689035; ---smcCtgCCAGGACCTggsv-- ; cor=; Ncor= a 0 0 0 1288 1919 1057 526 1132 579 568 639 6235 209 149 5442 222 196 243 603 1113 1631 1846 0 0 c 0 0 0 2203 2189 3241 5326 893 860 5196 5720 260 136 262 398 6440 6484 749 835 1562 2152 1888 0 0 g 0 0 0 1858 1610 1477 706 816 3979 712 339 423 6643 6581 402 266 193 312 4462 3196 2064 1867 0 0 t 0 0 0 1774 1405 1348 565 4282 1705 647 425 205 135 131 881 195 250 5819 1223 1252 1276 1522 0 0
positions_6nt_m1_rc_shift3 (positions_6nt_m1_rc)				; positions_6nt_m5 versus positions_6nt_m1_rc; m=4/9; ncol2=20; w=0; offset=3; strand=R; shift=3; score=0.665214; ---sscctgscAGGTCCTGgarg- ; cor=; Ncor= a 0 0 0 1242 1419 1030 779 1179 726 897 970 5208 154 215 949 150 132 190 368 760 2997 2051 1111 0 c 0 0 0 1727 1828 3016 3645 1097 1129 1845 4161 279 151 227 306 5759 5839 360 295 779 1495 1395 1440 0 g 0 0 0 1921 1689 1220 1072 1121 3353 2761 714 532 5837 5666 352 260 160 246 5204 4150 1066 1586 2724 0 t 0 0 0 1401 1355 1025 795 2894 1083 788 446 272 149 183 4684 122 160 5495 424 602 733 1259 1016 0
positions_7nt_m2_shift3 (positions_7nt_m2)				; positions_6nt_m5 versus positions_7nt_m2; m=5/9; ncol2=17; w=0; offset=3; strand=D; shift=3; score=0.591525; ---sccCtgCCAGGACCyks---- ; cor=; Ncor= a 0 0 0 1110 1566 689 288 771 415 325 351 5314 194 139 5180 210 311 392 1169 1126 0 0 0 0 c 0 0 0 2121 2142 3524 5368 800 681 5236 5586 409 262 315 406 5662 5432 3653 1585 1691 0 0 0 0 g 0 0 0 1684 1420 1224 424 661 3903 417 242 425 5800 5824 402 300 319 484 2011 2339 0 0 0 0 t 0 0 0 1481 1268 959 316 4164 1397 418 217 248 140 118 408 224 334 1867 1631 1240 0 0 0 0
oligos_7nt_mkv5_m1_shift6 (oligos_7nt_mkv5_m1)				; positions_6nt_m5 versus oligos_7nt_mkv5_m1; m=6/9; ncol2=16; w=0; offset=6; strand=D; shift=6; score=0.555913; ------cttcCAGGACCTGgsa-- ; cor=; Ncor= a 0 0 0 0 0 0 1234 1564 865 738 785 7130 147 170 6232 205 181 208 579 1103 1860 2253 0 0 c 0 0 0 0 0 0 3521 1973 1057 5395 6018 231 126 314 325 7272 7377 575 659 1459 2401 1921 0 0 g 0 0 0 0 0 0 1843 1591 1617 955 489 398 7495 7334 363 260 204 240 5632 4222 2307 1950 0 0 t 0 0 0 0 0 0 1374 2844 4433 884 680 213 204 154 1052 235 210 6949 1102 1188 1404 1848 0 0
positions_7nt_m5_shift8 (positions_7nt_m5)				; positions_6nt_m5 versus positions_7nt_m5; m=7/9; ncol2=14; w=0; offset=8; strand=D; shift=8; score=0.522745; --------kcmAGGACCTGgva-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2188 2234 3756 9797 243 188 8437 334 276 238 712 1771 2856 3279 0 0 c 0 0 0 0 0 0 0 0 2031 3684 3982 208 87 225 285 9696 9851 462 792 1922 2871 2329 0 0 g 0 0 0 0 0 0 0 0 3336 2532 1520 402 10044 9947 262 294 218 220 7595 5152 2925 2575 0 0 t 0 0 0 0 0 0 0 0 3013 2118 1310 161 194 208 1584 244 223 9648 1469 1723 1916 2385 0 0
oligos_6nt_mkv4_m1_shift8 (oligos_6nt_mkv4_m1)				; positions_6nt_m5 versus oligos_6nt_mkv4_m1; m=8/9; ncol2=13; w=0; offset=8; strand=D; shift=8; score=0.506684; --------kcCAGGACCTggs--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2316 2348 789 11346 232 200 9707 299 283 453 1589 2511 2981 0 0 0 c 0 0 0 0 0 0 0 0 2615 4729 10374 239 158 352 485 11327 11415 1591 1663 2882 3550 0 0 0 g 0 0 0 0 0 0 0 0 3808 2849 503 502 11671 11541 456 346 267 521 6637 4648 3408 0 0 0 t 0 0 0 0 0 0 0 0 3549 2362 622 201 227 195 1640 316 323 9723 2399 2247 2349 0 0 0
positions_7nt_m3_shift8 (positions_7nt_m3)				; positions_6nt_m5 versus positions_7nt_m3; m=9/9; ncol2=12; w=0; offset=8; strand=D; shift=8; score=0.432158; --------ssCAGGgCCTgg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2193 2253 234 11517 268 585 2220 345 225 509 1584 2457 0 0 0 0 c 0 0 0 0 0 0 0 0 3562 4775 12257 422 243 327 640 11752 12211 763 3041 3224 0 0 0 0 g 0 0 0 0 0 0 0 0 4078 3609 261 482 12218 11679 8072 403 156 687 5486 4706 0 0 0 0 t 0 0 0 0 0 0 0 0 3106 2302 187 518 210 348 2007 439 347 10980 2828 2552 0 0 0 0