position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title dp_avec_ctrl -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 968 Sum of sequence lengths 344786 Min sequence length 0 Max sequence length 1000 Average sequence length 356 Possible positions 344786 Oligonucleotide statistics: Total occurrences 109071 Position interval parameters: Position interval 20 Number of windows 50 Total positions 344786 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 50 939 2 -24 [-479,-460] -469.5 55 1042 3 -23 [-459,-440] -449.5 59 1144 4 -22 [-439,-420] -429.5 63 1226 5 -21 [-419,-400] -409.5 73 1368 6 -20 [-399,-380] -389.5 80 1557 7 -19 [-379,-360] -369.5 97 1775 8 -18 [-359,-340] -349.5 105 1977 9 -17 [-339,-320] -329.5 124 2349 10 -16 [-319,-300] -309.5 138 2629 11 -15 [-299,-280] -289.5 153 2920 12 -14 [-279,-260] -269.5 172 3221 13 -13 [-259,-240] -249.5 205 3754 14 -12 [-239,-220] -229.5 247 4579 15 -11 [-219,-200] -209.5 285 5361 16 -10 [-199,-180] -189.5 331 6156 17 -9 [-179,-160] -169.5 391 7336 18 -8 [-159,-140] -149.5 472 8715 19 -7 [-139,-120] -129.5 566 10463 20 -6 [-119,-100] -109.5 688 12624 21 -5 [-99,-80] -89.5 825 15094 22 -4 [-79,-60] -69.5 968 18540 23 -3 [-59,-40] -49.5 968 19360 24 -2 [-39,-20] -29.5 968 19360 25 -1 [-19,0] -9.5 968 19360 26 0 [1,20] 10.5 968 19360 27 1 [21,40] 30.5 968 19360 28 2 [41,60] 50.5 968 19360 29 3 [61,80] 70.5 968 18401 30 4 [81,100] 90.5 821 14946 31 5 [101,120] 110.5 683 12504 32 6 [121,140] 130.5 562 10374 33 7 [141,160] 150.5 470 8634 34 8 [161,180] 170.5 388 7280 35 9 [181,200] 190.5 329 6115 36 10 [201,220] 210.5 283 5324 37 11 [221,240] 230.5 247 4544 38 12 [241,260] 250.5 200 3723 39 13 [261,280] 270.5 172 3205 40 14 [281,300] 290.5 152 2904 41 15 [301,320] 310.5 137 2615 42 16 [321,340] 330.5 124 2328 43 17 [341,360] 350.5 104 1975 44 18 [361,380] 370.5 97 1753 45 19 [381,400] 390.5 80 1547 46 20 [401,420] 410.5 73 1357 47 21 [421,440] 430.5 63 1221 48 22 [441,460] 450.5 59 1138 49 23 [461,480] 470.5 55 1037 50 24 [481,500] 490.5 50 932 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 27572 | 2520.5 | 49 | 0.0e+00 | 0 | 300 | 1 | 33 | 38 | 37 | 37 | 37 | 28 | 47 | 51 | 76 | 110 | 99 | 132 | 219 | 312 | 362 | 368 | 476 | 642 | 826 | 1104 | 1432 | 1855 | 1934 | 2018 | 1920 | 1928 | 1872 | 1852 | 1802 | 1332 | 1022 | 783 | 626 | 498 | 379 | 277 | 281 | 177 | 104 | 75 | 82 | 75 | 49 | 41 | 26 | 27 | 28 | 15 | 10 | 18 |
| c | c | 27416 | 2381.1 | 49 | 0.0e+00 | 0 | 300 | 2 | 37 | 50 | 42 | 26 | 26 | 38 | 55 | 49 | 54 | 92 | 136 | 150 | 225 | 294 | 311 | 391 | 458 | 626 | 793 | 1091 | 1404 | 1820 | 1940 | 1870 | 1903 | 1908 | 1906 | 1894 | 1799 | 1346 | 1044 | 789 | 645 | 498 | 343 | 308 | 245 | 184 | 130 | 114 | 96 | 67 | 42 | 43 | 38 | 23 | 21 | 21 | 7 | 24 |
| a | a | 27234 | 2224.7 | 49 | 0.0e+00 | 0 | 300 | 3 | 48 | 42 | 51 | 31 | 27 | 33 | 36 | 36 | 70 | 108 | 136 | 142 | 256 | 310 | 331 | 392 | 490 | 643 | 852 | 1088 | 1392 | 1762 | 1912 | 1887 | 1874 | 1866 | 1816 | 1768 | 1705 | 1320 | 1073 | 865 | 668 | 509 | 391 | 301 | 274 | 180 | 109 | 93 | 101 | 68 | 47 | 27 | 31 | 21 | 16 | 7 | 7 | 22 |
| t | t | 26849 | 2026.4 | 49 | 0.0e+00 | 0 | 300 | 4 | 64 | 61 | 51 | 44 | 24 | 40 | 61 | 37 | 81 | 106 | 123 | 146 | 228 | 296 | 338 | 378 | 492 | 647 | 792 | 1093 | 1412 | 1896 | 1810 | 1812 | 1828 | 1722 | 1773 | 1773 | 1676 | 1304 | 1035 | 820 | 664 | 489 | 364 | 335 | 262 | 174 | 123 | 112 | 72 | 78 | 62 | 48 | 28 | 19 | 10 | 16 | 13 | 17 |
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