position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title dp_avec_ctrl -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/01/11/peak-motifs.2026-01-11.234142_2026-01-11.234142_53Rg2T/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 5977 Sum of sequence lengths 1821896 Min sequence length 0 Max sequence length 1000 Average sequence length 304 Possible positions 1821896 Oligonucleotide statistics: Total occurrences 1561033 Position interval parameters: Position interval 20 Number of windows 50 Total positions 1821896 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 171 3222 2 -24 [-479,-460] -469.5 179 3517 3 -23 [-459,-440] -449.5 210 3864 4 -22 [-439,-420] -429.5 244 4530 5 -21 [-419,-400] -409.5 279 5309 6 -20 [-399,-380] -389.5 323 6044 7 -19 [-379,-360] -369.5 378 7104 8 -18 [-359,-340] -349.5 430 8105 9 -17 [-339,-320] -329.5 491 9228 10 -16 [-319,-300] -309.5 561 10633 11 -15 [-299,-280] -289.5 634 11949 12 -14 [-279,-260] -269.5 743 13813 13 -13 [-259,-240] -249.5 866 16119 14 -12 [-239,-220] -229.5 1037 19054 15 -11 [-219,-200] -209.5 1210 22606 16 -10 [-199,-180] -189.5 1452 26671 17 -9 [-179,-160] -169.5 1853 32957 18 -8 [-159,-140] -149.5 2253 41326 19 -7 [-139,-120] -129.5 2706 49676 20 -6 [-119,-100] -109.5 3371 60632 21 -5 [-99,-80] -89.5 4976 82744 22 -4 [-79,-60] -69.5 5977 116141 23 -3 [-59,-40] -49.5 5977 119540 24 -2 [-39,-20] -29.5 5977 119540 25 -1 [-19,0] -9.5 5977 119540 26 0 [1,20] 10.5 5977 119540 27 1 [21,40] 30.5 5977 119540 28 2 [41,60] 50.5 5977 119540 29 3 [61,80] 70.5 5977 115109 30 4 [81,100] 90.5 4875 81129 31 5 [101,120] 110.5 3325 59996 32 6 [121,140] 130.5 2682 49226 33 7 [141,160] 150.5 2237 40922 34 8 [161,180] 170.5 1826 32558 35 9 [181,200] 190.5 1440 26434 36 10 [201,220] 210.5 1194 22430 37 11 [221,240] 230.5 1026 18900 38 12 [241,260] 250.5 859 15995 39 13 [261,280] 270.5 735 13706 40 14 [281,300] 290.5 629 11863 41 15 [301,320] 310.5 558 10556 42 16 [321,340] 330.5 486 9167 43 17 [341,360] 350.5 429 8062 44 18 [361,380] 370.5 376 7045 45 19 [381,400] 390.5 321 5999 46 20 [401,420] 410.5 277 5275 47 21 [421,440] 430.5 242 4494 48 22 [441,460] 450.5 209 3830 49 23 [461,480] 470.5 179 3508 50 24 [481,500] 490.5 169 3208 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 362728 | 1218.3 | 49 | 0.0e+00 | 0 | 300 | 1 | 625 | 671 | 672 | 786 | 944 | 1053 | 1221 | 1438 | 1674 | 1865 | 2013 | 2332 | 2875 | 3344 | 4011 | 4903 | 6151 | 7826 | 9667 | 11986 | 17013 | 23594 | 24206 | 24160 | 24388 | 24376 | 24298 | 24593 | 25068 | 17352 | 12204 | 9868 | 8069 | 6586 | 5097 | 4215 | 3408 | 2828 | 2442 | 2161 | 1911 | 1683 | 1423 | 1224 | 1065 | 878 | 728 | 681 | 580 | 572 |
| g | g | 361486 | 1144.5 | 49 | 0.0e+00 | 0 | 300 | 2 | 598 | 625 | 697 | 782 | 909 | 1045 | 1345 | 1508 | 1631 | 1908 | 2167 | 2581 | 3010 | 3462 | 4276 | 5159 | 6500 | 8158 | 9674 | 12430 | 17764 | 25192 | 24481 | 24247 | 23993 | 24149 | 24097 | 24225 | 23066 | 16307 | 11917 | 9626 | 8030 | 6115 | 4859 | 4054 | 3392 | 2900 | 2356 | 2006 | 1805 | 1567 | 1338 | 1214 | 971 | 864 | 741 | 591 | 566 | 588 |
| a | a | 417129 | 901.2 | 49 | 0.0e+00 | 0 | 300 | 3 | 666 | 746 | 842 | 952 | 1151 | 1242 | 1496 | 1658 | 1939 | 2153 | 2542 | 2963 | 3528 | 4170 | 4910 | 5935 | 7355 | 9386 | 11498 | 13865 | 19218 | 27794 | 28724 | 28611 | 28619 | 28124 | 28370 | 27984 | 26186 | 18076 | 13436 | 11115 | 9117 | 7241 | 5771 | 4801 | 4088 | 3376 | 2873 | 2482 | 2136 | 1800 | 1626 | 1418 | 1147 | 1038 | 924 | 706 | 687 | 644 |
| t | t | 419690 | 844.6 | 49 | 0.0e+00 | 0 | 300 | 4 | 693 | 726 | 761 | 966 | 1048 | 1250 | 1419 | 1716 | 1889 | 2314 | 2576 | 2947 | 3523 | 4209 | 4938 | 5798 | 7254 | 9209 | 11135 | 13703 | 18657 | 26845 | 28348 | 28523 | 28516 | 28545 | 28460 | 28665 | 27937 | 19020 | 13812 | 11284 | 9448 | 7219 | 5949 | 4881 | 4044 | 3491 | 2896 | 2467 | 2227 | 1953 | 1725 | 1478 | 1201 | 1063 | 885 | 753 | 681 | 643 |
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